Experiment: PYE with CHIR-090 10 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02568 and CCNA_02569 are separated by 322 nucleotides CCNA_02569 and CCNA_02570 are separated by 107 nucleotides
CCNA_02568: CCNA_02568 - LAO/AO transport system kinase, at 2,719,265 to 2,720,245
_02568
CCNA_02569: CCNA_02569 - glutathione S-transferase, at 2,720,568 to 2,721,197
_02569
CCNA_02570: CCNA_02570 - major facilitator superfamily transporter, at 2,721,305 to 2,722,639
_02570
Position (kb)
2720
2721
2722 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2719.568 kb on - strand, within CCNA_02568 at 2719.584 kb on + strand, within CCNA_02568 at 2719.594 kb on + strand, within CCNA_02568 at 2719.599 kb on + strand, within CCNA_02568 at 2719.643 kb on + strand, within CCNA_02568 at 2719.648 kb on + strand, within CCNA_02568 at 2719.677 kb on + strand, within CCNA_02568 at 2719.695 kb on - strand, within CCNA_02568 at 2719.709 kb on - strand, within CCNA_02568 at 2719.741 kb on + strand, within CCNA_02568 at 2719.741 kb on + strand, within CCNA_02568 at 2719.766 kb on + strand, within CCNA_02568 at 2719.786 kb on + strand, within CCNA_02568 at 2719.786 kb on + strand, within CCNA_02568 at 2719.818 kb on - strand, within CCNA_02568 at 2719.834 kb on + strand, within CCNA_02568 at 2719.851 kb on - strand, within CCNA_02568 at 2719.882 kb on + strand, within CCNA_02568 at 2719.882 kb on + strand, within CCNA_02568 at 2719.919 kb on + strand, within CCNA_02568 at 2719.931 kb on - strand, within CCNA_02568 at 2719.943 kb on - strand, within CCNA_02568 at 2719.974 kb on + strand, within CCNA_02568 at 2719.979 kb on + strand, within CCNA_02568 at 2720.003 kb on - strand, within CCNA_02568 at 2720.011 kb on - strand, within CCNA_02568 at 2720.013 kb on + strand, within CCNA_02568 at 2720.078 kb on - strand, within CCNA_02568 at 2720.087 kb on + strand, within CCNA_02568 at 2720.139 kb on + strand, within CCNA_02568 at 2720.158 kb on + strand at 2720.246 kb on + strand at 2720.246 kb on + strand at 2720.256 kb on - strand at 2720.258 kb on + strand at 2720.259 kb on - strand at 2720.279 kb on - strand at 2720.326 kb on - strand at 2720.337 kb on - strand at 2720.370 kb on + strand at 2720.397 kb on - strand at 2720.436 kb on - strand at 2720.438 kb on - strand at 2720.438 kb on - strand at 2720.452 kb on - strand at 2720.461 kb on - strand at 2720.475 kb on + strand at 2720.634 kb on + strand, within CCNA_02569 at 2720.634 kb on + strand, within CCNA_02569 at 2720.637 kb on - strand, within CCNA_02569 at 2720.642 kb on - strand, within CCNA_02569 at 2720.642 kb on - strand, within CCNA_02569 at 2720.642 kb on - strand, within CCNA_02569 at 2720.642 kb on - strand, within CCNA_02569 at 2720.642 kb on - strand, within CCNA_02569 at 2720.683 kb on + strand, within CCNA_02569 at 2720.691 kb on - strand, within CCNA_02569 at 2720.715 kb on - strand, within CCNA_02569 