Experiment: PYE with CHIR-090 10 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01813 and CCNA_01814 overlap by 4 nucleotides CCNA_01814 and CCNA_01815 overlap by 4 nucleotides
CCNA_01813: CCNA_01813 - tRNA-dihydrouridine synthase, at 1,937,704 to 1,938,711
_01813
CCNA_01814: CCNA_01814 - nitrogen regulation protein ntrB, at 1,938,708 to 1,939,829
_01814
CCNA_01815: CCNA_01815 - nitrogen assimilation regulatory protein NtrC, at 1,939,826 to 1,941,247
_01815
Position (kb)
1938
1939
1940 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1937.737 kb on + strand at 1937.748 kb on + strand at 1937.901 kb on + strand, within CCNA_01813 at 1937.902 kb on + strand, within CCNA_01813 at 1937.929 kb on - strand, within CCNA_01813 at 1938.055 kb on + strand, within CCNA_01813 at 1938.055 kb on + strand, within CCNA_01813 at 1938.055 kb on + strand, within CCNA_01813 at 1938.055 kb on + strand, within CCNA_01813 at 1938.055 kb on + strand, within CCNA_01813 at 1938.063 kb on - strand, within CCNA_01813 at 1938.068 kb on + strand, within CCNA_01813 at 1938.068 kb on + strand, within CCNA_01813 at 1938.068 kb on + strand, within CCNA_01813 at 1938.108 kb on - strand, within CCNA_01813 at 1938.110 kb on + strand, within CCNA_01813 at 1938.134 kb on + strand, within CCNA_01813 at 1938.220 kb on + strand, within CCNA_01813 at 1938.220 kb on + strand, within CCNA_01813 at 1938.228 kb on - strand, within CCNA_01813 at 1938.254 kb on - strand, within CCNA_01813 at 1938.299 kb on - strand, within CCNA_01813 at 1938.363 kb on + strand, within CCNA_01813 at 1938.371 kb on - strand, within CCNA_01813 at 1938.429 kb on - strand, within CCNA_01813 at 1938.436 kb on + strand, within CCNA_01813 at 1938.444 kb on - strand, within CCNA_01813 at 1938.444 kb on - strand, within CCNA_01813 at 1938.478 kb on + strand, within CCNA_01813 at 1938.519 kb on + strand, within CCNA_01813 at 1938.546 kb on - strand, within CCNA_01813 at 1938.573 kb on + strand, within CCNA_01813 at 1938.573 kb on + strand, within CCNA_01813 at 1938.614 kb on + strand at 1938.614 kb on + strand at 1938.646 kb on - strand at 1938.658 kb on + strand at 1938.750 kb on + strand at 1938.789 kb on + strand at 1938.892 kb on - strand, within CCNA_01814 at 1938.907 kb on + strand, within CCNA_01814 at 1938.929 kb on + strand, within CCNA_01814 at 1939.782 kb on + strand at 1939.807 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL remove 1,937,737 + -0.0 1,937,748 + +0.2 1,937,901 + CCNA_01813 0.20 +0.5 1,937,902 + CCNA_01813 0.20 +0.0 1,937,929 - CCNA_01813 0.22 -3.7 1,938,055 + CCNA_01813 0.35 -0.2 1,938,055 + CCNA_01813 0.35 +0.4 1,938,055 + CCNA_01813 0.35 +0.4 1,938,055 + CCNA_01813 0.35 +0.3 1,938,055 + CCNA_01813 0.35 +0.4 1,938,063 - CCNA_01813 0.36 -1.5 1,938,068 + CCNA_01813 0.36 +0.4 1,938,068 + CCNA_01813 0.36 +0.4 1,938,068 + CCNA_01813 0.36 +0.9 1,938,108 - CCNA_01813 0.40 +2.8 1,938,110 + CCNA_01813 0.40 +0.5 1,938,134 + CCNA_01813 0.43 +0.2 1,938,220 + CCNA_01813 0.51 +1.2 1,938,220 + CCNA_01813 0.51 +0.2 1,938,228 - CCNA_01813 0.52 +0.1 1,938,254 - CCNA_01813 0.55 -1.9 1,938,299 - CCNA_01813 0.59 -0.2 1,938,363 + CCNA_01813 0.65 +0.4 1,938,371 - CCNA_01813 0.66 -2.1 1,938,429 - CCNA_01813 0.72 -0.7 1,938,436 + CCNA_01813 0.73 +1.7 1,938,444 - CCNA_01813 0.73 -2.1 1,938,444 - CCNA_01813 0.73 -1.8 1,938,478 + CCNA_01813 0.77 +0.8 1,938,519 + CCNA_01813 0.81 +1.3 1,938,546 - CCNA_01813 0.84 +1.2 1,938,573 + CCNA_01813 0.86 +0.5 1,938,573 + CCNA_01813 0.86 -0.2 1,938,614 + +0.2 1,938,614 + +0.7 1,938,646 - -0.4 1,938,658 + -1.2 1,938,750 + +0.5 1,938,789 + -0.2 1,938,892 - CCNA_01814 0.16 -0.5 1,938,907 + CCNA_01814 0.18 +0.8 1,938,929 + CCNA_01814 0.20 +0.8 1,939,782 + +0.3 1,939,807 + +0.4
Or see this region's nucleotide sequence