Experiment: PYE with CHIR-090 10 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02811 and CCNA_02812 are separated by 161 nucleotides CCNA_02812 and CCNA_02813 overlap by 4 nucleotides CCNA_02813 and CCNA_02814 overlap by 4 nucleotides CCNA_02814 and CCNA_02815 are separated by 52 nucleotides
CCNA_02811: CCNA_02811 - heavy metal translocating P-type ATPase, at 2,967,624 to 2,969,657
_02811
CCNA_02812: CCNA_02812 - glutaredoxin, at 2,969,819 to 2,970,106
_02812
CCNA_02813: CCNA_02813 - transposase, at 2,970,103 to 2,970,537
_02813
CCNA_02814: CCNA_02814 - transposase, at 2,970,534 to 2,971,514
_02814
CCNA_02815: CCNA_02815 - ice nucleation protein, at 2,971,567 to 2,973,531
_02815
Position (kb)
2970
2971
2972 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2969.537 kb on + strand at 2969.559 kb on + strand at 2969.574 kb on + strand at 2969.591 kb on + strand at 2969.612 kb on + strand at 2969.714 kb on + strand at 2969.722 kb on - strand at 2969.722 kb on - strand at 2969.722 kb on - strand at 2969.723 kb on - strand at 2969.758 kb on - strand at 2969.764 kb on + strand at 2969.772 kb on - strand at 2969.778 kb on + strand at 2969.807 kb on + strand at 2969.863 kb on + strand, within CCNA_02812 at 2969.876 kb on - strand, within CCNA_02812 at 2969.937 kb on + strand, within CCNA_02812 at 2969.952 kb on + strand, within CCNA_02812 at 2969.952 kb on + strand, within CCNA_02812 at 2969.971 kb on + strand, within CCNA_02812 at 2969.983 kb on + strand, within CCNA_02812 at 2969.992 kb on - strand, within CCNA_02812 at 2970.025 kb on + strand, within CCNA_02812 at 2970.040 kb on - strand, within CCNA_02812 at 2970.056 kb on + strand, within CCNA_02812 at 2970.056 kb on + strand, within CCNA_02812 at 2970.064 kb on - strand, within CCNA_02812 at 2970.074 kb on - strand, within CCNA_02812 at 2970.122 kb on - strand at 2971.597 kb on - strand at 2971.606 kb on - strand at 2971.606 kb on - strand at 2971.606 kb on - strand at 2971.606 kb on - strand at 2971.638 kb on + strand at 2971.646 kb on - strand at 2971.669 kb on - strand at 2971.679 kb on - strand at 2971.734 kb on + strand at 2971.762 kb on - strand at 2971.766 kb on + strand, within CCNA_02815 at 2971.766 kb on + strand, within CCNA_02815 at 2971.766 kb on + strand, within CCNA_02815 at 2971.774 kb on - strand, within CCNA_02815 at 2971.774 kb on - strand, within CCNA_02815 at 2971.814 kb on + strand, within CCNA_02815 at 2971.819 kb on + strand, within CCNA_02815 at 2971.901 kb on + strand, within CCNA_02815 at 2971.912 kb on + strand, within CCNA_02815 at 2971.912 kb on + strand, within CCNA_02815 at 2971.912 kb on + strand, within CCNA_02815 at 2971.912 kb on + strand, within CCNA_02815 at 2971.912 kb on + strand, within CCNA_02815 