Experiment: PYE with CHIR-090 10 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02324 and CCNA_02325 are separated by 217 nucleotides CCNA_02325 and CCNA_02326 are separated by 117 nucleotides
CCNA_02324: CCNA_02324 - heat shock protein 33 hsp33, at 2,465,823 to 2,466,731
_02324
CCNA_02325: CCNA_02325 - ornithine carbamoyltransferase, at 2,466,949 to 2,467,884
_02325
CCNA_02326: CCNA_02326 - acetylornithine aminotransferase/succinyldiaminopimelate aminotransferase, at 2,468,002 to 2,469,219
_02326
Position (kb)
2466
2467
2468 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2465.954 kb on + strand, within CCNA_02324 at 2465.954 kb on + strand, within CCNA_02324 at 2465.962 kb on - strand, within CCNA_02324 at 2466.007 kb on - strand, within CCNA_02324 at 2466.033 kb on - strand, within CCNA_02324 at 2466.043 kb on + strand, within CCNA_02324 at 2466.043 kb on + strand, within CCNA_02324 at 2466.151 kb on + strand, within CCNA_02324 at 2466.181 kb on + strand, within CCNA_02324 at 2466.189 kb on - strand, within CCNA_02324 at 2466.189 kb on - strand, within CCNA_02324 at 2466.191 kb on + strand, within CCNA_02324 at 2466.191 kb on + strand, within CCNA_02324 at 2466.191 kb on + strand, within CCNA_02324 at 2466.194 kb on - strand, within CCNA_02324 at 2466.194 kb on - strand, within CCNA_02324 at 2466.196 kb on + strand, within CCNA_02324 at 2466.204 kb on - strand, within CCNA_02324 at 2466.234 kb on + strand, within CCNA_02324 at 2466.248 kb on + strand, within CCNA_02324 at 2466.250 kb on + strand, within CCNA_02324 at 2466.255 kb on + strand, within CCNA_02324 at 2466.256 kb on - strand, within CCNA_02324 at 2466.272 kb on + strand, within CCNA_02324 at 2466.272 kb on + strand, within CCNA_02324 at 2466.280 kb on - strand, within CCNA_02324 at 2466.280 kb on - strand, within CCNA_02324 at 2466.280 kb on - strand, within CCNA_02324 at 2466.280 kb on - strand, within CCNA_02324 at 2466.280 kb on - strand, within CCNA_02324 at 2466.294 kb on - strand, within CCNA_02324 at 2466.294 kb on - strand, within CCNA_02324 at 2466.496 kb on + strand, within CCNA_02324 at 2466.504 kb on - strand, within CCNA_02324 at 2466.538 kb on + strand, within CCNA_02324 at 2466.595 kb on + strand, within CCNA_02324 at 2466.727 kb on + strand at 2466.735 kb on - strand at 2466.825 kb on - strand at 2467.047 kb on - strand, within CCNA_02325 at 2467.732 kb on - strand, within CCNA_02325 at 2467.749 kb on - strand, within CCNA_02325 at 2467.841 kb on - strand at 2467.856 kb on - strand at 2467.924 kb on + strand at 2467.938 kb on + strand at 2467.958 kb on - strand at 2467.958 kb on - strand at 2467.959 kb on - strand at 2468.012 kb on + strand at 2468.118 kb on - strand at 2468.192 kb on - strand, within CCNA_02326 at 2468.353 kb on - strand, within CCNA_02326 at 2468.432 kb on - strand, within CCNA_02326 at 2468.637 kb on - strand, within CCNA_02326
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL remove 2,465,954 + CCNA_02324 0.14 -0.6 2,465,954 + CCNA_02324 0.14 +0.2 2,465,962 - CCNA_02324 0.15 -1.7 2,466,007 - CCNA_02324 0.20 +0.5 2,466,033 - CCNA_02324 0.23 +0.0 2,466,043 + CCNA_02324 0.24 +0.3 2,466,043 + CCNA_02324 0.24 +1.1 2,466,151 + CCNA_02324 0.36 +0.0 2,466,181 + CCNA_02324 0.39 +0.2 2,466,189 - CCNA_02324 0.40 +0.9 2,466,189 - CCNA_02324 0.40 -0.1 2,466,191 + CCNA_02324 0.40 -0.2 2,466,191 + CCNA_02324 0.40 +0.6 2,466,191 + CCNA_02324 0.40 -2.0 2,466,194 - CCNA_02324 0.41 -0.6 2,466,194 - CCNA_02324 0.41 +0.1 2,466,196 + CCNA_02324 0.41 -1.6 2,466,204 - CCNA_02324 0.42 +0.1 2,466,234 + CCNA_02324 0.45 -0.1 2,466,248 + CCNA_02324 0.47 +0.3 2,466,250 + CCNA_02324 0.47 +0.7 2,466,255 + CCNA_02324 0.48 -0.7 2,466,256 - CCNA_02324 0.48 +0.8 2,466,272 + CCNA_02324 0.49 -2.7 2,466,272 + CCNA_02324 0.49 -0.2 2,466,280 - CCNA_02324 0.50 +0.5 2,466,280 - CCNA_02324 0.50 +0.2 2,466,280 - CCNA_02324 0.50 +1.1 2,466,280 - CCNA_02324 0.50 -0.2 2,466,280 - CCNA_02324 0.50 +0.6 2,466,294 - CCNA_02324 0.52 +1.0 2,466,294 - CCNA_02324 0.52 -0.2 2,466,496 + CCNA_02324 0.74 -0.8 2,466,504 - CCNA_02324 0.75 -0.5 2,466,538 + CCNA_02324 0.79 +0.6 2,466,595 + CCNA_02324 0.85 +0.6 2,466,727 + -0.4 2,466,735 - +0.5 2,466,825 - +0.4 2,467,047 - CCNA_02325 0.10 -1.6 2,467,732 - CCNA_02325 0.84 -3.0 2,467,749 - CCNA_02325 0.85 -1.6 2,467,841 - -1.3 2,467,856 - +0.3 2,467,924 + -0.1 2,467,938 + +0.3 2,467,958 - -2.8 2,467,958 - +0.3 2,467,959 - +0.7 2,468,012 + +0.0 2,468,118 - +0.3 2,468,192 - CCNA_02326 0.16 -0.4 2,468,353 - CCNA_02326 0.29 -0.1 2,468,432 - CCNA_02326 0.35 -1.3 2,468,637 - CCNA_02326 0.52 +1.6
Or see this region's nucleotide sequence