Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_01515

Experiment: PYE with CHIR-090 10 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with CHIR-090 10 ug/mL
1,623,321	-		CCNA_01513	0.49	-0.3
1,623,339	+		CCNA_01513	0.50	-0.6
1,623,339	+		CCNA_01513	0.50	-0.1
1,623,339	+		CCNA_01513	0.50	-0.8
1,623,347	-		CCNA_01513	0.51	+0.5
1,623,347	-		CCNA_01513	0.51	+1.4
1,623,359	+		CCNA_01513	0.52	-0.2
1,623,360	+		CCNA_01513	0.53	+0.2
1,623,370	+		CCNA_01513	0.54	+0.3
1,623,437	+		CCNA_01513	0.60	+0.2
1,623,450	-		CCNA_01513	0.62	-1.3
1,623,464	+		CCNA_01513	0.63	-0.4
1,623,464	+		CCNA_01513	0.63	+0.3
1,623,472	-		CCNA_01513	0.64	+0.4
1,623,480	-		CCNA_01513	0.65	+0.4
1,623,485	+		CCNA_01513	0.65	+0.0
1,623,493	-		CCNA_01513	0.66	-2.0
1,623,515	+		CCNA_01513	0.68	+0.0
1,623,515	+		CCNA_01513	0.68	-0.3
1,623,517	+		CCNA_01513	0.68	+0.4
1,623,517	+		CCNA_01513	0.68	-0.0
1,623,523	-		CCNA_01513	0.69	-0.6
1,623,546	+		CCNA_01513	0.71	+0.8
1,623,546	+		CCNA_01513	0.71	+0.1
1,623,569	+		CCNA_01513	0.74	-0.6
1,623,569	+		CCNA_01513	0.74	-2.4
1,623,569	+		CCNA_01513	0.74	-1.2
1,623,569	+		CCNA_01513	0.74	-0.5
1,623,577	-		CCNA_01513	0.75	-1.7
1,623,577	-		CCNA_01513	0.75	-2.3
1,623,579	+		CCNA_01513	0.75	-1.2
1,623,582	-		CCNA_01513	0.75	-0.2
1,623,587	-		CCNA_01513	0.76	-1.9
1,623,651	+		CCNA_01513	0.82	-0.2
1,623,699	-		CCNA_01513	0.87	-0.8
1,623,719	+		CCNA_01513	0.89	-1.2
1,623,727	-		CCNA_01513	0.90	-1.8
1,623,727	-		CCNA_01513	0.90	-0.3
1,623,758	+				+0.6
1,623,766	-				-2.8
1,623,808	+				-0.4
1,623,808	+				+0.6
1,623,816	-				-0.8
1,623,821	+				-0.3
1,623,829	-				-0.3
1,623,834	-				+2.1
1,623,871	+				+0.8
1,623,871	+				+0.8
1,623,879	-		CCNA_01514	0.11	-0.2
1,623,879	-		CCNA_01514	0.11	+0.1
1,623,936	-		CCNA_01514	0.23	+0.1
1,623,963	-		CCNA_01514	0.28	+0.2
1,623,963	-		CCNA_01514	0.28	+0.7
1,623,968	-		CCNA_01514	0.29	-1.2
1,623,968	-		CCNA_01514	0.29	-0.2
1,623,974	+		CCNA_01514	0.30	+0.5
1,623,992	-		CCNA_01514	0.34	+0.4
1,623,993	+		CCNA_01514	0.34	+0.6
1,624,011	-		CCNA_01514	0.38	-1.1
1,624,055	-		CCNA_01514	0.46	-2.0
1,624,127	+		CCNA_01514	0.61	-0.3
1,624,135	-		CCNA_01514	0.62	-0.4
1,624,135	-		CCNA_01514	0.62	+0.1
1,624,137	+		CCNA_01514	0.63	-0.3
1,624,145	-		CCNA_01514	0.64	-0.3
1,624,145	-		CCNA_01514	0.64	-0.4
1,624,145	-		CCNA_01514	0.64	-0.2
1,624,173	+		CCNA_01514	0.70	+0.4
1,624,190	+		CCNA_01514	0.73	+0.3
1,624,190	+		CCNA_01514	0.73	+0.8
1,624,196	+		CCNA_01514	0.74	-1.3
1,624,217	-		CCNA_01514	0.79	-0.7
1,624,267	+		CCNA_01514	0.89	+0.6
1,624,273	+		CCNA_01514	0.90	-1.6
1,624,281	-				-0.2
1,624,296	-				+1.5
1,624,312	+				-1.4
1,624,320	-				-0.0
1,624,320	-				-1.3
1,624,353	-				+0.7
1,624,395	-				+0.0
1,624,406	-				+1.9
1,624,446	-		CCNA_01515	0.10	-3.2
1,624,466	-		CCNA_01515	0.12	-0.4
1,624,466	-		CCNA_01515	0.12	-1.9
1,624,484	-		CCNA_01515	0.13	-1.4