at 2720.800 kb on + strand, within CCNA_02569 at 2720.808 kb on - strand, within CCNA_02569 at 2720.815 kb on + strand, within CCNA_02569 at 2720.823 kb on - strand, within CCNA_02569 at 2720.825 kb on + strand, within CCNA_02569 at 2720.855 kb on + strand, within CCNA_02569 at 2720.866 kb on + strand, within CCNA_02569 at 2720.930 kb on + strand, within CCNA_02569 at 2720.938 kb on - strand, within CCNA_02569 at 2720.938 kb on - strand, within CCNA_02569 at 2720.938 kb on - strand, within CCNA_02569 at 2720.944 kb on + strand, within CCNA_02569 at 2720.959 kb on + strand, within CCNA_02569 at 2720.986 kb on + strand, within CCNA_02569 at 2721.098 kb on - strand, within CCNA_02569 at 2721.117 kb on + strand, within CCNA_02569 at 2721.125 kb on - strand, within CCNA_02569 at 2721.161 kb on + strand at 2721.206 kb on + strand at 2721.214 kb on - strand at 2721.285 kb on - strand at 2721.316 kb on - strand at 2721.375 kb on + strand at 2721.398 kb on - strand at 2721.403 kb on - strand at 2721.435 kb on - strand at 2721.441 kb on - strand, within CCNA_02570 at 2721.457 kb on + strand, within CCNA_02570 at 2721.460 kb on - strand, within CCNA_02570 at 2721.465 kb on - strand, within CCNA_02570 at 2721.491 kb on + strand, within CCNA_02570 at 2721.491 kb on + strand, within CCNA_02570 at 2721.491 kb on + strand, within CCNA_02570 at 2721.499 kb on - strand, within CCNA_02570 at 2721.499 kb on - strand, within CCNA_02570 at 2721.508 kb on + strand, within CCNA_02570 at 2721.508 kb on + strand, within CCNA_02570 at 2721.508 kb on + strand, within CCNA_02570 at 2721.508 kb on + strand, within CCNA_02570 at 2721.508 kb on + strand, within CCNA_02570 at 2721.508 kb on + strand, within CCNA_02570 at 2721.508 kb on + strand, within CCNA_02570 at 2721.508 kb on + strand, within CCNA_02570 at 2721.508 kb on + strand, within CCNA_02570 at 2721.508 kb on + strand, within CCNA_02570 at 2721.508 kb on + strand, within CCNA_02570 at 2721.508 kb on + strand, within CCNA_02570 at 2721.508 kb on + strand, within CCNA_02570 at 2721.516 kb on - strand, within CCNA_02570 at 2721.516 kb on - strand, within CCNA_02570 at 2721.516 kb on - strand, within CCNA_02570 at 2721.516 kb on - strand, within CCNA_02570 at 2721.516 kb on - strand, within CCNA_02570 at 2721.516 kb on - strand, within CCNA_02570 at 2721.516 kb on - strand, within CCNA_02570 at 2721.518 kb on + strand, within CCNA_02570 at 2721.518 kb on + strand, within CCNA_02570 at 2721.526 kb on - strand, within CCNA_02570 at 2721.526 kb on - strand, within CCNA_02570 at 2721.526 kb on - strand, within CCNA_02570 at 2721.577 kb on - strand, within CCNA_02570 at 2721.600 kb on + strand, within CCNA_02570 at 2721.600 kb on + strand, within CCNA_02570 at 2721.600 kb on + strand, within CCNA_02570 at 2721.600 kb on + strand, within CCNA_02570 at 2721.600 kb on + strand, within CCNA_02570 at 2721.608 kb on - strand, within