Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_01812

Experiment: PYE with CHIR-090 10 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01809 and CCNA_01810 are separated by 3 nucleotidesCCNA_01810 and CCNA_01811 overlap by 4 nucleotidesCCNA_01811 and CCNA_01812 are separated by 38 nucleotidesCCNA_01812 and CCNA_01813 are separated by 99 nucleotides CCNA_01809: CCNA_01809 - lipoic acid synthetase, at 1,934,502 to 1,935,479 _01809 CCNA_01810: CCNA_01810 - coenzyme Q-binding protein, at 1,935,483 to 1,935,929 _01810 CCNA_01811: CCNA_01811 - competence/damage-inducible protein CinA, at 1,935,926 to 1,936,417 _01811 CCNA_01812: CCNA_01812 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, at 1,936,456 to 1,937,604 _01812 CCNA_01813: CCNA_01813 - tRNA-dihydrouridine synthase, at 1,937,704 to 1,938,711 _01813 Position (kb) 1936 1937 1938Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1935.473 kb on + strandat 1935.480 kb on + strandat 1935.488 kb on - strandat 1936.070 kb on - strand, within CCNA_01811at 1936.123 kb on + strand, within CCNA_01811at 1936.131 kb on + strand, within CCNA_01811at 1936.138 kb on - strand, within CCNA_01811at 1936.197 kb on - strand, within CCNA_01811at 1936.228 kb on - strand, within CCNA_01811at 1936.339 kb on - strand, within CCNA_01811at 1936.445 kb on + strandat 1936.936 kb on - strand, within CCNA_01812at 1937.599 kb on + strandat 1937.652 kb on + strandat 1937.737 kb on + strandat 1937.748 kb on + strandat 1937.901 kb on + strand, within CCNA_01813at 1937.902 kb on + strand, within CCNA_01813at 1937.929 kb on - strand, within CCNA_01813at 1938.055 kb on + strand, within CCNA_01813at 1938.055 kb on + strand, within CCNA_01813at 1938.055 kb on + strand, within CCNA_01813at 1938.055 kb on + strand, within CCNA_01813at 1938.055 kb on + strand, within CCNA_01813at 1938.063 kb on - strand, within CCNA_01813at 1938.068 kb on + strand, within CCNA_01813at 1938.068 kb on + strand, within CCNA_01813at 1938.068 kb on + strand, within CCNA_01813at 1938.108 kb on - strand, within CCNA_01813at 1938.110 kb on + strand, within CCNA_01813at 1938.134 kb on + strand, within CCNA_01813at 1938.220 kb on + strand, within CCNA_01813at 1938.220 kb on + strand, within CCNA_01813at 1938.228 kb on - strand, within CCNA_01813at 1938.254 kb on - strand, within CCNA_01813at 1938.299 kb on - strand, within CCNA_01813at 1938.363 kb on + strand, within CCNA_01813at 1938.371 kb on - strand, within CCNA_01813at 1938.429 kb on - strand, within CCNA_01813at 1938.436 kb on + strand, within CCNA_01813at 1938.444 kb on - strand, within CCNA_01813at 1938.444 kb on - strand, within CCNA_01813at 1938.478 kb on + strand, within CCNA_01813at 1938.519 kb on + strand, within CCNA_01813at 1938.546 kb on - strand, within CCNA_01813at 1938.573 kb on + strand, within CCNA_01813at 1938.573 kb on + strand, within CCNA_01813

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL
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1,935,473 + +0.9
1,935,480 + +0.2
1,935,488 - +0.4
1,936,070 - CCNA_01811 0.29 +0.6
1,936,123 + CCNA_01811 0.40 -0.3
1,936,131 + CCNA_01811 0.42 +0.2
1,936,138 - CCNA_01811 0.43 -0.6
1,936,197 - CCNA_01811 0.55 -0.1
1,936,228 - CCNA_01811 0.61 +0.4
1,936,339 - CCNA_01811 0.84 +0.7
1,936,445 + +0.6
1,936,936 - CCNA_01812 0.42 +0.2
1,937,599 + -1.9
1,937,652 + -0.0
1,937,737 + -0.0
1,937,748 + +0.2
1,937,901 + CCNA_01813 0.20 +0.5
1,937,902 + CCNA_01813 0.20 +0.0
1,937,929 - CCNA_01813 0.22 -3.7
1,938,055 + CCNA_01813 0.35 -0.2
1,938,055 + CCNA_01813 0.35 +0.4
1,938,055 + CCNA_01813 0.35 +0.4
1,938,055 + CCNA_01813 0.35 +0.3
1,938,055 + CCNA_01813 0.35 +0.4
1,938,063 - CCNA_01813 0.36 -1.5
1,938,068 + CCNA_01813 0.36 +0.4
1,938,068 + CCNA_01813 0.36 +0.4
1,938,068 + CCNA_01813 0.36 +0.9
1,938,108 - CCNA_01813 0.40 +2.8
1,938,110 + CCNA_01813 0.40 +0.5
1,938,134 + CCNA_01813 0.43 +0.2
1,938,220 + CCNA_01813 0.51 +1.2
1,938,220 + CCNA_01813 0.51 +0.2
1,938,228 - CCNA_01813 0.52 +0.1
1,938,254 - CCNA_01813 0.55 -1.9
1,938,299 - CCNA_01813 0.59 -0.2
1,938,363 + CCNA_01813 0.65 +0.4
1,938,371 - CCNA_01813 0.66 -2.1
1,938,429 - CCNA_01813 0.72 -0.7
1,938,436 + CCNA_01813 0.73 +1.7
1,938,444 - CCNA_01813 0.73 -2.1
1,938,444 - CCNA_01813 0.73 -1.8
1,938,478 + CCNA_01813 0.77 +0.8
1,938,519 + CCNA_01813 0.81 +1.3
1,938,546 - CCNA_01813 0.84 +1.2
1,938,573 + CCNA_01813 0.86 +0.5
1,938,573 + CCNA_01813 0.86 -0.2

Or see this region's nucleotide sequence