1,624,539	+		CCNA_01515	0.18	-0.6
1,624,563	+		CCNA_01515	0.19	+0.4
1,624,602	-		CCNA_01515	0.22	-0.1
1,624,619	+		CCNA_01515	0.24	+0.1
1,624,661	-		CCNA_01515	0.27	-0.8
1,624,671	+		CCNA_01515	0.28	-0.2
1,624,671	+		CCNA_01515	0.28	+0.2
1,624,674	-		CCNA_01515	0.28	+0.4
1,624,679	-		CCNA_01515	0.28	+1.8
1,624,699	-		CCNA_01515	0.30	-1.9
1,624,847	-		CCNA_01515	0.42	-0.4
1,624,881	+		CCNA_01515	0.44	-1.6
1,624,881	+		CCNA_01515	0.44	-0.6
1,624,889	-		CCNA_01515	0.45	-1.4
1,624,889	-		CCNA_01515	0.45	-1.3
1,624,906	-		CCNA_01515	0.46	-0.4
1,624,941	-		CCNA_01515	0.49	+0.6
1,624,950	+		CCNA_01515	0.50	-2.7
1,625,051	+		CCNA_01515	0.58	-0.2
1,625,051	+		CCNA_01515	0.58	-1.1
1,625,052	+		CCNA_01515	0.58	-0.3
1,625,052	+		CCNA_01515	0.58	-1.1
1,625,059	-		CCNA_01515	0.58	-0.6
1,625,059	-		CCNA_01515	0.58	+0.6
1,625,060	-		CCNA_01515	0.58	-1.6
1,625,061	+		CCNA_01515	0.58	-0.1
1,625,104	+		CCNA_01515	0.62	-0.7
1,625,104	-		CCNA_01515	0.62	-1.3
1,625,140	+		CCNA_01515	0.64	-0.9
1,625,198	+		CCNA_01515	0.69	+1.0
1,625,206	+		CCNA_01515	0.70	-0.3
1,625,236	-		CCNA_01515	0.72	-0.5
1,625,254	+		CCNA_01515	0.73	-1.2
1,625,262	+		CCNA_01515	0.74	+0.2
1,625,275	+		CCNA_01515	0.75	-0.5
1,625,448	-		CCNA_01515	0.89	-1.2
1,625,474	+				-2.1
1,625,474	+				+0.1
1,625,482	-				+0.9
1,625,482	-				-1.2
1,625,482	-				-1.8
1,625,482	-				-1.4
1,625,508	-				-1.7
1,625,509	-				-0.5
1,625,522	+				-0.9
1,625,560	+				-2.0
1,625,566	+				+0.1
1,625,573	-				-1.6
1,625,659	-				+1.2
1,625,660	+				+0.2
1,625,660	+				+0.5
1,625,706	+				-0.4
1,625,706	+				-0.4
1,625,719	+				-0.8
1,625,719	+				+0.2
1,625,719	+				-0.2
1,625,719	+				+0.7
1,625,719	+				+0.2
1,625,727	-				-0.4
1,625,727	-				-0.5
1,625,727	-				-0.7
1,625,727	-				+1.8
1,625,727	-				-0.6
1,625,727	-				-1.0
1,625,736	+				+1.4
1,625,744	-				+0.7
1,625,902	+		CCNA_01516	0.19	+1.0
1,625,910	-		CCNA_01516	0.21	+0.5
1,625,917	-		CCNA_01516	0.22	-0.2
1,625,929	-		CCNA_01516	0.24	+0.1
1,625,967	-		CCNA_01516	0.30	-0.0
1,625,984	+		CCNA_01516	0.32	-0.6
1,625,992	-		CCNA_01516	0.33	+0.8
1,626,004	-		CCNA_01516	0.35	-1.1
1,626,004	-		CCNA_01516	0.35	+0.4
1,626,006	+		CCNA_01516	0.36	+0.1
1,626,045	+		CCNA_01516	0.42	+0.4
1,626,120	+		CCNA_01516	0.54	+0.2
1,626,156	+		CCNA_01516	0.59	-1.6
1,626,159	-		CCNA_01516	0.60	+0.1
1,626,164	-		CCNA_01516	0.61	+0.1
1,626,175	-		CCNA_01516	0.62	+0.4
1,626,190	+		CCNA_01516	0.65	-1.7
1,626,210	-		CCNA_01516	0.68	-0.8
1,626,212	-		CCNA_01516	0.68	-0.6
1,626,212	-		CCNA_01516	0.68	-2.2
1,626,231	+		CCNA_01516	0.71	+0.1
1,626,336	+		CCNA_01516	0.88	-1.4
1,626,336	+		CCNA_01516	0.88	+1.0
1,626,336	+		CCNA_01516	0.88	+0.4
1,626,344	-		CCNA_01516	0.89	+0.2
1,626,354	+				-1.0
1,626,417	-				-1.0
1,626,431	-				+0.2
1,626,514	+				-0.7
1,626,519	+				-0.9
1,626,527	-				-0.5
1,626,527	-				+0.9