Experiment: PYE with CHIR-090 10 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01692 and CCNA_01693 are separated by 127 nucleotides CCNA_01693 and CCNA_01694 are separated by 13 nucleotides
CCNA_01692: CCNA_01692 - GMP synthase GuaA, at 1,819,124 to 1,820,686
_01692
CCNA_01693: CCNA_01693 - LysR-family transcriptional regulator, at 1,820,814 to 1,821,710
_01693
CCNA_01694: CCNA_01694 - CocE/NonD family hydrolase, at 1,821,724 to 1,823,658
_01694
Position (kb)
1820
1821
1822 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1819.868 kb on + strand, within CCNA_01692 at 1819.948 kb on + strand, within CCNA_01692 at 1819.948 kb on + strand, within CCNA_01692 at 1820.121 kb on + strand, within CCNA_01692 at 1820.245 kb on + strand, within CCNA_01692 at 1820.410 kb on + strand, within CCNA_01692 at 1820.736 kb on - strand at 1820.803 kb on + strand at 1820.903 kb on - strand at 1820.972 kb on - strand, within CCNA_01693 at 1821.159 kb on + strand, within CCNA_01693 at 1821.283 kb on + strand, within CCNA_01693 at 1821.283 kb on + strand, within CCNA_01693 at 1821.291 kb on - strand, within CCNA_01693 at 1821.304 kb on + strand, within CCNA_01693 at 1821.319 kb on + strand, within CCNA_01693 at 1821.322 kb on - strand, within CCNA_01693 at 1821.389 kb on - strand, within CCNA_01693 at 1821.398 kb on + strand, within CCNA_01693 at 1821.421 kb on + strand, within CCNA_01693 at 1821.429 kb on - strand, within CCNA_01693 at 1821.436 kb on + strand, within CCNA_01693 at 1821.436 kb on + strand, within CCNA_01693 at 1821.501 kb on + strand, within CCNA_01693 at 1821.514 kb on - strand, within CCNA_01693 at 1821.543 kb on - strand, within CCNA_01693 at 1821.543 kb on - strand, within CCNA_01693 at 1821.556 kb on + strand, within CCNA_01693 at 1821.556 kb on + strand, within CCNA_01693 at 1821.564 kb on - strand, within CCNA_01693 at 1821.564 kb on - strand, within CCNA_01693 at 1821.566 kb on + strand, within CCNA_01693 at 1821.574 kb on - strand, within CCNA_01693 at 1821.616 kb on + strand, within CCNA_01693 at 1821.621 kb on + strand at 1821.621 kb on + strand at 1821.629 kb on - strand at 1821.629 kb on - strand at 1821.629 kb on - strand at 1821.665 kb on + strand at 1821.666 kb on - strand at 1821.682 kb on + strand at 1821.682 kb on - strand at 1821.683 kb on + strand at 1821.704 kb on + strand at 1821.816 kb on - strand at 1821.825 kb on + strand at 1821.893 kb on + strand at 1821.941 kb on - strand, within CCNA_01694 at 1822.026 kb on - strand, within CCNA_01694 at 1822.026 kb on - strand, within CCNA_01694 at 1822.026 kb on - strand, within CCNA_01694 at 1822.071 kb on + strand, within CCNA_01694 at 1822.089 kb on + strand, within CCNA_01694 at 1822.098 kb on + strand, within CCNA_01694 at 1822.098 kb on + strand, within CCNA_01694 at 1822.205 kb on + strand, within CCNA_01694 at 1822.222 kb on + strand, within CCNA_01694 at 1822.237 kb on - strand, within CCNA_01694 at 1822.238 kb on + strand, within CCNA_01694 at 1822.238 kb on + strand, within CCNA_01694 at 1822.248 kb on + strand, within CCNA_01694 at 1822.248 kb on + strand, within CCNA_01694 at 1822.256 kb on + strand, within CCNA_01694 at 1822.256 kb on - strand, within CCNA_01694 at 1822.256 kb on - strand, within CCNA_01694 at 1822.256 kb on - strand, within CCNA_01694 at 1822.256 kb on - strand, within CCNA_01694 at 1822.256 kb on - strand, within CCNA_01694 at 1822.264 kb on - strand, within CCNA_01694 at 1822.308 kb on + strand, within CCNA_01694 at 1822.311 kb on - strand, within CCNA_01694 at 1822.315 kb on + strand, within CCNA_01694 at 1822.316 kb on - strand, within CCNA_01694 at 1822.378 kb on - strand, within