Experiment: PYE with CHIR-090 10 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00785 and CCNA_03938 are separated by 183 nucleotides CCNA_03938 and CCNA_00787 are separated by 111 nucleotides CCNA_00787 and CCNA_00788 are separated by 133 nucleotides
CCNA_00785: CCNA_00785 - tRNA methyltransferase/FAD-dependent oxidoreductase MnmC, at 848,157 to 849,932
_00785
CCNA_03938: CCNA_03938 - hypothetical protein, at 850,116 to 850,442
_03938
CCNA_00787: CCNA_00787 - chemotaxis motA protein, at 850,554 to 851,420
_00787
CCNA_00788: CCNA_00788 - transporter, major facilitator superfamily, at 851,554 to 852,870
_00788
Position (kb) 850
851
852 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 849.602 kb on + strand, within CCNA_00785 at 849.610 kb on - strand, within CCNA_00785 at 849.610 kb on - strand, within CCNA_00785 at 849.649 kb on + strand, within CCNA_00785 at 849.677 kb on - strand, within CCNA_00785 at 849.729 kb on + strand, within CCNA_00785 at 849.737 kb on - strand, within CCNA_00785 at 849.742 kb on + strand, within CCNA_00785 at 849.761 kb on + strand at 849.761 kb on + strand at 849.761 kb on + strand at 849.776 kb on + strand at 849.794 kb on - strand at 849.858 kb on - strand at 849.867 kb on + strand at 849.870 kb on - strand at 849.884 kb on - strand at 849.887 kb on + strand at 849.888 kb on + strand at 849.895 kb on - strand at 849.916 kb on - strand at 849.943 kb on - strand at 849.947 kb on + strand at 849.948 kb on + strand at 849.956 kb on - strand at 849.956 kb on - strand at 849.958 kb on + strand at 849.981 kb on + strand at 850.021 kb on + strand at 850.037 kb on + strand at 850.037 kb on + strand at 850.037 kb on + strand at 850.037 kb on + strand at 850.037 kb on + strand at 850.045 kb on - strand at 850.047 kb on + strand at 850.051 kb on - strand at 850.054 kb on + strand at 850.054 kb on + strand at 850.088 kb on - strand at 850.088 kb on - strand at 850.126 kb on + strand at 850.126 kb on + strand at 850.134 kb on - strand at 850.134 kb on - strand at 850.134 kb on - strand at 850.134 kb on - strand at 850.139 kb on - strand at 850.149 kb on - strand, within CCNA_03938 at 850.361 kb on + strand, within CCNA_03938 at 850.408 kb on + strand, within CCNA_03938 at 850.430 kb on + strand at 850.438 kb on - strand at 850.438 kb on - strand at 850.446 kb on - strand at 850.541 kb on - strand at 850.546 kb on + strand at 850.546 kb on + strand at 850.546 kb on + strand at 850.554 kb on - strand at 850.554 kb on - strand at 850.554 kb on - strand at 850.605 kb on - strand at 850.612 kb on + strand at 850.647 kb on + strand, within CCNA_00787 at 850.677 kb on + strand, within CCNA_00787 at 850.685 kb on - strand, within CCNA_00787 at 850.691 kb on + strand, within CCNA_00787 at 850.704 kb on - strand, within CCNA_00787 at 850.732 kb on - strand, within CCNA_00787 at 850.750 kb on + strand, within CCNA_00787 at 850.755 kb on + strand, within CCNA_00787 at 850.755 kb on + strand, within CCNA_00787 at 850.763 kb on - strand, within CCNA_00787 at 850.768 kb on - strand, within CCNA_00787 at 850.768 kb on - strand, within CCNA_00787 at 850.769 kb on - strand, within CCNA_00787 at 850.773 kb on + strand, within CCNA_00787 at 850.780 kb on + strand, within CCNA_00787 at 850.788 kb on - strand, within CCNA_00787 at 850.802 kb on - strand, within CCNA_00787 at 850.824 kb on - strand, within CCNA_00787 at 850.826 kb on - strand, within