Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_01222

Experiment: PYE with CHIR-090 10 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with CHIR-090 10 ug/mL
1,347,083	+		CCNA_01220	0.47	-1.5
1,347,093	-		CCNA_01220	0.47	-1.0
1,347,206	-		CCNA_01220	0.57	-2.7
1,347,289	-		CCNA_01220	0.64	-1.8
1,347,291	+		CCNA_01220	0.64	-1.9
1,347,294	-		CCNA_01220	0.64	-2.8
1,347,299	-		CCNA_01220	0.64	-2.7
1,347,299	-		CCNA_01220	0.64	-5.1
1,347,299	-		CCNA_01220	0.64	-0.3
1,347,299	-		CCNA_01220	0.64	-2.2
1,347,299	-		CCNA_01220	0.64	-1.5
1,347,320	-		CCNA_01220	0.66	-2.7
1,347,403	+		CCNA_01220	0.73	-0.9
1,347,511	-		CCNA_01220	0.82	-2.3
1,347,526	+		CCNA_01220	0.83	+0.1
1,347,534	-		CCNA_01220	0.84	-3.0
1,347,545	-		CCNA_01220	0.85	-2.6
1,347,561	+		CCNA_01220	0.86	-3.4
1,347,564	-		CCNA_01220	0.86	-1.5
1,347,569	-		CCNA_01220	0.87	-3.0
1,347,620	-				-2.4
1,347,648	-				-3.8
1,347,653	+				-1.1
1,347,661	-				-3.0
1,347,661	-				-3.4
1,347,661	-				-2.7
1,347,670	-				-3.2
1,347,685	+				-1.9
1,347,685	+				-2.0
1,347,685	+				-1.8
1,347,693	-				-2.5
1,347,693	-				-0.9
1,347,693	-				-2.1
1,347,714	-				-2.5
1,347,714	-				-0.5
1,347,754	+				-1.5
1,347,762	-		CCNA_01221	0.10	-1.4
1,347,792	-		CCNA_01221	0.22	-3.1
1,347,909	+		CCNA_01221	0.67	-2.6
1,347,914	+		CCNA_01221	0.69	-1.4
1,347,924	+		CCNA_01221	0.72	-2.1
1,347,924	+		CCNA_01221	0.72	-2.2
1,347,941	+		CCNA_01221	0.79	-2.7
1,347,993	-				+0.1
1,348,098	+				-3.1
1,348,107	+				-1.3
1,348,108	-				-2.5
1,348,115	+				-2.6
1,348,115	-				-2.6
1,348,137	+				-1.8
1,348,191	-		CCNA_01222	0.13	-3.1
1,348,193	+		CCNA_01222	0.14	-4.7
1,348,193	+		CCNA_01222	0.14	-1.5
1,348,204	+		CCNA_01222	0.15	-2.4
1,348,246	-		CCNA_01222	0.19	-1.7
1,348,310	-		CCNA_01222	0.26	-2.3
1,348,325	+		CCNA_01222	0.27	-5.0
1,348,325	+		CCNA_01222	0.27	-2.1
1,348,330	+		CCNA_01222	0.28	-1.7
1,348,459	+		CCNA_01222	0.42	-0.2
1,348,459	+		CCNA_01222	0.42	-0.9
1,348,459	+		CCNA_01222	0.42	-2.6
1,348,467	-		CCNA_01222	0.42	-4.0
1,348,467	-		CCNA_01222	0.42	-3.2
1,348,470	+		CCNA_01222	0.43	-2.0
1,348,484	-		CCNA_01222	0.44	-1.0
1,348,517	+		CCNA_01222	0.48	-3.4
1,348,525	-		CCNA_01222	0.48	-0.0
1,348,527	+		CCNA_01222	0.49	-1.6
1,348,535	-		CCNA_01222	0.49	-2.7
1,348,576	-		CCNA_01222	0.54	-4.0
