Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00908

Experiment: PYE with CHIR-090 10 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00906 and CCNA_00907 overlap by 4 nucleotidesCCNA_00907 and CCNA_00908 overlap by 64 nucleotidesCCNA_00908 and CCNA_00909 are separated by 84 nucleotidesCCNA_00909 and CCNA_00910 are separated by 72 nucleotides CCNA_00906: CCNA_00906 - hypothetical protein, at 986,466 to 987,380 _00906 CCNA_00907: CCNA_00907 - hypothetical protein, at 987,377 to 988,105 _00907 CCNA_00908: CCNA_00908 - 3-oxoacyl-(acyl-carrier-protein) synthase III, at 988,042 to 989,181 _00908 CCNA_00909: CCNA_00909 - hypothetical protein, at 989,266 to 990,003 _00909 CCNA_00910: CCNA_00910 - erythromycin esterase family protein, at 990,076 to 991,266 _00910 Position (kb) 988 989 990Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 987.047 kb on - strand, within CCNA_00906at 987.074 kb on + strand, within CCNA_00906at 987.075 kb on + strand, within CCNA_00906at 987.082 kb on - strand, within CCNA_00906at 987.087 kb on + strand, within CCNA_00906at 987.087 kb on + strand, within CCNA_00906at 987.118 kb on + strand, within CCNA_00906at 987.130 kb on - strand, within CCNA_00906at 987.135 kb on - strand, within CCNA_00906at 987.135 kb on - strand, within CCNA_00906at 987.135 kb on - strand, within CCNA_00906at 987.142 kb on + strand, within CCNA_00906at 987.149 kb on + strand, within CCNA_00906at 987.152 kb on - strand, within CCNA_00906at 987.152 kb on - strand, within CCNA_00906at 987.164 kb on + strand, within CCNA_00906at 987.231 kb on - strand, within CCNA_00906at 987.231 kb on - strand, within CCNA_00906at 987.231 kb on - strand, within CCNA_00906at 987.259 kb on + strand, within CCNA_00906at 987.259 kb on + strand, within CCNA_00906at 987.261 kb on - strand, within CCNA_00906at 987.267 kb on - strand, within CCNA_00906at 987.267 kb on - strand, within CCNA_00906at 987.267 kb on - strand, within CCNA_00906at 987.267 kb on - strand, within CCNA_00906at 987.269 kb on + strand, within CCNA_00906at 987.269 kb on - strand, within CCNA_00906at 987.275 kb on + strand, within CCNA_00906at 987.282 kb on - strand, within CCNA_00906at 987.305 kb on + strandat 987.305 kb on + strandat 987.311 kb on + strandat 987.339 kb on + strandat 987.405 kb on + strandat 987.405 kb on + strandat 987.405 kb on + strandat 987.413 kb on - strandat 987.413 kb on - strandat 987.464 kb on + strand, within CCNA_00907at 987.464 kb on + strand, within CCNA_00907at 987.494 kb on - strand, within CCNA_00907at 987.513 kb on - strand, within CCNA_00907at 987.524 kb on + strand, within CCNA_00907at 987.535 kb on - strand, within CCNA_00907at 987.535 kb on - strand, within CCNA_00907at 987.540 kb on - strand, within CCNA_00907at 987.544 kb on + strand, within CCNA_00907at 987.549 kb on + strand, within CCNA_00907at 987.559 kb on + strand, within CCNA_00907at 987.572 kb on - strand, within CCNA_00907at 987.641 kb on - strand, within CCNA_00907at 987.652 kb on + strand, within CCNA_00907at 987.669 