CCNA_01694 at 1822.378 kb on - strand, within CCNA_01694 at 1822.488 kb on + strand, within CCNA_01694 at 1822.548 kb on + strand, within CCNA_01694 at 1822.553 kb on + strand, within CCNA_01694 at 1822.553 kb on + strand, within CCNA_01694 at 1822.553 kb on + strand, within CCNA_01694 at 1822.553 kb on + strand, within CCNA_01694 at 1822.561 kb on - strand, within CCNA_01694 at 1822.561 kb on - strand, within CCNA_01694 at 1822.561 kb on - strand, within CCNA_01694 at 1822.592 kb on + strand, within CCNA_01694 at 1822.600 kb on - strand, within CCNA_01694 at 1822.600 kb on - strand, within CCNA_01694 at 1822.618 kb on - strand, within CCNA_01694 at 1822.626 kb on + strand, within CCNA_01694 at 1822.664 kb on - strand, within CCNA_01694 at 1822.687 kb on - strand, within CCNA_01694
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL remove 1,819,868 + CCNA_01692 0.48 -0.9 1,819,948 + CCNA_01692 0.53 +0.4 1,819,948 + CCNA_01692 0.53 -0.2 1,820,121 + CCNA_01692 0.64 -0.9 1,820,245 + CCNA_01692 0.72 +1.8 1,820,410 + CCNA_01692 0.82 +1.2 1,820,736 - +0.0 1,820,803 + +0.8 1,820,903 - +0.2 1,820,972 - CCNA_01693 0.18 -2.5 1,821,159 + CCNA_01693 0.38 +0.5 1,821,283 + CCNA_01693 0.52 -1.3 1,821,283 + CCNA_01693 0.52 -2.2 1,821,291 - CCNA_01693 0.53 -1.2 1,821,304 + CCNA_01693 0.55 -0.8 1,821,319 + CCNA_01693 0.56 +0.9 1,821,322 - CCNA_01693 0.57 -1.0 1,821,389 - CCNA_01693 0.64 -0.6 1,821,398 + CCNA_01693 0.65 -0.5 1,821,421 + CCNA_01693 0.68 -0.7 1,821,429 - CCNA_01693 0.69 -0.1 1,821,436 + CCNA_01693 0.69 +1.1 1,821,436 + CCNA_01693 0.69 -2.0 1,821,501 + CCNA_01693 0.77 -1.4 1,821,514 - CCNA_01693 0.78 -0.6 1,821,543 - CCNA_01693 0.81 -2.0 1,821,543 - CCNA_01693 0.81 -0.9 1,821,556 + CCNA_01693 0.83 +0.1 1,821,556 + CCNA_01693 0.83 -1.3 1,821,564 - CCNA_01693 0.84 -1.1 1,821,564 - CCNA_01693 0.84 +1.0 1,821,566 + CCNA_01693 0.84 +0.2 1,821,574 - CCNA_01693 0.85 -0.0 1,821,616 + CCNA_01693 0.89 -1.2 1,821,621 + +0.7 1,821,621 + -0.2 1,821,629 - -0.6 1,821,629 - +0.0 1,821,629 - -0.3 1,821,665 + -0.7 1,821,666 - -0.4 1,821,682 + -0.8 1,821,682 - +0.2 1,821,683 + +0.9 1,821,704 + +0.4 1,821,816 - +0.5 1,821,825 + +3.3 1,821,893 + -0.3 1,821,941 - CCNA_01694 0.11 +0.6 1,822,026 - CCNA_01694 0.16 -0.6 1,822,026 - CCNA_01694 0.16 -0.1 1,822,026 - CCNA_01694 0.16 +0.2 1,822,071 + CCNA_01694 0.18 -0.6 1,822,089 + CCNA_01694 0.19 +0.5 1,822,098 + CCNA_01694 0.19 +0.1 1,822,098 + CCNA_01694 0.19 +0.2 1,822,205 + CCNA_01694 0.25 -0.2 1,822,222 + CCNA_01694 0.26 -0.5 1,822,237 - CCNA_01694 0.27 -1.4 1,822,238 + CCNA_01694 0.27 +0.2 1,822,238 + CCNA_01694 0.27 -0.0 1,822,248 + CCNA_01694 0.27 +0.4 1,822,248 + CCNA_01694 0.27 -0.4 1,822,256 + CCNA_01694 0.27 -0.2 1,822,256 - CCNA_01694 0.27 -0.8 1,822,256 - CCNA_01694 0.27 +0.9 1,822,256 - CCNA_01694 0.27 -0.6 1,822,256 - CCNA_01694 0.27 -0.2 1,822,256 - CCNA_01694 0.27 -2.3 1,822,264 - CCNA_01694 0.28 -0.5 1,822,308 + CCNA_01694 0.30 +0.8 1,822,311 - CCNA_01694 0.30 -0.4 1,822,315 + CCNA_01694 0.31 -0.6 1,822,316 - CCNA_01694 0.31 -0.1 1,822,378 - CCNA_01694 0.34 -0.6 1,822,378 - CCNA_01694 0.34 -0.2 1,822,488 + CCNA_01694 0.39 +0.3 1,822,548 + CCNA_01694 0.43 +1.2 1,822,553 + CCNA_01694 0.43 -0.5 1,822,553 + CCNA_01694 0.43 +1.3 1,822,553 + CCNA_01694 0.43 -1.3 1,822,553 + CCNA_01694 0.43 -0.5 1,822,561 - CCNA_01694 0.43 +1.1 1,822,561 - CCNA_01694 0.43 +0.8 1,822,561 - CCNA_01694 0.43 +0.2 1,822,592 + CCNA_01694 0.45 -2.0 1,822,600 - CCNA_01694 0.45 +0.1 1,822,600 - CCNA_01694 0.45 -0.1 1,822,618 - CCNA_01694 0.46 -0.3 1,822,626 + CCNA_01694 0.47 -2.3 1,822,664 - CCNA_01694 0.49 +0.3 1,822,687 - CCNA_01694 0.50 -0.0
Or see this region's nucleotide sequence