Experiment: PYE with CHIR-090 10 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02626 and CCNA_02627 are separated by 222 nucleotides CCNA_02627 and CCNA_02628 are separated by 218 nucleotides
CCNA_02626: CCNA_02626 - D-alanine--D-alanine ligase, at 2,775,710 to 2,776,684
_02626
CCNA_02627: CCNA_02627 - aminopeptidase, at 2,776,907 to 2,778,310
_02627
CCNA_02628: CCNA_02628 - UDP-N-acetylenolpyruvoylglucosamine reductase, at 2,778,529 to 2,779,434
_02628
Position (kb)
2776
2777
2778
2779 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2776.665 kb on + strand at 2776.707 kb on + strand at 2776.707 kb on + strand at 2776.707 kb on + strand at 2776.732 kb on - strand at 2776.761 kb on + strand at 2776.808 kb on + strand at 2776.809 kb on - strand at 2776.823 kb on - strand at 2776.828 kb on - strand at 2776.843 kb on - strand at 2776.847 kb on + strand at 2776.860 kb on + strand at 2776.861 kb on + strand at 2776.876 kb on - strand at 2776.886 kb on + strand at 2776.892 kb on + strand at 2776.894 kb on - strand at 2776.894 kb on - strand at 2776.968 kb on + strand at 2776.997 kb on + strand at 2777.005 kb on - strand at 2777.008 kb on + strand at 2777.022 kb on + strand at 2777.024 kb on - strand at 2777.030 kb on - strand at 2777.030 kb on - strand at 2777.030 kb on - strand at 2777.160 kb on + strand, within CCNA_02627 at 2777.160 kb on + strand, within CCNA_02627 at 2777.160 kb on + strand, within CCNA_02627 at 2777.204 kb on - strand, within CCNA_02627 at 2777.220 kb on - strand, within CCNA_02627 at 2777.239 kb on + strand, within CCNA_02627 at 2777.241 kb on - strand, within CCNA_02627 at 2777.284 kb on - strand, within CCNA_02627 at 2777.286 kb on + strand, within CCNA_02627 at 2777.286 kb on + strand, within CCNA_02627 at 2777.321 kb on - strand, within CCNA_02627 at 2777.397 kb on + strand, within CCNA_02627 at 2777.447 kb on + strand, within CCNA_02627 at 2777.450 kb on - strand, within CCNA_02627 at 2777.455 kb on - strand, within CCNA_02627 at 2777.467 kb on + strand, within CCNA_02627 at 2777.469 kb on + strand, within CCNA_02627 at 2777.475 kb on - strand, within CCNA_02627 at 2777.475 kb on - strand, within CCNA_02627 at 2777.475 kb on - strand, within CCNA_02627 at 2777.523 kb on + strand, within CCNA_02627 at 2777.531 kb on - strand, within CCNA_02627 at 2777.531 kb on - strand, within CCNA_02627 at 2777.535 kb on + strand, within CCNA_02627 at 2777.543 kb on + strand, within CCNA_02627 at 2777.551 kb on - strand, within CCNA_02627 at 2777.558 kb on + strand, within CCNA_02627 at 2777.581 kb on + strand, within CCNA_02627 at 2777.597 kb on + strand, within CCNA_02627 at 2777.630 kb on - strand, within CCNA_02627 at 2777.680 kb on - strand, within CCNA_02627 at 2777.734 kb on - strand, within CCNA_02627 at 2777.749 kb on - strand, within CCNA_02627 at 2777.779 kb on - strand, within CCNA_02627 at 2777.784 kb on - strand, within CCNA_02627 at 2777.790 kb on - strand, within CCNA_02627 at 2777.818 kb on - strand, within CCNA_02627 at 2777.820 kb on + strand, within CCNA_02627 at 2777.870 kb on - strand, within CCNA_02627 at 2777.878 kb on - strand, within CCNA_02627 at 2777.910 kb on + strand, within CCNA_02627 at 2777.910 kb on + strand, within CCNA_02627 at 2777.918 kb on - strand, within CCNA_02627 at 2777.918 kb on - strand, within CCNA_02627 at 2777.918 kb on - strand, within CCNA_02627 at 2777.918 kb on - strand, within CCNA_02627 at 2777.918 kb on - strand, within CCNA_02627 at 2777.918 kb on - strand, within CCNA_02627 at 2777.918 kb on - strand, within CCNA_02627 at 2777.961 kb on + strand, within CCNA_02627 at 2777.966 kb on + strand, within CCNA_02627 at 2777.966 kb on + strand, within CCNA_02627 at 2777.966 kb on + strand, within CCNA_02627 at 2777.974 kb on - strand, within CCNA_02627 at 2777.974 kb on - strand, within CCNA_02627 at 2777.994 kb on - strand, within CCNA_02627 at 2778.060 kb on + strand, within CCNA_02627 at 2778.060 kb on + strand, within CCNA_02627 at 2778.071 kb on + strand, within CCNA_02627 at 2778.077 kb on + strand, within CCNA_02627 at 2778.084 kb on + strand, within CCNA_02627 at 2778.084 kb on + strand, within CCNA_02627 at 2778.084 kb on + strand, within CCNA_02627 at 2778.084 kb on + strand, within CCNA_02627 at 2778.084 kb on + strand, within CCNA_02627 at 2778.084 kb on + strand, within CCNA_02627 at 2778.092 kb on - strand, within CCNA_02627 at 2778.092 kb on - strand, within CCNA_02627 at 2778.107 kb on + strand, within CCNA_02627 at 2778.116 kb on - strand, within CCNA_02627 at 2778.122 kb on - strand, within CCNA_02627 at 2778.127 kb on - strand, within CCNA_02627 at 2778.148 kb on + strand, within CCNA_02627 at 2778.185 kb on + strand at 2778.187 kb on - strand at 2778.193 kb on - strand at 2778.193 kb on - strand at 2778.197 kb on + strand at 2778.202 kb on + strand at 2778.212 kb on - strand at 2778.228 kb on + strand at 2778.236 kb on - strand at 2778.236 kb on - strand at 2778.239 kb on - strand at 2778.326 kb on - strand at 2778.326 kb on - strand at 2778.341 kb on - strand at 2778.372 kb on + strand at 2778.372 kb on + strand at 2778.384 kb on + strand at 2778.401 kb on - strand at 2778.403 kb on + strand at 2778.403 kb on + strand at 2778.403 kb on + strand at 2778.403 kb on + strand at 2778.411 kb on - strand at 2778.411 kb on - strand at 2778.411 kb on - strand at 2778.440 kb on - strand at 2778.539 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL remove 2,776,665 + -2.4 2,776,707 + -0.9 2,776,707 + -1.8 2,776,707 + +0.2 2,776,732 - +0.3 2,776,761 + -0.3 2,776,808 + -0.3 2,776,809 - -0.5 2,776,823 - +0.6 2,776,828 - +0.5 2,776,843 - +1.4 2,776,847 + +2.2 2,776,860 + -0.8 2,776,861 + +0.1 2,776,876 - -0.1 2,776,886 + -0.5 2,776,892 + -1.7 2,776,894 - -1.2 2,776,894 - +0.2 2,776,968 + +0.0 2,776,997 + -0.5 2,777,005 - +0.2 2,777,008 + -1.2 2,777,022 + +1.1 2,777,024 - -0.3 2,777,030 - +1.1 