kb on + strand, within CCNA_00907at 987.677 kb on + strand, within CCNA_00907at 987.806 kb on + strand, within CCNA_00907at 987.814 kb on - strand, within CCNA_00907at 987.823 kb on + strand, within CCNA_00907at 987.823 kb on + strand, within CCNA_00907at 987.823 kb on + strand, within CCNA_00907at 987.830 kb on - strand, within CCNA_00907at 987.831 kb on - strand, within CCNA_00907at 987.879 kb on + strand, within CCNA_00907at 987.879 kb on + strand, within CCNA_00907at 987.879 kb on + strand, within CCNA_00907at 987.886 kb on - strand, within CCNA_00907at 987.886 kb on - strand, within CCNA_00907at 987.887 kb on - strand, within CCNA_00907at 987.900 kb on - strand, within CCNA_00907at 987.956 kb on + strand, within CCNA_00907at 987.956 kb on + strand, within CCNA_00907at 987.956 kb on + strand, within CCNA_00907at 987.964 kb on - strand, within CCNA_00907at 987.970 kb on + strand, within CCNA_00907at 988.001 kb on - strand, within CCNA_00907at 988.005 kb on - strand, within CCNA_00907at 988.021 kb on - strand, within CCNA_00907at 988.052 kb on + strandat 988.052 kb on + strandat 988.052 kb on + strandat 988.052 kb on + strandat 988.052 kb on + strandat 988.052 kb on + strandat 988.052 kb on + strandat 988.060 kb on - strandat 988.060 kb on - strandat 988.062 kb on + strandat 988.070 kb on - strandat 988.102 kb on + strandat 988.121 kb on + strandat 988.129 kb on - strandat 988.129 kb on - strandat 988.130 kb on - strandat 988.136 kb on + strandat 988.165 kb on + strand, within CCNA_00908at 988.165 kb on + strand, within CCNA_00908at 988.165 kb on + strand, within CCNA_00908at 988.173 kb on - strand, within CCNA_00908at 988.178 kb on - strand, within CCNA_00908at 988.181 kb on + strand, within CCNA_00908at 988.189 kb on - strand, within CCNA_00908at 988.189 kb on - strand, within CCNA_00908at 988.200 kb on + strand, within CCNA_00908at 988.203 kb on - strand, within CCNA_00908at 988.208 kb on - strand, within CCNA_00908at 988.238 kb on + strand, within CCNA_00908at 988.341 kb on + strand, within CCNA_00908at 988.360 kb on - strand, within CCNA_00908at 988.376 kb on + strand, within CCNA_00908at 988.384 kb on - strand, within CCNA_00908at 988.384 kb on - strand, within CCNA_00908at 988.384 kb on - strand, within CCNA_00908at 988.384 kb on - strand, within CCNA_00908at 988.384 kb on - strand, within CCNA_00908at 988.386 kb on + strand, within CCNA_00908at 988.386 kb on + strand, within CCNA_00908at 988.395 kb on + strand, within CCNA_00908at 988.404 kb on + strand, within CCNA_00908at 988.404 kb on + strand, within CCNA_00908at 988.404 kb on + strand, within CCNA_00908at 988.456 kb on + strand, within CCNA_00908at 988.456 kb on + strand, within CCNA_00908at 988.456 kb on + strand, within CCNA_00908at 988.562 kb on - strand, within CCNA_00908at 988.575 kb on + strand, within CCNA_00908at 988.583 kb on - strand, within CCNA_00908at 988.621 kb on + strand, within CCNA_00908at 988.634 kb on + strand, within CCNA_00908at 988.636 kb on - strand, within CCNA_00908at 988.726 