Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_01814

Experiment: PYE with CHIR-090 10 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01813 and CCNA_01814 overlap by 4 nucleotidesCCNA_01814 and CCNA_01815 overlap by 4 nucleotides CCNA_01813: CCNA_01813 - tRNA-dihydrouridine synthase, at 1,937,704 to 1,938,711 _01813 CCNA_01814: CCNA_01814 - nitrogen regulation protein ntrB, at 1,938,708 to 1,939,829 _01814 CCNA_01815: CCNA_01815 - nitrogen assimilation regulatory protein NtrC, at 1,939,826 to 1,941,247 _01815 Position (kb) 1938 1939 1940Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1937.737 kb on + strandat 1937.748 kb on + strandat 1937.901 kb on + strand, within CCNA_01813at 1937.902 kb on + strand, within CCNA_01813at 1937.929 kb on - strand, within CCNA_01813at 1938.055 kb on + strand, within CCNA_01813at 1938.055 kb on + strand, within CCNA_01813at 1938.055 kb on + strand, within CCNA_01813at 1938.055 kb on + strand, within CCNA_01813at 1938.055 kb on + strand, within CCNA_01813at 1938.063 kb on - strand, within CCNA_01813at 1938.068 kb on + strand, within CCNA_01813at 1938.068 kb on + strand, within CCNA_01813at 1938.068 kb on + strand, within CCNA_01813at 1938.108 kb on - strand, within CCNA_01813at 1938.110 kb on + strand, within CCNA_01813at 1938.134 kb on + strand, within CCNA_01813at 1938.220 kb on + strand, within CCNA_01813at 1938.220 kb on + strand, within CCNA_01813at 1938.228 kb on - strand, within CCNA_01813at 1938.254 kb on - strand, within CCNA_01813at 1938.299 kb on - strand, within CCNA_01813at 1938.363 kb on + strand, within CCNA_01813at 1938.371 kb on - strand, within CCNA_01813at 1938.429 kb on - strand, within CCNA_01813at 1938.436 kb on + strand, within CCNA_01813at 1938.444 kb on - strand, within CCNA_01813at 1938.444 kb on - strand, within CCNA_01813at 1938.478 kb on + strand, within CCNA_01813at 1938.519 kb on + strand, within CCNA_01813at 1938.546 kb on - strand, within CCNA_01813at 1938.573 kb on + strand, within CCNA_01813at 1938.573 kb on + strand, within CCNA_01813at 1938.614 kb on + strandat 1938.614 kb on + strandat 1938.646 kb on - strandat 1938.658 kb on + strandat 1938.750 kb on + strandat 1938.789 kb on + strandat 1938.892 kb on - strand, within CCNA_01814at 1938.907 kb on + strand, within CCNA_01814at 1938.929 kb on + strand, within CCNA_01814at 1939.782 kb on + strandat 1939.807 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL
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1,937,737 + -0.0
1,937,748 + +0.2
1,937,901 + CCNA_01813 0.20 +0.5
1,937,902 + CCNA_01813 0.20 +0.0
1,937,929 - CCNA_01813 0.22 -3.7
1,938,055 + CCNA_01813 0.35 -0.2
1,938,055 + CCNA_01813 0.35 +0.4
1,938,055 + CCNA_01813 0.35 +0.4
1,938,055 + CCNA_01813 0.35 +0.3
1,938,055 + CCNA_01813 0.35 +0.4
1,938,063 - CCNA_01813 0.36 -1.5
1,938,068 + CCNA_01813 0.36 +0.4
1,938,068 + CCNA_01813 0.36 +0.4
1,938,068 + CCNA_01813 0.36 +0.9
1,938,108 - CCNA_01813 0.40 +2.8
1,938,110 + CCNA_01813 0.40 +0.5
1,938,134 + CCNA_01813 0.43 +0.2
1,938,220 + CCNA_01813 0.51 +1.2
1,938,220 + CCNA_01813 0.51 +0.2
1,938,228 - CCNA_01813 0.52 +0.1
1,938,254 - CCNA_01813 0.55 -1.9
1,938,299 - CCNA_01813 0.59 -0.2
1,938,363 + CCNA_01813 0.65 +0.4
1,938,371 - CCNA_01813 0.66 -2.1
1,938,429 - CCNA_01813 0.72 -0.7
1,938,436 + CCNA_01813 0.73 +1.7
1,938,444 - CCNA_01813 0.73 -2.1
1,938,444 - CCNA_01813 0.73 -1.8
1,938,478 + CCNA_01813 0.77 +0.8
1,938,519 + CCNA_01813 0.81 +1.3
1,938,546 - CCNA_01813 0.84 +1.2
1,938,573 + CCNA_01813 0.86 +0.5
1,938,573 + CCNA_01813 0.86 -0.2
1,938,614 + +0.2
1,938,614 + +0.7
1,938,646 - -0.4
1,938,658 + -1.2
1,938,750 + +0.5
1,938,789 + -0.2
1,938,892 - CCNA_01814 0.16 -0.5
1,938,907 + CCNA_01814 0.18 +0.8
1,938,929 + CCNA_01814 0.20 +0.8
1,939,782 + +0.3
1,939,807 + +0.4

Or see this region's nucleotide sequence