at 2971.929 kb on + strand, within CCNA_02815 at 2971.929 kb on + strand, within CCNA_02815 at 2971.935 kb on - strand, within CCNA_02815 at 2971.937 kb on - strand, within CCNA_02815 at 2971.951 kb on + strand, within CCNA_02815 at 2971.951 kb on + strand, within CCNA_02815 at 2971.951 kb on + strand, within CCNA_02815 at 2971.951 kb on + strand, within CCNA_02815 at 2971.951 kb on + strand, within CCNA_02815 at 2971.956 kb on + strand, within CCNA_02815 at 2971.959 kb on - strand, within CCNA_02815 at 2971.961 kb on + strand, within CCNA_02815 at 2971.961 kb on + strand, within CCNA_02815 at 2971.961 kb on + strand, within CCNA_02815 at 2971.964 kb on - strand, within CCNA_02815 at 2971.969 kb on - strand, within CCNA_02815 at 2971.969 kb on - strand, within CCNA_02815 at 2971.969 kb on - strand, within CCNA_02815 at 2971.979 kb on - strand, within CCNA_02815 at 2972.018 kb on - strand, within CCNA_02815 at 2972.033 kb on + strand, within CCNA_02815 at 2972.033 kb on + strand, within CCNA_02815 at 2972.033 kb on + strand, within CCNA_02815 at 2972.033 kb on + strand, within CCNA_02815 at 2972.033 kb on + strand, within CCNA_02815 at 2972.041 kb on - strand, within CCNA_02815 at 2972.046 kb on - strand, within CCNA_02815 at 2972.103 kb on - strand, within CCNA_02815 at 2972.107 kb on + strand, within CCNA_02815 at 2972.107 kb on + strand, within CCNA_02815 at 2972.134 kb on - strand, within CCNA_02815 at 2972.177 kb on + strand, within CCNA_02815 at 2972.193 kb on - strand, within CCNA_02815 at 2972.235 kb on + strand, within CCNA_02815 at 2972.240 kb on + strand, within CCNA_02815 at 2972.248 kb on - strand, within CCNA_02815 at 2972.253 kb on - strand, within CCNA_02815 at 2972.253 kb on - strand, within CCNA_02815 at 2972.284 kb on - strand, within CCNA_02815 at 2972.322 kb on - strand, within CCNA_02815 at 2972.332 kb on - strand, within CCNA_02815 at 2972.356 kb on - strand, within CCNA_02815 at 2972.358 kb on + strand, within CCNA_02815 at 2972.371 kb on - strand, within CCNA_02815 at 2972.407 kb on - strand, within CCNA_02815 at 2972.445 kb on - strand, within CCNA_02815 at 2972.461 kb on + strand, within CCNA_02815 at 2972.484 kb on - strand, within CCNA_02815 at 2972.502 kb on + strand, within CCNA_02815 at 2972.507 kb on + strand, within CCNA_02815 at 2972.507 kb on + strand, within CCNA_02815