kb on + strand, within CCNA_00908at 988.741 kb on + strand, within CCNA_00908at 988.741 kb on + strand, within CCNA_00908at 988.795 kb on + strand, within CCNA_00908at 988.803 kb on - strand, within CCNA_00908at 988.837 kb on + strand, within CCNA_00908at 988.883 kb on - strand, within CCNA_00908at 988.927 kb on + strand, within CCNA_00908at 988.940 kb on - strand, within CCNA_00908at 988.950 kb on - strand, within CCNA_00908at 988.950 kb on - strand, within CCNA_00908at 988.967 kb on + strand, within CCNA_00908at 988.968 kb on - strand, within CCNA_00908at 989.049 kb on + strand, within CCNA_00908at 989.052 kb on - strand, within CCNA_00908at 989.098 kb on + strandat 989.098 kb on + strandat 989.116 kb on + strandat 989.131 kb on - strandat 989.156 kb on + strandat 989.164 kb on - strandat 989.195 kb on - strandat 989.211 kb on + strandat 989.219 kb on - strandat 989.221 kb on + strandat 989.236 kb on + strandat 989.236 kb on + strandat 989.242 kb on - strandat 989.244 kb on - strandat 989.255 kb on - strandat 989.264 kb on + strandat 989.298 kb on - strandat 989.367 kb on + strand, within CCNA_00909at 989.375 kb on - strand, within CCNA_00909at 989.392 kb on + strand, within CCNA_00909at 989.412 kb on - strand, within CCNA_00909at 989.415 kb on + strand, within CCNA_00909at 989.428 kb on + strand, within CCNA_00909at 989.450 kb on + strand, within CCNA_00909at 989.455 kb on + strand, within CCNA_00909at 989.458 kb on - strand, within CCNA_00909at 989.463 kb on - strand, within CCNA_00909at 989.509 kb on + strand, within CCNA_00909at 989.509 kb on + strand, within CCNA_00909at 989.514 kb on + strand, within CCNA_00909at 989.517 kb on - strand, within CCNA_00909at 989.517 kb on - strand, within CCNA_00909at 989.517 kb on - strand, within CCNA_00909at 989.517 kb on - strand, within CCNA_00909at 989.536 kb on - strand, within CCNA_00909at 989.542 kb on - strand, within CCNA_00909at 989.549 kb on + strand, within CCNA_00909at 989.561 kb on + strand, within CCNA_00909at 989.566 kb on + strand, within CCNA_00909at 989.588 kb on - strand, within CCNA_00909at 989.617 kb on + strand, within CCNA_00909at 989.617 kb on + strand, within CCNA_00909at 989.622 kb on + strand, within CCNA_00909at 989.625 kb on - strand, within CCNA_00909at 989.625 kb on - strand, within CCNA_00909at 989.625 kb on - strand, within CCNA_00909at 989.625 kb on - strand, within CCNA_00909at 989.646 kb on + strand, within CCNA_00909at 989.651 kb on + strand, within CCNA_00909at 989.651 kb on + strand, within CCNA_00909at 989.659 kb on - strand, within CCNA_00909at 989.659 kb on - strand, within CCNA_00909at 989.659 kb on - strand, within CCNA_00909at 989.675 kb on - strand, within CCNA_00909at 989.675 kb on - strand, within CCNA_00909at 989.867 kb on - strand, within CCNA_00909at 989.877 kb on - strand, within CCNA_00909at 989.896 kb on - strand, within CCNA_00909at 989.936 kb on + strandat 989.944 kb on - strandat 989.944 kb on - strandat 990.031 kb on + strandat 990.044 kb on + strandat 990.047 kb on - strandat 990.064 kb on + strandat 990.127 kb on - strandat 990.139 kb on + strandat 990.146 kb on + strandat 990.147 kb on - strandat 990.180 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL
