Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_02067

Experiment: PYE with CHIR-090 10 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02065 and CCNA_02066 are separated by 134 nucleotidesCCNA_02066 and CCNA_02067 are separated by 71 nucleotidesCCNA_02067 and CCNA_02068 are separated by 95 nucleotidesCCNA_02068 and CCNA_02069 overlap by 1 nucleotides CCNA_02065: CCNA_02065 - acylamino-acid-releasing enzyme, at 2,215,780 to 2,217,882 _02065 CCNA_02066: CCNA_02066 - phytoene/squalene synthase family protein, at 2,218,017 to 2,218,730 _02066 CCNA_02067: CCNA_02067 - conserved membrane spanning protein, at 2,218,802 to 2,219,416 _02067 CCNA_02068: CCNA_02068 - Mth938-like membrane protein, at 2,219,512 to 2,219,865 _02068 CCNA_02069: CCNA_02069 - protein translocase subunit secF, at 2,219,865 to 2,220,830 _02069 Position (kb) 2218 2219 2220Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2217.802 kb on + strandat 2217.810 kb on - strandat 2217.822 kb on + strandat 2217.900 kb on + strandat 2217.908 kb on - strandat 2217.944 kb on - strandat 2217.959 kb on + strandat 2217.975 kb on - strandat 2217.999 kb on + strandat 2218.168 kb on + strand, within CCNA_02066at 2218.176 kb on - strand, within CCNA_02066at 2218.176 kb on - strand, within CCNA_02066at 2218.478 kb on - strand, within CCNA_02066at 2218.478 kb on - strand, within CCNA_02066at 2218.478 kb on - strand, within CCNA_02066at 2218.553 kb on - strand, within CCNA_02066at 2218.675 kb on - strandat 2218.680 kb on + strandat 2218.726 kb on + strandat 2218.840 kb on + strandat 2218.866 kb on - strand, within CCNA_02067at 2218.902 kb on + strand, within CCNA_02067at 2218.904 kb on - strand, within CCNA_02067at 2218.904 kb on - strand, within CCNA_02067at 2218.973 kb on - strand, within CCNA_02067at 2218.997 kb on + strand, within CCNA_02067at 2219.010 kb on - strand, within CCNA_02067at 2219.018 kb on + strand, within CCNA_02067at 2219.018 kb on + strand, within CCNA_02067at 2219.049 kb on - strand, within CCNA_02067at 2219.073 kb on - strand, within CCNA_02067at 2219.075 kb on - strand, within CCNA_02067at 2219.126 kb on + strand, within CCNA_02067at 2219.153 kb on - strand, within CCNA_02067at 2219.249 kb on - strand, within CCNA_02067at 2219.368 kb on - strandat 2219.528 kb on + strandat 2219.554 kb on + strand, within CCNA_02068at 2219.562 kb on - strand, within CCNA_02068at 2219.588 kb on + strand, within CCNA_02068at 2219.627 kb on - strand, within CCNA_02068at 2219.654 kb on + strand, within CCNA_02068at 2219.659 kb on + strand, within CCNA_02068at 2219.659 kb on + strand, within CCNA_02068at 2219.724 kb on + strand, within CCNA_02068

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL
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2,217,802 + -1.3
2,217,810 - +0.1
2,217,822 + +0.5
2,217,900 + +0.5
2,217,908 - -0.0
2,217,944 - +0.4
2,217,959 + +0.3
2,217,975 - +0.1
2,217,999 + -0.3
2,218,168 + CCNA_02066 0.21 -1.7
2,218,176 - CCNA_02066 0.22 -0.5
2,218,176 - CCNA_02066 0.22 +0.1
2,218,478 - CCNA_02066 0.65 -0.1
2,218,478 - CCNA_02066 0.65 +0.3
2,218,478 - CCNA_02066 0.65 +0.7
2,218,553 - CCNA_02066 0.75 +0.4
2,218,675 - -1.3
2,218,680 + +0.1
2,218,726 + +0.7
2,218,840 + +1.5
2,218,866 - CCNA_02067 0.10 -1.3
2,218,902 + CCNA_02067 0.16 -1.0
2,218,904 - CCNA_02067 0.17 +0.8
2,218,904 - CCNA_02067 0.17 +0.4
2,218,973 - CCNA_02067 0.28 +1.1
2,218,997 + CCNA_02067 0.32 -2.3
2,219,010 - CCNA_02067 0.34 +0.3
2,219,018 + CCNA_02067 0.35 -3.5
2,219,018 + CCNA_02067 0.35 +0.2
2,219,049 - CCNA_02067 0.40 -0.2
2,219,073 - CCNA_02067 0.44 -0.2
2,219,075 - CCNA_02067 0.44 +0.6
2,219,126 + CCNA_02067 0.53 -1.3
2,219,153 - CCNA_02067 0.57 -0.1
2,219,249 - CCNA_02067 0.73 +1.2
2,219,368 - +0.4
2,219,528 + +0.9
2,219,554 + CCNA_02068 0.12 +1.8
2,219,562 - CCNA_02068 0.14 -0.1
2,219,588 + CCNA_02068 0.21 +0.3
2,219,627 - CCNA_02068 0.32 +0.7
2,219,654 + CCNA_02068 0.40 -1.0
2,219,659 + CCNA_02068 0.42 -0.9
2,219,659 + CCNA_02068 0.42 -0.6
2,219,724 + CCNA_02068 0.60 +0.4

Or see this region's nucleotide sequence