Experiment: PYE with CHIR-090 10 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02461 and CCNA_02462 are separated by 183 nucleotides CCNA_02462 and CCNA_02463 are separated by 358 nucleotides CCNA_02463 and CCNA_02464 are separated by 2 nucleotides
CCNA_02461: CCNA_02461 - hypothetical protein, at 2,603,706 to 2,604,170
_02461
CCNA_02462: CCNA_02462 - hypothetical protein, at 2,604,354 to 2,604,671
_02462
CCNA_02463: CCNA_02463 - UDP-N-acetylglucosamine 4-epimerase, at 2,605,030 to 2,606,004
_02463
CCNA_02464: CCNA_02464 - UDP-glucose 6-dehydrogenase, at 2,606,007 to 2,607,314
_02464
Position (kb)
2605
2606
2607 Strain fitness (log2 ratio)
-2
-1
0
1 at 2604.045 kb on - strand, within CCNA_02461 at 2604.058 kb on - strand, within CCNA_02461 at 2604.114 kb on + strand, within CCNA_02461 at 2604.185 kb on + strand at 2604.185 kb on + strand at 2604.244 kb on + strand at 2604.287 kb on + strand at 2604.364 kb on + strand at 2604.364 kb on + strand at 2604.372 kb on - strand at 2604.393 kb on + strand, within CCNA_02462 at 2604.409 kb on - strand, within CCNA_02462 at 2604.422 kb on - strand, within CCNA_02462 at 2604.444 kb on - strand, within CCNA_02462 at 2604.518 kb on - strand, within CCNA_02462 at 2604.518 kb on - strand, within CCNA_02462 at 2604.548 kb on + strand, within CCNA_02462 at 2604.566 kb on + strand, within CCNA_02462 at 2604.566 kb on - strand, within CCNA_02462 at 2604.572 kb on + strand, within CCNA_02462 at 2604.633 kb on - strand, within CCNA_02462 at 2604.665 kb on + strand at 2604.689 kb on - strand at 2604.762 kb on + strand at 2604.770 kb on - strand at 2604.840 kb on - strand at 2604.844 kb on + strand at 2604.871 kb on - strand at 2604.871 kb on - strand at 2604.878 kb on - strand at 2604.910 kb on + strand at 2604.919 kb on - strand at 2604.927 kb on + strand at 2604.929 kb on - strand at 2604.935 kb on - strand at 2604.948 kb on - strand at 2604.966 kb on + strand at 2604.968 kb on + strand at 2604.993 kb on - strand at 2605.028 kb on + strand at 2605.089 kb on + strand at 2605.414 kb on + strand, within CCNA_02463 at 2605.486 kb on - strand, within CCNA_02463 at 2605.627 kb on + strand, within CCNA_02463 at 2605.698 kb on - strand, within CCNA_02463 at 2606.005 kb on + strand at 2606.030 kb on + strand at 2606.059 kb on + strand at 2606.103 kb on - strand at 2606.103 kb on - strand at 2606.103 kb on - strand at 2606.115 kb on - strand at 2606.115 kb on - strand at 2606.409 kb on - strand, within CCNA_02464 at 2606.445 kb on - strand, within CCNA_02464 at 2606.445 kb on - strand, within CCNA_02464 at 2606.445 kb on - strand, within CCNA_02464 at 2606.474 kb on + strand, within CCNA_02464 at 2606.479 kb on + strand, within CCNA_02464 at 2606.479 kb on + strand, within CCNA_02464 at 2606.479 kb on + strand, within CCNA_02464 at 2606.481 kb on + strand, within CCNA_02464 at 2606.494 kb on + strand, within CCNA_02464 at 2606.494 kb on + strand, within CCNA_02464 at 2606.494 kb on + strand, within CCNA_02464 at 2606.494 kb on + strand, within CCNA_02464 at 2606.494 kb on + strand, within CCNA_02464 at 2606.494 kb on + strand, within CCNA_02464 at 2606.494 kb on + strand, within CCNA_02464 at 2606.779 kb on + strand, within CCNA_02464 at 2606.866 kb on + strand, within CCNA_02464 at 2606.878 kb on + strand, within CCNA_02464 at 2606.878 kb on + strand, within CCNA_02464 at 2606.925 kb on - strand, within CCNA_02464
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL remove 2,604,045 - CCNA_02461 0.73 +0.6 2,604,058 - CCNA_02461 0.76 +0.1 2,604,114 + CCNA_02461 0.88 -0.5 2,604,185 + -1.2 2,604,185 + +0.6 2,604,244 + -0.4 2,604,287 + +0.4 2,604,364 + -0.3 2,604,364 + +0.0 2,604,372 - -1.3 2,604,393 + CCNA_02462 0.12 -0.4 2,604,409 - CCNA_02462 0.17 -0.3 2,604,422 - CCNA_02462 0.21 +1.2 2,604,444 - CCNA_02462 0.28 -1.6 2,604,518 - CCNA_02462 0.52 -0.5 2,604,518 - CCNA_02462 0.52 -0.5 2,604,548 + CCNA_02462 0.61 +0.1 2,604,566 + CCNA_02462 0.67 -0.7 2,604,566 - CCNA_02462 0.67 +0.4 2,604,572 + CCNA_02462 0.69 -0.7 2,604,633 - CCNA_02462 0.88 -1.7 2,604,665 + -0.8 2,604,689 - -1.2 2,604,762 + -0.7 2,604,770 - +0.2 2,604,840 - -2.5 2,604,844 + -1.1 2,604,871 - -0.9 2,604,871 - -0.1 2,604,878 - -1.3 2,604,910 + +0.2 2,604,919 - +0.3 2,604,927 + -1.8 2,604,929 - -1.2 2,604,935 - -0.3 2,604,948 - -0.9 2,604,966 + -0.3 2,604,968 + -0.1 2,604,993 - -0.2 2,605,028 + +0.8 2,605,089 + -0.9 2,605,414 + CCNA_02463 0.39 +0.3 2,605,486 - CCNA_02463 0.47 +0.1 2,605,627 + CCNA_02463 0.61 +0.6 2,605,698 - CCNA_02463 0.69 +0.3 2,606,005 + -1.0 2,606,030 + +0.5 2,606,059 + -0.2 2,606,103 - +0.3 2,606,103 - +0.7 2,606,103 - +0.1 2,606,115 - +0.0 2,606,115 - -0.8 2,606,409 - CCNA_02464 0.31 +0.5 2,606,445 - CCNA_02464 0.33 +1.5 2,606,445 - CCNA_02464 0.33 -0.2 2,606,445 - CCNA_02464 0.33 -0.0 2,606,474 + CCNA_02464 0.36 +0.5 2,606,479 + CCNA_02464 0.36 -0.3 2,606,479 + CCNA_02464 0.36 -0.3 2,606,479 + CCNA_02464 0.36 +0.3 2,606,481 + CCNA_02464 0.36 +1.0 2,606,494 + CCNA_02464 0.37 -0.3 2,606,494 + CCNA_02464 0.37 +0.0 2,606,494 + CCNA_02464 0.37 +1.5 2,606,494 + CCNA_02464 0.37 -0.2 2,606,494 + CCNA_02464 0.37 -0.3 2,606,494 + CCNA_02464 0.37 -0.5 2,606,494 + CCNA_02464 0.37 -0.5 2,606,779 + CCNA_02464 0.59 -1.0 2,606,866 + CCNA_02464 0.66 -0.6 2,606,878 + CCNA_02464 0.67 -0.0 2,606,878 + CCNA_02464 0.67 +0.2 2,606,925 - CCNA_02464 0.70 +0.5
Or see this region's nucleotide sequence