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987,047 - CCNA_00906 0.63 +0.7
987,074 + CCNA_00906 0.66 -1.9
987,075 + CCNA_00906 0.67 -0.6
987,082 - CCNA_00906 0.67 +0.1
987,087 + CCNA_00906 0.68 -0.9
987,087 + CCNA_00906 0.68 +0.5
987,118 + CCNA_00906 0.71 +1.1
987,130 - CCNA_00906 0.73 -0.6
987,135 - CCNA_00906 0.73 +0.3
987,135 - CCNA_00906 0.73 +0.9
987,135 - CCNA_00906 0.73 +0.1
987,142 + CCNA_00906 0.74 +1.0
987,149 + CCNA_00906 0.75 +0.8
987,152 - CCNA_00906 0.75 +0.7
987,152 - CCNA_00906 0.75 -0.1
987,164 + CCNA_00906 0.76 -0.5
987,231 - CCNA_00906 0.84 -0.1
987,231 - CCNA_00906 0.84 -1.1
987,231 - CCNA_00906 0.84 -0.1
987,259 + CCNA_00906 0.87 +1.2
987,259 + CCNA_00906 0.87 -1.4
987,261 - CCNA_00906 0.87 -1.3
987,267 - CCNA_00906 0.88 +0.4
987,267 - CCNA_00906 0.88 -0.3
987,267 - CCNA_00906 0.88 +1.9
987,267 - CCNA_00906 0.88 -0.6
987,269 + CCNA_00906 0.88 -3.7
987,269 - CCNA_00906 0.88 -0.5
987,275 + CCNA_00906 0.88 -0.6
987,282 - CCNA_00906 0.89 -0.5
987,305 + +1.1
987,305 + -0.3
987,311 + +0.0
987,339 + -0.6
987,405 + -0.9
987,405 + -1.1
987,405 + +2.2
987,413 - +0.1
987,413 - -0.3
987,464 + CCNA_00907 0.12 -1.3
987,464 + CCNA_00907 0.12 -0.2
987,494 - CCNA_00907 0.16 -2.3
987,513 - CCNA_00907 0.19 -0.2
987,524 + CCNA_00907 0.20 -0.8
987,535 - CCNA_00907 0.22 +0.1
987,535 - CCNA_00907 0.22 +0.1
987,540 - CCNA_00907 0.22 +0.5
987,544 + CCNA_00907 0.23 -0.2
987,549 + CCNA_00907 0.24 -0.1
987,559 + CCNA_00907 0.25 -0.9
987,572 - CCNA_00907 0.27 -0.9
987,641 - CCNA_00907 0.36 +0.7
987,652 + CCNA_00907 0.38 -0.2
987,669 + CCNA_00907 0.40 +0.4
987,677 + CCNA_00907 0.41 +2.1
987,806 + CCNA_00907 0.59 -0.6
987,814 - CCNA_00907 0.60 +1.9
987,823 + CCNA_00907 0.61 +0.1
987,823 + CCNA_00907 0.61 -1.2
987,823 + CCNA_00907 0.61 -0.1
987,830 - CCNA_00907 0.62 -0.5
987,831 - CCNA_00907 0.62 -0.6
987,879 + CCNA_00907 0.69 +0.5
987,879 + CCNA_00907 0.69 -0.8
987,879 + CCNA_00907 0.69 -0.6
987,886 - CCNA_00907 0.70 +0.1
987,886 - CCNA_00907 0.70 -0.5
987,887 - CCNA_00907 0.70 +1.4
987,900 - CCNA_00907 0.72 -0.7
987,956 + CCNA_00907 0.79 -0.3
987,956 + CCNA_00907 0.79 +0.3
987,956 + CCNA_00907 0.79 -0.2
987,964 - CCNA_00907 0.81 +0.9
987,970 + CCNA_00907 0.81 +0.3
988,001 - CCNA_00907 0.86 -0.1
988,005 - CCNA_00907 0.86 -0.2
988,021 - CCNA_00907 0.88 +0.5
988,052 + -0.3
988,052 + +0.1
988,052 + +0.2
988,052 + -2.9
988,052 + +0.7
988,052 + -0.8
988,052 + +0.2
988,060 - +0.7
988,060 - +0.0
988,062 + +0.0
988,070 - +0.4
988,102 + -1.0
988,121 + -2.1
988,129 - -0.4
988,129 - +1.2
988,130 - -0.4
988,136 + -0.4
988,165 + CCNA_00908 0.11 -0.1
988,165 + CCNA_00908 0.11 -1.0
988,165 + CCNA_00908 0.11 -0.5
988,173 - CCNA_00908 0.11 +1.5
988,178 - CCNA_00908 0.12 +0.9
988,181 + CCNA_00908 0.12 -2.0
988,189 - CCNA_00908 0.13 -0.4
988,189 - CCNA_00908 0.13 +0.4
988,200 + CCNA_00908 0.14 -0.0