2,777,030 - +0.1 2,777,030 - +0.2 2,777,160 + CCNA_02627 0.18 -1.8 2,777,160 + CCNA_02627 0.18 -1.5 2,777,160 + CCNA_02627 0.18 -0.7 2,777,204 - CCNA_02627 0.21 +0.8 2,777,220 - CCNA_02627 0.22 -0.0 2,777,239 + CCNA_02627 0.24 -0.1 2,777,241 - CCNA_02627 0.24 +0.3 2,777,284 - CCNA_02627 0.27 +0.4 2,777,286 + CCNA_02627 0.27 -1.5 2,777,286 + CCNA_02627 0.27 +0.5 2,777,321 - CCNA_02627 0.29 +0.1 2,777,397 + CCNA_02627 0.35 +1.9 2,777,447 + CCNA_02627 0.38 -0.1 2,777,450 - CCNA_02627 0.39 +0.1 2,777,455 - CCNA_02627 0.39 +0.4 2,777,467 + CCNA_02627 0.40 +0.1 2,777,469 + CCNA_02627 0.40 -1.3 2,777,475 - CCNA_02627 0.40 +0.2 2,777,475 - CCNA_02627 0.40 +0.8 2,777,475 - CCNA_02627 0.40 +0.5 2,777,523 + CCNA_02627 0.44 +0.3 2,777,531 - CCNA_02627 0.44 +0.5 2,777,531 - CCNA_02627 0.44 -0.2 2,777,535 + CCNA_02627 0.45 -2.5 2,777,543 + CCNA_02627 0.45 -1.7 2,777,551 - CCNA_02627 0.46 -0.8 2,777,558 + CCNA_02627 0.46 -1.2 2,777,581 + CCNA_02627 0.48 -0.2 2,777,597 + CCNA_02627 0.49 -1.0 2,777,630 - CCNA_02627 0.51 +1.0 2,777,680 - CCNA_02627 0.55 +0.8 2,777,734 - CCNA_02627 0.59 +1.1 2,777,749 - CCNA_02627 0.60 +1.6 2,777,779 - CCNA_02627 0.62 +0.0 2,777,784 - CCNA_02627 0.62 -0.8 2,777,790 - CCNA_02627 0.63 +0.6 2,777,818 - CCNA_02627 0.65 +0.1 2,777,820 + CCNA_02627 0.65 -0.6 2,777,870 - CCNA_02627 0.69 +1.9 2,777,878 - CCNA_02627 0.69 +0.3 2,777,910 + CCNA_02627 0.71 -0.1 2,777,910 + CCNA_02627 0.71 -0.6 2,777,918 - CCNA_02627 0.72 -0.1 2,777,918 - CCNA_02627 0.72 +0.1 2,777,918 - CCNA_02627 0.72 +0.1 2,777,918 - CCNA_02627 0.72 -0.5 2,777,918 - CCNA_02627 0.72 +0.3 2,777,918 - CCNA_02627 0.72 +1.2 2,777,918 - CCNA_02627 0.72 +0.9 2,777,961 + CCNA_02627 0.75 -1.1 2,777,966 + CCNA_02627 0.75 -0.9 2,777,966 + CCNA_02627 0.75 -0.3 2,777,966 + CCNA_02627 0.75 -0.1 2,777,974 - CCNA_02627 0.76 -0.5 2,777,974 - CCNA_02627 0.76 -0.3 2,777,994 - CCNA_02627 0.77 +0.9 2,778,060 + CCNA_02627 0.82 -0.5 2,778,060 + CCNA_02627 0.82 -1.3 2,778,071 + CCNA_02627 0.83 -1.2 2,778,077 + CCNA_02627 0.83 -0.5 2,778,084 + CCNA_02627 0.84 +0.2 2,778,084 + CCNA_02627 0.84 -1.0 2,778,084 + CCNA_02627 0.84 -1.2 2,778,084 + CCNA_02627 0.84 +0.4 2,778,084 + CCNA_02627 0.84 -0.5 2,778,084 + CCNA_02627 0.84 -1.1 2,778,092 - CCNA_02627 0.84 +1.3 2,778,092 - CCNA_02627 0.84 +0.1 2,778,107 + CCNA_02627 0.85 -0.4 2,778,116 - CCNA_02627 0.86 +0.3 2,778,122 - CCNA_02627 0.87 +1.0 2,778,127 - CCNA_02627 0.87 +0.1 2,778,148 + CCNA_02627 0.88 -0.4 2,778,185 + -1.0 2,778,187 - +0.1 2,778,193 - -1.0 2,778,193 - -0.5 2,778,197 + -2.4 2,778,202 + -0.2 2,778,212 - +0.1 2,778,228 + -0.3 2,778,236 - -0.4 2,778,236 - +0.2 2,778,239 - +0.8 2,778,326 - +1.3 2,778,326 - +0.1 2,778,341 - -0.2 2,778,372 + +0.4 2,778,372 + -0.8 2,778,384 + -0.3 2,778,401 - +1.6 2,778,403 + +0.0 2,778,403 + +0.6 2,778,403 + -0.5 2,778,403 + -0.6 2,778,411 - +1.6 2,778,411 - +0.4 2,778,411 - +0.4 2,778,440 - +0.5 2,778,539 + -0.7
Or see this region's nucleotide sequence