Experiment: PYE with CHIR-090 10 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02307 and CCNA_02308 are separated by 126 nucleotides CCNA_02308 and CCNA_02309 are separated by 187 nucleotides CCNA_02309 and CCNA_02310 are separated by 153 nucleotides
CCNA_02307: CCNA_02307 - cyclohexadienyl dehydrogenase, at 2,452,412 to 2,453,350
_02307
CCNA_02308: CCNA_02308 - hypothetical protein, at 2,453,477 to 2,454,331
_02308
CCNA_02309: CCNA_02309 - EF hand domain protein, at 2,454,519 to 2,454,854
_02309
CCNA_02310: CCNA_02310 - glycosyl hydrolase, family 9, at 2,455,008 to 2,456,885
_02310
Position (kb)
2453
2454
2455 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2452.497 kb on + strand at 2452.567 kb on + strand, within CCNA_02307 at 2452.695 kb on + strand, within CCNA_02307 at 2452.703 kb on - strand, within CCNA_02307 at 2452.725 kb on + strand, within CCNA_02307 at 2452.735 kb on + strand, within CCNA_02307 at 2452.736 kb on + strand, within CCNA_02307 at 2452.780 kb on - strand, within CCNA_02307 at 2452.795 kb on + strand, within CCNA_02307 at 2452.927 kb on - strand, within CCNA_02307 at 2452.986 kb on - strand, within CCNA_02307 at 2452.997 kb on + strand, within CCNA_02307 at 2453.024 kb on + strand, within CCNA_02307 at 2453.032 kb on - strand, within CCNA_02307 at 2453.168 kb on + strand, within CCNA_02307 at 2453.168 kb on + strand, within CCNA_02307 at 2453.168 kb on + strand, within CCNA_02307 at 2453.176 kb on - strand, within CCNA_02307 at 2453.300 kb on + strand at 2453.300 kb on + strand at 2453.300 kb on + strand at 2453.308 kb on - strand at 2453.308 kb on - strand at 2453.344 kb on + strand at 2453.345 kb on + strand at 2453.352 kb on - strand at 2453.353 kb on - strand at 2453.420 kb on - strand at 2453.433 kb on - strand at 2453.479 kb on + strand at 2453.506 kb on - strand at 2453.506 kb on - strand at 2453.535 kb on + strand at 2453.543 kb on - strand at 2453.543 kb on - strand at 2453.543 kb on - strand at 2453.553 kb on - strand at 2453.592 kb on + strand, within CCNA_02308 at 2453.600 kb on - strand, within CCNA_02308 at 2453.610 kb on + strand, within CCNA_02308 at 2453.659 kb on - strand, within CCNA_02308 at 2453.660 kb on + strand, within CCNA_02308 at 2453.698 kb on - strand, within CCNA_02308 at 2453.706 kb on + strand, within CCNA_02308 at 2453.724 kb on - strand, within CCNA_02308 at 2453.736 kb on - strand, within CCNA_02308 at 2453.751 kb on - strand, within CCNA_02308 at 2453.779 kb on - strand, within CCNA_02308 at 2453.818 kb on + strand, within CCNA_02308 at 2453.844 kb on + strand, within CCNA_02308 at 2453.869 kb on - strand, within CCNA_02308 at 2453.869 kb on - strand, within CCNA_02308 at 2453.879 kb on - strand, within CCNA_02308 at 2453.915 kb on - strand, within CCNA_02308 at 2453.964 kb on - strand, within CCNA_02308 at 2453.964 kb on - strand, within CCNA_02308 at 2453.966 kb on + strand, within CCNA_02308 at 2453.990 kb on + strand, within CCNA_02308 at 2454.037 kb on - strand, within CCNA_02308 at 2454.123 kb on + strand, within CCNA_02308 at 2454.151 kb on + strand, within CCNA_02308 at 2454.222 kb on + strand, within CCNA_02308 at 2454.230 kb on - strand, within CCNA_02308 at 2454.230 kb on - strand, within CCNA_02308 at 2454.249 kb on + strand at 2454.254 kb on + strand at 2454.254 kb on + strand at 2454.257 kb on - strand at 2454.267 kb on - strand at 2454.317 kb on - strand at 2454.323 kb on + strand at 2454.339 kb on + strand at 2454.344 kb on + strand at 2454.346 kb on + strand at 2454.352 kb on - strand at 2454.354 kb on - strand at 2454.362 kb on - strand at 2454.410 kb on - strand at 2454.475 kb on + strand at 2454.507 kb on - strand at 2454.653 kb on + strand, within CCNA_02309 at 2454.689 kb on + strand, within CCNA_02309 at 2454.848 kb on + strand at 2454.848 kb on + strand at 2454.856 kb on - strand at 2454.856 kb on - strand at 2454.870 kb on + strand at 2454.884 kb on + strand at 2454.982 kb on + strand at 2455.040 kb on + strand at 2455.071 kb on + strand at 2455.112 kb on + strand at 2455.146 kb on - strand at 2455.166 kb on + strand at 2455.172 kb on - strand at 2455.174 kb on - strand at 2455.174 kb on - strand at 2455.181 kb on + strand at 2455.181 kb on + strand at 2455.181 kb on + strand at 2455.181 kb on + strand at 2455.181 kb on + strand at 2455.181 kb on + strand at 2455.188 kb on + strand at 2455.189 kb on - strand at 2455.201 kb on + strand, within CCNA_02310 at 2455.259 kb on + strand, within CCNA_02310 at 2455.269 kb on + strand, within CCNA_02310 at 2455.276 kb on + strand, within CCNA_02310
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL remove 2,452,497 + +0.2 2,452,567 + CCNA_02307 0.17 +1.4 2,452,695 + CCNA_02307 0.30 +0.7 2,452,703 - CCNA_02307 0.31 -1.5 2,452,725 + CCNA_02307 0.33 -0.1 2,452,735 + CCNA_02307 0.34 +0.2 2,452,736 + CCNA_02307 0.35 +0.5 2,452,780 - CCNA_02307 0.39 +1.0 2,452,795 + CCNA_02307 0.41 -0.5 2,452,927 - CCNA_02307 0.55 -0.1 2,452,986 - CCNA_02307 0.61 -0.7 2,452,997 + CCNA_02307 0.62 +0.5 2,453,024 + CCNA_02307 0.65 -0.8 2,453,032 - CCNA_02307 0.66 +1.6 2,453,168 + CCNA_02307 0.81 +1.8 2,453,168 + CCNA_02307 0.81 +0.9 2,453,168 + CCNA_02307 0.81 +0.5 2,453,176 - CCNA_02307 0.81 +2.1 2,453,300 + +0.4 2,453,300 + +0.1 2,453,300 + +0.9 2,453,308 - -0.1 2,453,308 - +0.7 2,453,344 + -1.5 2,453,345 + +0.3 2,453,352 - +0.1 2,453,353 - +0.0 2,453,420 - -0.4 2,453,433 - -0.6 2,453,479 + -0.7 2,453,506 - -0.4 2,453,506 - -0.4 2,453,535 + +0.6 2,453,543 - +0.6 2,453,543 - +0.2 2,453,543 - -1.6 2,453,553 - -0.7 2,453,592 + CCNA_02308 0.13 -0.3 2,453,600 - CCNA_02308 0.14 +1.6 2,453,610 + CCNA_02308 0.16 -1.2 2,453,659 - CCNA_02308 0.21 -0.1 2,453,660 + CCNA_02308 0.21 +0.6 2,453,698 - CCNA_02308 0.26 -1.2 2,453,706 + CCNA_02308 0.27 +0.8 2,453,724 - CCNA_02308 0.29 -0.9 2,453,736 - CCNA_02308 0.30 -0.6 2,453,751 - CCNA_02308 0.32 +1.9 2,453,779 - CCNA_02308 0.35 +0.2 2,453,818 + CCNA_02308 0.40 -1.9 2,453,844 + CCNA_02308 0.43 -0.3 2,453,869 - CCNA_02308 0.46 +0.2 2,453,869 - CCNA_02308 0.46 -0.1 2,453,879 - CCNA_02308 0.47 +0.0 2,453,915 - CCNA_02308 0.51 +1.0 2,453,964 - CCNA_02308 0.57 -0.6 2,453,964 - CCNA_02308 0.57 +0.1 2,453,966 + CCNA_02308 0.57 -0.3 2,453,990 + CCNA_02308 0.60 -0.2 2,454,037 - CCNA_02308 0.65 +0.1 2,454,123 + CCNA_02308 0.76 -0.9 2,454,151 + CCNA_02308 0.79 +0.7 2,454,222 + CCNA_02308 0.87 -0.2 2,454,230 - CCNA_02308 0.88 +0.0 2,454,230 - CCNA_02308 0.88 -0.4 2,454,249 + +0.9 2,454,254 + -1.2 2,454,254 + -0.0 2,454,257 - -1.0 2,454,267 - -0.4 2,454,317 - -0.3 2,454,323 + +0.1 2,454,339 + +0.6 2,454,344 + -0.6 2,454,346 + -0.5 2,454,352 - -0.2 2,454,354 - +0.6 2,454,362 - -2.3 2,454,410 - -0.8 2,454,475 + +0.6 2,454,507 - +1.3 2,454,653 + CCNA_02309 0.40 +1.3 2,454,689 + CCNA_02309 0.51 +0.9 2,454,848 + -1.7 2,454,848 + -0.3 2,454,856 - -0.6 2,454,856 - -0.7 2,454,870 + -0.2 2,454,884 + +0.6 2,454,982 + -0.4 2,455,040 + -0.7 2,455,071 + -0.9 2,455,112 + +0.1 2,455,146 - +0.9 2,455,166 + +0.0 2,455,172 - +0.3 2,455,174 - +0.1 2,455,174 - +0.4 2,455,181 + -2.2 2,455,181 + -0.1 2,455,181 + +0.4 2,455,181 + +0.5 2,455,181 + -2.2 2,455,181 + +0.3 2,455,188 + -1.3 2,455,189 - -0.4 2,455,201 + CCNA_02310 0.10 +0.8 2,455,259 + CCNA_02310 0.13 +0.5 2,455,269 + CCNA_02310 0.14 -0.7 2,455,276 + CCNA_02310 0.14 -0.2
Or see this region's nucleotide sequence