1,348,746	+		CCNA_01222	0.72	-0.5
1,348,747	+		CCNA_01222	0.72	-3.2
1,348,755	-		CCNA_01222	0.73	-2.5
1,348,763	+		CCNA_01222	0.73	-0.9
1,348,792	+		CCNA_01222	0.76	-2.4
1,348,800	-		CCNA_01222	0.77	-2.4
1,348,808	+		CCNA_01222	0.78	-2.8
1,348,808	+		CCNA_01222	0.78	-2.5
1,348,822	+		CCNA_01222	0.80	-2.4
1,348,822	+		CCNA_01222	0.80	-1.9
1,348,825	-		CCNA_01222	0.80	-3.1
1,348,889	-		CCNA_01222	0.87	-2.9
1,348,894	-		CCNA_01222	0.87	-1.3
1,348,894	-		CCNA_01222	0.87	-2.9
1,348,931	+				-3.4
1,348,939	-				-1.6
1,348,939	-				-3.8
1,348,939	-				-1.9
1,349,019	+				-2.8
1,349,052	+				-0.9
1,349,073	+				-4.2
1,349,080	-				-3.0
1,349,081	-				-2.7
1,349,083	+				-2.1
1,349,091	-				-3.6
1,349,100	+				-0.2
1,349,109	-				-2.5
1,349,140	-				-2.6
1,349,143	-				-2.1
1,349,164	-				-2.5
1,349,164	-				-1.8
1,349,164	-				-3.7
1,349,174	-				-2.7
1,349,192	+		CCNA_01223	0.11	-2.9
1,349,192	+		CCNA_01223	0.11	-1.5
1,349,256	+		CCNA_01223	0.15	-1.8
1,349,342	-		CCNA_01223	0.20	-3.3
1,349,536	+		CCNA_01223	0.31	-2.5
1,349,546	-		CCNA_01223	0.31	-1.2
1,349,557	+		CCNA_01223	0.32	-3.1
1,349,565	-		CCNA_01223	0.33	-3.2
1,349,591	+		CCNA_01223	0.34	-3.8
1,349,605	-		CCNA_01223	0.35	-2.5
1,349,667	+		CCNA_01223	0.38	-1.6
1,349,667	+		CCNA_01223	0.38	-2.8
1,349,667	+		CCNA_01223	0.38	-2.5
1,349,667	+		CCNA_01223	0.38	-2.3
1,349,667	+		CCNA_01223	0.38	-3.3
1,349,667	+		CCNA_01223	0.38	-3.2
1,349,667	+		CCNA_01223	0.38	-1.2
1,349,673	-		CCNA_01223	0.39	-0.7
1,349,675	-		CCNA_01223	0.39	-3.7
1,349,675	-		CCNA_01223	0.39	-2.5
1,349,675	-		CCNA_01223	0.39	-1.9
1,349,675	-		CCNA_01223	0.39	-2.7
1,349,692	+		CCNA_01223	0.40	-1.7
1,349,698	+		CCNA_01223	0.40	-2.5
1,349,700	-		CCNA_01223	0.40	-2.9
1,349,700	-		CCNA_01223	0.40	-1.4
1,349,702	+		CCNA_01223	0.40	-1.4
1,349,762	+		CCNA_01223	0.44	+0.2
1,349,789	+		CCNA_01223	0.46	-3.8
1,349,807	+		CCNA_01223	0.47	-2.6
1,349,807	+		CCNA_01223	0.47	-4.1
1,349,807	+		CCNA_01223	0.47	-2.7
1,349,812	+		CCNA_01223	0.47	-4.2
1,349,818	+		CCNA_01223	0.47	-2.6
1,349,820	-		CCNA_01223	0.47	-2.9
1,349,820	-		CCNA_01223	0.47	-4.2
1,349,843	-		CCNA_01223	0.49	-1.7
1,349,902	-		CCNA_01223	0.52	-1.4
1,349,916	+		CCNA_01223	0.53	-2.9
1,349,943	-		CCNA_01223	0.55	-2.5
1,349,981	-		CCNA_01223	0.57	-3.2
1,349,991	-		CCNA_01223	0.57	-2.3