Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_02463

Experiment: PYE with CHIR-090 10 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02461 and CCNA_02462 are separated by 183 nucleotidesCCNA_02462 and CCNA_02463 are separated by 358 nucleotidesCCNA_02463 and CCNA_02464 are separated by 2 nucleotides CCNA_02461: CCNA_02461 - hypothetical protein, at 2,603,706 to 2,604,170 _02461 CCNA_02462: CCNA_02462 - hypothetical protein, at 2,604,354 to 2,604,671 _02462 CCNA_02463: CCNA_02463 - UDP-N-acetylglucosamine 4-epimerase, at 2,605,030 to 2,606,004 _02463 CCNA_02464: CCNA_02464 - UDP-glucose 6-dehydrogenase, at 2,606,007 to 2,607,314 _02464 Position (kb) 2605 2606 2607Strain fitness (log2 ratio) -2 -1 0 1at 2604.045 kb on - strand, within CCNA_02461at 2604.058 kb on - strand, within CCNA_02461at 2604.114 kb on + strand, within CCNA_02461at 2604.185 kb on + strandat 2604.185 kb on + strandat 2604.244 kb on + strandat 2604.287 kb on + strandat 2604.364 kb on + strandat 2604.364 kb on + strandat 2604.372 kb on - strandat 2604.393 kb on + strand, within CCNA_02462at 2604.409 kb on - strand, within CCNA_02462at 2604.422 kb on - strand, within CCNA_02462at 2604.444 kb on - strand, within CCNA_02462at 2604.518 kb on - strand, within CCNA_02462at 2604.518 kb on - strand, within CCNA_02462at 2604.548 kb on + strand, within CCNA_02462at 2604.566 kb on + strand, within CCNA_02462at 2604.566 kb on - strand, within CCNA_02462at 2604.572 kb on + strand, within CCNA_02462at 2604.633 kb on - strand, within CCNA_02462at 2604.665 kb on + strandat 2604.689 kb on - strandat 2604.762 kb on + strandat 2604.770 kb on - strandat 2604.840 kb on - strandat 2604.844 kb on + strandat 2604.871 kb on - strandat 2604.871 kb on - strandat 2604.878 kb on - strandat 2604.910 kb on + strandat 2604.919 kb on - strandat 2604.927 kb on + strandat 2604.929 kb on - strandat 2604.935 kb on - strandat 2604.948 kb on - strandat 2604.966 kb on + strandat 2604.968 kb on + strandat 2604.993 kb on - strandat 2605.028 kb on + strandat 2605.089 kb on + strandat 2605.414 kb on + strand, within CCNA_02463at 2605.486 kb on - strand, within CCNA_02463at 2605.627 kb on + strand, within CCNA_02463at 2605.698 kb on - strand, within CCNA_02463at 2606.005 kb on + strandat 2606.030 kb on + strandat 2606.059 kb on + strandat 2606.103 kb on - strandat 2606.103 kb on - strandat 2606.103 kb on - strandat 2606.115 kb on - strandat 2606.115 kb on - strandat 2606.409 kb on - strand, within CCNA_02464at 2606.445 kb on - strand, within CCNA_02464at 2606.445 kb on - strand, within CCNA_02464at 2606.445 kb on - strand, within CCNA_02464at 2606.474 kb on + strand, within CCNA_02464at 2606.479 kb on + strand, within CCNA_02464at 2606.479 kb on + strand, within CCNA_02464at 2606.479 kb on + strand, within CCNA_02464at 2606.481 kb on + strand, within CCNA_02464at 2606.494 kb on + strand, within CCNA_02464at 2606.494 kb on + strand, within CCNA_02464at 2606.494 kb on + strand, within CCNA_02464at 2606.494 kb on + strand, within CCNA_02464at 2606.494 kb on + strand, within CCNA_02464at 2606.494 kb on + strand, within CCNA_02464at 2606.494 kb on + strand, within CCNA_02464at 2606.779 kb on + strand, within CCNA_02464at 2606.866 kb on + strand, within CCNA_02464at 2606.878 kb on + strand, within CCNA_02464at 2606.878 kb on + strand, within CCNA_02464at 2606.925 kb on - strand, within CCNA_02464

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL
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2,604,045 - CCNA_02461 0.73 +0.6
2,604,058 - CCNA_02461 0.76 +0.1
2,604,114 + CCNA_02461 0.88 -0.5
2,604,185 + -1.2
2,604,185 + +0.6
2,604,244 + -0.4
2,604,287 + +0.4
2,604,364 + -0.3
2,604,364 + +0.0
2,604,372 - -1.3
2,604,393 + CCNA_02462 0.12 -0.4
2,604,409 - CCNA_02462 0.17 -0.3
2,604,422 - CCNA_02462 0.21 +1.2
2,604,444 - CCNA_02462 0.28 -1.6
2,604,518 - CCNA_02462 0.52 -0.5
2,604,518 - CCNA_02462 0.52 -0.5
2,604,548 + CCNA_02462 0.61 +0.1
2,604,566 + CCNA_02462 0.67 -0.7
2,604,566 - CCNA_02462 0.67 +0.4
2,604,572 + CCNA_02462 0.69 -0.7
2,604,633 - CCNA_02462 0.88 -1.7
2,604,665 + -0.8
2,604,689 - -1.2
2,604,762 + -0.7
2,604,770 - +0.2
2,604,840 - -2.5
2,604,844 + -1.1
2,604,871 - -0.9
2,604,871 - -0.1
2,604,878 - -1.3
2,604,910 + +0.2
2,604,919 - +0.3
2,604,927 + -1.8
2,604,929 - -1.2
2,604,935 - -0.3
2,604,948 - -0.9
2,604,966 + -0.3
2,604,968 + -0.1
2,604,993 - -0.2
2,605,028 + +0.8
2,605,089 + -0.9
2,605,414 + CCNA_02463 0.39 +0.3
2,605,486 - CCNA_02463 0.47 +0.1
2,605,627 + CCNA_02463 0.61 +0.6
2,605,698 - CCNA_02463 0.69 +0.3
2,606,005 + -1.0
2,606,030 + +0.5
2,606,059 + -0.2
2,606,103 - +0.3
2,606,103 - +0.7
2,606,103 - +0.1
2,606,115 - +0.0
2,606,115 - -0.8
2,606,409 - CCNA_02464 0.31 +0.5
2,606,445 - CCNA_02464 0.33 +1.5
2,606,445 - CCNA_02464 0.33 -0.2
2,606,445 - CCNA_02464 0.33 -0.0
2,606,474 + CCNA_02464 0.36 +0.5
2,606,479 + CCNA_02464 0.36 -0.3
2,606,479 + CCNA_02464 0.36 -0.3
2,606,479 + CCNA_02464 0.36 +0.3
2,606,481 + CCNA_02464 0.36 +1.0
2,606,494 + CCNA_02464 0.37 -0.3
2,606,494 + CCNA_02464 0.37 +0.0
2,606,494 + CCNA_02464 0.37 +1.5
2,606,494 + CCNA_02464 0.37 -0.2
2,606,494 + CCNA_02464 0.37 -0.3
2,606,494 + CCNA_02464 0.37 -0.5
2,606,494 + CCNA_02464 0.37 -0.5
2,606,779 + CCNA_02464 0.59 -1.0
2,606,866 + CCNA_02464 0.66 -0.6
2,606,878 + CCNA_02464 0.67 -0.0
2,606,878 + CCNA_02464 0.67 +0.2
2,606,925 - CCNA_02464 0.70 +0.5

Or see this region's nucleotide sequence