988,203 - CCNA_00908 0.14 -0.2
988,208 - CCNA_00908 0.15 +0.7
988,238 + CCNA_00908 0.17 +0.8
988,341 + CCNA_00908 0.26 -0.4
988,360 - CCNA_00908 0.28 +0.3
988,376 + CCNA_00908 0.29 +0.6
988,384 - CCNA_00908 0.30 +0.1
988,384 - CCNA_00908 0.30 +0.4
988,384 - CCNA_00908 0.30 -0.1
988,384 - CCNA_00908 0.30 -0.0
988,384 - CCNA_00908 0.30 -0.1
988,386 + CCNA_00908 0.30 -0.3
988,386 + CCNA_00908 0.30 +0.3
988,395 + CCNA_00908 0.31 +0.1
988,404 + CCNA_00908 0.32 -1.2
988,404 + CCNA_00908 0.32 +0.1
988,404 + CCNA_00908 0.32 -0.3
988,456 + CCNA_00908 0.36 -0.3
988,456 + CCNA_00908 0.36 -0.5
988,456 + CCNA_00908 0.36 -0.2
988,562 - CCNA_00908 0.46 -0.0
988,575 + CCNA_00908 0.47 -0.8
988,583 - CCNA_00908 0.47 -2.5
988,621 + CCNA_00908 0.51 +0.8
988,634 + CCNA_00908 0.52 -0.5
988,636 - CCNA_00908 0.52 +1.4
988,726 + CCNA_00908 0.60 +0.5
988,741 + CCNA_00908 0.61 +0.2
988,741 + CCNA_00908 0.61 +1.6
988,795 + CCNA_00908 0.66 -2.0
988,803 - CCNA_00908 0.67 -0.3
988,837 + CCNA_00908 0.70 +0.4
988,883 - CCNA_00908 0.74 -0.5
988,927 + CCNA_00908 0.78 -1.6
988,940 - CCNA_00908 0.79 +0.9
988,950 - CCNA_00908 0.80 -0.1
988,950 - CCNA_00908 0.80 -0.6
988,967 + CCNA_00908 0.81 +0.4
988,968 - CCNA_00908 0.81 +0.2
989,049 + CCNA_00908 0.88 -0.8
989,052 - CCNA_00908 0.89 +1.0
989,098 + -0.2
989,098 + +0.2
989,116 + -1.2
989,131 - +0.2
989,156 + +0.7
989,164 - +0.5
989,195 - -0.4
989,211 + -0.2
989,219 - -0.1
989,221 + +0.1
989,236 + -0.3
989,236 + +0.7
989,242 - -0.3
989,244 - +0.0
989,255 - -0.8
989,264 + -0.2
989,298 - -0.4
989,367 + CCNA_00909 0.14 -0.5
989,375 - CCNA_00909 0.15 +0.5
989,392 + CCNA_00909 0.17 -1.2
989,412 - CCNA_00909 0.20 +0.1
989,415 + CCNA_00909 0.20 +0.3
989,428 + CCNA_00909 0.22 -0.2
989,450 + CCNA_00909 0.25 -0.3
989,455 + CCNA_00909 0.26 -1.0
989,458 - CCNA_00909 0.26 +0.2
989,463 - CCNA_00909 0.27 +0.2
989,509 + CCNA_00909 0.33 -0.2
989,509 + CCNA_00909 0.33 -0.0
989,514 + CCNA_00909 0.34 +0.1
989,517 - CCNA_00909 0.34 +0.1
989,517 - CCNA_00909 0.34 -2.0
989,517 - CCNA_00909 0.34 -1.1
989,517 - CCNA_00909 0.34 -0.4
989,536 - CCNA_00909 0.37 +0.1
989,542 - CCNA_00909 0.37 -0.5
989,549 + CCNA_00909 0.38 -0.7
989,561 + CCNA_00909 0.40 +0.4
989,566 + CCNA_00909 0.41 -0.4
989,588 - CCNA_00909 0.44 -0.4
989,617 + CCNA_00909 0.48 -0.0
989,617 + CCNA_00909 0.48 -0.3
989,622 + CCNA_00909 0.48 -0.2
989,625 - CCNA_00909 0.49 -0.2
989,625 - CCNA_00909 0.49 +0.6
989,625 - CCNA_00909 0.49 +0.4
989,625 - CCNA_00909 0.49 +0.8
989,646 + CCNA_00909 0.51 +0.2
989,651 + CCNA_00909 0.52 +0.3
989,651 + CCNA_00909 0.52 +0.7
989,659 - CCNA_00909 0.53 +0.9
989,659 - CCNA_00909 0.53 +0.2
989,659 - CCNA_00909 0.53 +0.2
989,675 - CCNA_00909 0.55 +0.7
989,675 - CCNA_00909 0.55 -0.6
989,867 - CCNA_00909 0.81 -0.2
989,877 - CCNA_00909 0.83 -1.0
989,896 - CCNA_00909 0.85 +0.6
989,936 + -1.1
989,944 - +0.1
989,944 - +0.0
990,031 + +0.7
990,044 + -0.2
990,047 - +0.1
990,064 + -1.0
990,127 - -0.5
990,139 + +0.4
990,146 + -2.2
990,147 - -0.0
990,180 - -0.7

Or see this region's nucleotide sequence