CCNA_02570 at 2721.608 kb on - strand, within CCNA_02570 at 2721.608 kb on - strand, within CCNA_02570 at 2721.608 kb on - strand, within CCNA_02570 at 2721.608 kb on - strand, within CCNA_02570 at 2721.618 kb on - strand, within CCNA_02570 at 2721.618 kb on - strand, within CCNA_02570 at 2721.631 kb on - strand, within CCNA_02570 at 2721.660 kb on + strand, within CCNA_02570 at 2721.689 kb on + strand, within CCNA_02570 at 2721.702 kb on - strand, within CCNA_02570 at 2721.770 kb on + strand, within CCNA_02570 at 2721.778 kb on - strand, within CCNA_02570 at 2721.837 kb on + strand, within CCNA_02570 at 2721.860 kb on + strand, within CCNA_02570 at 2721.877 kb on + strand, within CCNA_02570 at 2721.885 kb on + strand, within CCNA_02570 at 2721.982 kb on - strand, within CCNA_02570 at 2721.982 kb on - strand, within CCNA_02570 at 2721.993 kb on + strand, within CCNA_02570 at 2722.029 kb on - strand, within CCNA_02570 at 2722.029 kb on - strand, within CCNA_02570 at 2722.044 kb on + strand, within CCNA_02570 at 2722.052 kb on - strand, within CCNA_02570 at 2722.075 kb on - strand, within CCNA_02570 at 2722.075 kb on - strand, within CCNA_02570
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL remove 2,719,568 - CCNA_02568 0.31 -0.7 2,719,584 + CCNA_02568 0.33 -1.4 2,719,594 + CCNA_02568 0.34 -0.3 2,719,599 + CCNA_02568 0.34 +0.4 2,719,643 + CCNA_02568 0.39 -0.6 2,719,648 + CCNA_02568 0.39 -0.1 2,719,677 + CCNA_02568 0.42 +0.4 2,719,695 - CCNA_02568 0.44 +0.0 2,719,709 - CCNA_02568 0.45 -0.2 2,719,741 + CCNA_02568 0.49 -0.2 2,719,741 + CCNA_02568 0.49 -0.2 2,719,766 + CCNA_02568 0.51 +1.3 2,719,786 + CCNA_02568 0.53 +0.7 2,719,786 + CCNA_02568 0.53 +1.0 2,719,818 - CCNA_02568 0.56 -0.3 2,719,834 + CCNA_02568 0.58 -1.5 2,719,851 - CCNA_02568 0.60 +0.4 2,719,882 + CCNA_02568 0.63 +2.4 2,719,882 + CCNA_02568 0.63 +0.1 2,719,919 + CCNA_02568 0.67 +1.5 2,719,931 - CCNA_02568 0.68 -0.1 2,719,943 - CCNA_02568 0.69 -0.0 2,719,974 + CCNA_02568 0.72 -0.3 2,719,979 + CCNA_02568 0.73 +0.3 2,720,003 - CCNA_02568 0.75 -0.2 2,720,011 - CCNA_02568 0.76 +0.8 2,720,013 + CCNA_02568 0.76 -0.1 2,720,078 - CCNA_02568 0.83 -0.9 2,720,087 + CCNA_02568 0.84 +1.2 2,720,139 + CCNA_02568 0.89 +0.5 2,720,158 + +0.4 2,720,246 + +0.9 2,720,246 + -0.0 2,720,256 - -0.7 2,720,258 + -0.6 2,720,259 - +0.1 2,720,279 - +0.6 2,720,326 - -0.0 2,720,337 - -0.0 2,720,370 + +1.1 2,720,397 - +0.2 2,720,436 - -0.5 2,720,438 - -0.6 2,720,438 - +1.0 2,720,452 - +0.4 2,720,461 - +0.3 2,720,475 + +0.7 2,720,634 + CCNA_02569 0.10 -0.4 2,720,634 + CCNA_02569 0.10 -0.4 2,720,637 - CCNA_02569 0.11 -0.7 2,720,642 - CCNA_02569 0.12 +1.8 2,720,642 - CCNA_02569 0.12 -0.1 2,720,642 - CCNA_02569 0.12 +0.6 2,720,642 - CCNA_02569 0.12 +0.1 2,720,642 - CCNA_02569 0.12 -0.4 2,720,683 + CCNA_02569 0.18 -1.5 2,720,691 - CCNA_02569 0.20 +0.3 2,720,715 - CCNA_02569 0.23 +0.6 2,720,800 + CCNA_02569 0.37 +1.6 