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL remove 2,969,537 + +0.7 2,969,559 + +0.1 2,969,574 + -0.1 2,969,591 + +0.3 2,969,612 + -0.3 2,969,714 + -0.5 2,969,722 - +0.4 2,969,722 - +0.4 2,969,722 - -1.8 2,969,723 - -0.8 2,969,758 - -0.6 2,969,764 + -1.2 2,969,772 - +0.3 2,969,778 + +1.1 2,969,807 + +0.2 2,969,863 + CCNA_02812 0.15 +0.0 2,969,876 - CCNA_02812 0.20 +0.7 2,969,937 + CCNA_02812 0.41 +0.4 2,969,952 + CCNA_02812 0.46 +0.5 2,969,952 + CCNA_02812 0.46 +0.9 2,969,971 + CCNA_02812 0.53 -0.1 2,969,983 + CCNA_02812 0.57 +1.1 2,969,992 - CCNA_02812 0.60 -0.7 2,970,025 + CCNA_02812 0.72 +0.3 2,970,040 - CCNA_02812 0.77 -1.0 2,970,056 + CCNA_02812 0.82 +0.8 2,970,056 + CCNA_02812 0.82 +1.2 2,970,064 - CCNA_02812 0.85 -3.1 2,970,074 - CCNA_02812 0.89 -0.6 2,970,122 - -1.7 2,971,597 - -0.9 2,971,606 - +0.1 2,971,606 - +0.4 2,971,606 - +0.0 2,971,606 - -0.2 2,971,638 + +0.4 2,971,646 - +1.6 2,971,669 - -0.1 2,971,679 - +2.1 2,971,734 + +1.5 2,971,762 - -1.5 2,971,766 + CCNA_02815 0.10 -0.5 2,971,766 + CCNA_02815 0.10 -0.9 2,971,766 + CCNA_02815 0.10 -0.4 2,971,774 - CCNA_02815 0.11 -0.3 2,971,774 - CCNA_02815 0.11 -0.3 2,971,814 + CCNA_02815 0.13 +0.4 2,971,819 + CCNA_02815 0.13 -1.0 2,971,901 + CCNA_02815 0.17 -0.2 2,971,912 + CCNA_02815 0.18 -0.2 2,971,912 + CCNA_02815 0.18 -1.1 2,971,912 + CCNA_02815 0.18 +0.5 2,971,912 + CCNA_02815 0.18 -1.0 2,971,912 + CCNA_02815 0.18 -0.5 2,971,929 + CCNA_02815 0.18 +0.6 2,971,929 + CCNA_02815 0.18 -1.6 2,971,935 - CCNA_02815 0.19 -0.2 2,971,937 - CCNA_02815 0.19 +1.0 2,971,951 + CCNA_02815 0.20 +0.6 2,971,951 + CCNA_02815 0.20 -0.3 2,971,951 + CCNA_02815 0.20 -0.2 2,971,951 + CCNA_02815 0.20 -0.4 2,971,951 + CCNA_02815 0.20 +0.8 2,971,956 + CCNA_02815 0.20 +0.8 2,971,959 - CCNA_02815 0.20 -0.8 2,971,961 + CCNA_02815 0.20 -1.1 2,971,961 + CCNA_02815 0.20 +0.7 2,971,961 + CCNA_02815 0.20 +1.0 2,971,964 - CCNA_02815 0.20 +0.2 2,971,969 - CCNA_02815 0.20 -0.6 2,971,969 - CCNA_02815 0.20 +0.3 2,971,969 - CCNA_02815 0.20 -0.7 2,971,979 - CCNA_02815 0.21 -0.2 2,972,018 - CCNA_02815 0.23 -0.6 2,972,033 + CCNA_02815 0.24 +0.5 2,972,033 + CCNA_02815 0.24 -0.6 2,972,033 + CCNA_02815 0.24 -0.9 2,972,033 + CCNA_02815 0.24 -1.3 2,972,033 + CCNA_02815 0.24 -0.3 2,972,041 - CCNA_02815 0.24 +0.2 2,972,046 - CCNA_02815 0.24 +0.5 2,972,103 - CCNA_02815 0.27 +0.6 2,972,107 + CCNA_02815 0.27 -0.9 2,972,107 + CCNA_02815 0.27 -0.1 2,972,134 - CCNA_02815 0.29 +0.1 2,972,177 + CCNA_02815 0.31 +0.5 2,972,193 - CCNA_02815 0.32 +1.0 2,972,235 + CCNA_02815 0.34 +0.0 2,972,240 + CCNA_02815 0.34 +0.1 2,972,248 - CCNA_02815 0.35 -0.8 2,972,253 - CCNA_02815 0.35 +0.1 2,972,253 - CCNA_02815 0.35 +0.3 2,972,284 - CCNA_02815 0.36 -0.3 2,972,322 - CCNA_02815 0.38 +0.4 2,972,332 - CCNA_02815 0.39 -1.1 2,972,356 - CCNA_02815 0.40 +0.1 2,972,358 + CCNA_02815 0.40 +1.0 2,972,371 - CCNA_02815 0.41 -1.0 2,972,407 - CCNA_02815 0.43 -0.3 2,972,445 - CCNA_02815 0.45 -0.1 2,972,461 + CCNA_02815 0.45 +1.7 2,972,484 - CCNA_02815 0.47 +0.8 2,972,502 + CCNA_02815 0.48 -0.3 2,972,507 + CCNA_02815 0.48 +0.8 2,972,507 + CCNA_02815 0.48 +0.1
Or see this region's nucleotide sequence