2,720,808 - CCNA_02569 0.38 -0.4 2,720,815 + CCNA_02569 0.39 -1.2 2,720,823 - CCNA_02569 0.40 -0.3 2,720,825 + CCNA_02569 0.41 -0.4 2,720,855 + CCNA_02569 0.46 +0.3 2,720,866 + CCNA_02569 0.47 -0.9 2,720,930 + CCNA_02569 0.57 +0.1 2,720,938 - CCNA_02569 0.59 +0.1 2,720,938 - CCNA_02569 0.59 +2.6 2,720,938 - CCNA_02569 0.59 +0.6 2,720,944 + CCNA_02569 0.60 -0.8 2,720,959 + CCNA_02569 0.62 +0.2 2,720,986 + CCNA_02569 0.66 +0.3 2,721,098 - CCNA_02569 0.84 -0.8 2,721,117 + CCNA_02569 0.87 -1.5 2,721,125 - CCNA_02569 0.88 +0.3 2,721,161 + -0.5 2,721,206 + -2.6 2,721,214 - -0.4 2,721,285 - +0.2 2,721,316 - -0.5 2,721,375 + -2.4 2,721,398 - -1.8 2,721,403 - -0.9 2,721,435 - -1.4 2,721,441 - CCNA_02570 0.10 +0.2 2,721,457 + CCNA_02570 0.11 +0.8 2,721,460 - CCNA_02570 0.12 -0.4 2,721,465 - CCNA_02570 0.12 +0.1 2,721,491 + CCNA_02570 0.14 +0.5 2,721,491 + CCNA_02570 0.14 -0.5 2,721,491 + CCNA_02570 0.14 -2.1 2,721,499 - CCNA_02570 0.15 -2.7 2,721,499 - CCNA_02570 0.15 +0.8 2,721,508 + CCNA_02570 0.15 -0.0 2,721,508 + CCNA_02570 0.15 -0.8 2,721,508 + CCNA_02570 0.15 -1.7 2,721,508 + CCNA_02570 0.15 +0.2 2,721,508 + CCNA_02570 0.15 -0.4 2,721,508 + CCNA_02570 0.15 -0.6 2,721,508 + CCNA_02570 0.15 +1.2 2,721,508 + CCNA_02570 0.15 -0.4 2,721,508 + CCNA_02570 0.15 -0.2 2,721,508 + CCNA_02570 0.15 +0.1 2,721,508 + CCNA_02570 0.15 -3.2 2,721,508 + CCNA_02570 0.15 -0.5 2,721,508 + CCNA_02570 0.15 -0.3 2,721,516 - CCNA_02570 0.16 -1.0 2,721,516 - CCNA_02570 0.16 +0.3 2,721,516 - CCNA_02570 0.16 +0.9 2,721,516 - CCNA_02570 0.16 +0.8 2,721,516 - CCNA_02570 0.16 -0.5 2,721,516 - CCNA_02570 0.16 -0.3 2,721,516 - CCNA_02570 0.16 -0.9 2,721,518 + CCNA_02570 0.16 -0.3 2,721,518 + CCNA_02570 0.16 +0.7 2,721,526 - CCNA_02570 0.17 +0.4 2,721,526 - CCNA_02570 0.17 -1.6 2,721,526 - CCNA_02570 0.17 -0.3 2,721,577 - CCNA_02570 0.20 -0.3 2,721,600 + CCNA_02570 0.22 +0.1 2,721,600 + CCNA_02570 0.22 +0.5 2,721,600 + CCNA_02570 0.22 +0.1 2,721,600 + CCNA_02570 0.22 -0.9 2,721,600 + CCNA_02570 0.22 +0.0 2,721,608 - CCNA_02570 0.23 -0.0 2,721,608 - CCNA_02570 0.23 +0.3 2,721,608 - CCNA_02570 0.23 +0.2 2,721,608 - CCNA_02570 0.23 -0.3 2,721,608 - CCNA_02570 0.23 +0.7 2,721,618 - CCNA_02570 0.23 +0.1 2,721,618 - CCNA_02570 0.23 -0.3 2,721,631 - CCNA_02570 0.24 -1.3 2,721,660 + CCNA_02570 0.27 +0.2 2,721,689 + CCNA_02570 0.29 -1.5 2,721,702 - CCNA_02570 0.30 -0.3 2,721,770 + CCNA_02570 0.35 -0.8 2,721,778 - CCNA_02570 0.35 -0.5 2,721,837 + CCNA_02570 0.40 -0.2 2,721,860 + CCNA_02570 0.42 +2.9 2,721,877 + CCNA_02570 0.43 -0.5 2,721,885 + CCNA_02570 0.43 -1.3 2,721,982 - CCNA_02570 0.51 +0.8 2,721,982 - CCNA_02570 0.51 -0.4 2,721,993 + CCNA_02570 0.52 -0.0 2,722,029 - CCNA_02570 0.54 -0.6 2,722,029 - CCNA_02570 0.54 +0.8 2,722,044 + CCNA_02570 0.55 -0.7 2,722,052 - CCNA_02570 0.56 -2.0 2,722,075 - CCNA_02570 0.58 +0.4 2,722,075 - CCNA_02570 0.58 -0.0
Or see this region's nucleotide sequence