CCNA_00787 at 850.887 kb on + strand, within CCNA_00787 at 850.895 kb on - strand, within CCNA_00787 at 850.895 kb on - strand, within CCNA_00787 at 850.895 kb on - strand, within CCNA_00787 at 850.924 kb on - strand, within CCNA_00787 at 850.933 kb on + strand, within CCNA_00787 at 850.936 kb on - strand, within CCNA_00787 at 850.991 kb on + strand, within CCNA_00787 at 850.999 kb on + strand, within CCNA_00787 at 850.999 kb on - strand, within CCNA_00787 at 851.014 kb on + strand, within CCNA_00787 at 851.014 kb on - strand, within CCNA_00787 at 851.019 kb on + strand, within CCNA_00787 at 851.022 kb on + strand, within CCNA_00787 at 851.045 kb on - strand, within CCNA_00787 at 851.069 kb on + strand, within CCNA_00787 at 851.069 kb on + strand, within CCNA_00787 at 851.076 kb on - strand, within CCNA_00787 at 851.077 kb on - strand, within CCNA_00787 at 851.077 kb on - strand, within CCNA_00787 at 851.077 kb on - strand, within CCNA_00787 at 851.077 kb on - strand, within CCNA_00787 at 851.145 kb on - strand, within CCNA_00787 at 851.145 kb on - strand, within CCNA_00787 at 851.146 kb on - strand, within CCNA_00787 at 851.152 kb on + strand, within CCNA_00787 at 851.191 kb on - strand, within CCNA_00787 at 851.191 kb on - strand, within CCNA_00787 at 851.193 kb on + strand, within CCNA_00787 at 851.216 kb on - strand, within CCNA_00787 at 851.237 kb on + strand, within CCNA_00787 at 851.251 kb on - strand, within CCNA_00787 at 851.256 kb on - strand, within CCNA_00787 at 851.261 kb on - strand, within CCNA_00787 at 851.264 kb on + strand, within CCNA_00787 at 851.315 kb on - strand, within CCNA_00787 at 851.329 kb on + strand, within CCNA_00787 at 851.381 kb on - strand at 851.386 kb on + strand at 851.399 kb on - strand at 851.399 kb on - strand at 851.399 kb on - strand at 851.404 kb on - strand at 851.419 kb on + strand at 851.485 kb on - strand at 851.486 kb on + strand at 851.494 kb on - strand at 851.525 kb on + strand at 851.557 kb on + strand at 851.565 kb on + strand at 851.605 kb on + strand at 851.629 kb on + strand at 851.637 kb on - strand at 851.721 kb on + strand, within CCNA_00788 at 851.759 kb on - strand, within CCNA_00788 at 851.764 kb on - strand, within CCNA_00788 at 851.765 kb on + strand, within CCNA_00788 at 851.773 kb on - strand, within CCNA_00788 at 851.780 kb on + strand, within CCNA_00788 at 851.796 kb on - strand, within CCNA_00788 at 851.806 kb on + strand, within CCNA_00788 at 851.813 kb on + strand, within CCNA_00788 at 851.813 kb on + strand, within CCNA_00788 at 851.821 kb on - strand, within CCNA_00788 at 851.821 kb on - strand, within CCNA_00788 at 851.823 kb on + strand, within CCNA_00788 at 851.823 kb on + strand, within CCNA_00788 at 851.831 kb on - strand, within CCNA_00788 at 851.857 kb on + strand, within CCNA_00788 at 851.865 kb on - strand, within CCNA_00788 at 851.873 kb on - strand, within CCNA_00788 at 851.893 kb on + strand, within CCNA_00788 at 851.896 kb on - strand, within CCNA_00788 at 851.898 kb on + strand, within CCNA_00788 at 851.898 kb on + strand, within CCNA_00788 at 851.917 kb on + strand, within CCNA_00788 at 851.919 kb on + strand, within CCNA_00788 at 851.927 kb on - strand, within CCNA_00788 at 851.953 kb on + strand, within CCNA_00788 at 851.961 kb on - strand, within CCNA_00788 at 851.961 kb on - strand, within CCNA_00788 at 851.961 kb on - strand, within CCNA_00788 at 851.989 kb on - strand, within CCNA_00788 at 852.000 kb on + strand, within CCNA_00788 at 852.023 kb on + strand, within CCNA_00788 at 852.023 kb on + strand, within CCNA_00788 at 852.023 kb on + strand, within CCNA_00788 at 852.031 kb on - strand, within CCNA_00788 at 852.031 kb on - strand, within CCNA_00788 at 852.031 kb on - strand, within CCNA_00788 at 852.031 kb on - strand, within CCNA_00788 at 852.031 kb on - strand, within CCNA_00788 at 852.033 kb on + strand, within CCNA_00788 at 852.052 kb on + strand, within CCNA_00788 at 852.080 kb on + strand, within CCNA_00788 at 852.080 kb on + strand, within CCNA_00788 at 852.093 kb on - strand, within CCNA_00788 at 852.108 kb on - strand, within CCNA_00788 at 852.152 kb on - strand, within CCNA_00788 at 852.245 kb on + strand, within CCNA_00788 at 852.258 kb on + strand, within CCNA_00788 at 852.258 kb on + strand, within CCNA_00788 at 852.258 kb on + strand, within CCNA_00788 at 852.289 kb on - strand, within CCNA_00788 at 852.307 kb on + strand, within CCNA_00788 at 852.312 kb on + strand, within CCNA_00788 at 852.315 kb on - strand, within CCNA_00788 at 852.321 kb on - strand, within CCNA_00788 at 852.327 kb on - strand, within CCNA_00788 at 852.327 kb on - strand, within CCNA_00788 at 852.327 kb on - strand, within CCNA_00788 at 852.367 kb on + strand, within CCNA_00788 at 852.368 kb on - strand, within CCNA_00788 at 852.382 kb on + strand, within CCNA_00788 at 852.387 kb on + strand, within CCNA_00788
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL remove 849,602 + CCNA_00785 0.81 -0.3 849,610 - CCNA_00785 0.82 +0.3 849,610 - CCNA_00785 0.82 -0.1 849,649 + CCNA_00785 0.84 -0.1 849,677 - CCNA_00785 0.86 +0.7 849,729 + CCNA_00785 0.89 -1.5 849,737 - CCNA_00785 0.89 +0.0 849,742 + CCNA_00785 0.89 -0.1 849,761 + -0.5 849,761 + -0.6 849,761 + -0.7 849,776 + -1.8 849,794 - -0.1 849,858 - +0.2 849,867 + -0.6 849,870 - -0.8 849,884 - +0.1 849,887 + +0.1 849,888 + -0.1 849,895 - -0.2 849,916 - +0.3 849,943 - +0.3 849,947 + +0.2 849,948 + +0.0 849,956 - +0.3 849,956 - +0.7 849,958 + +1.3 849,981 + +0.2 850,021 + -0.1 850,037 + -0.3 850,037 + -1.2 850,037 + -0.1 850,037 + +0.8 850,037 + +0.5 850,045 - -0.3 850,047 + +0.1 850,051 - -1.6 850,054 + +0.3 850,054 + +0.4 850,088 - +0.2 850,088 - +0.4 850,126 + +0.3 850,126 + +0.4 850,134 - -0.1 850,134 - -0.9 850,134 - +0.6 850,134 - -0.5 850,139 - -0.1 850,149 - CCNA_03938 0.10 +1.0 850,361 + CCNA_03938 0.75 +0.1 850,408 + CCNA_03938 0.89 -0.7 850,430 + -0.3 850,438 - +0.5 850,438 - +0.4 850,446 - +0.3 850,541 - +0.1 850,546 + -2.2 850,546 + +0.3 850,546 + +0.8 850,554 - -0.1 850,554 - -0.1 850,554 - +0.3 850,605 - +0.4 850,612 + -0.1 850,647 + CCNA_00787 0.11 -2.9 850,677 + CCNA_00787 0.14 +1.9 850,685 - CCNA_00787 0.15 -0.6 850,691 + CCNA_00787 0.16 +0.1 850,704 - CCNA_00787 0.17 +0.1 850,732 - CCNA_00787 0.21 -0.1 850,750 + CCNA_00787 0.23 -0.9 850,755 + CCNA_00787 0.23 +0.7 850,755 + CCNA_00787 0.23 -0.1 850,763 - CCNA_00787 0.24 +0.7 850,768 - CCNA_00787 0.25 -0.1 850,768 - CCNA_00787 0.25 -0.7 850,769 - CCNA_00787 0.25 +0.6 850,773 + CCNA_00787 0.25 -0.7 850,780 + CCNA_00787 0.26 +0.5 850,788 - CCNA_00787 0.27 -0.2 850,802 - CCNA_00787 0.29 +0.6 850,824 - CCNA_00787 0.31 +0.3 850,826 - CCNA_00787 0.31 -0.1 850,887 + CCNA_00787 0.38 +0.5 850,895 - CCNA_00787 0.39 -0.2 850,895 - CCNA_00787 0.39 -0.3 850,895 - CCNA_00787 0.39 +0.2 850,924 - CCNA_00787 0.43 -0.3 850,933 + CCNA_00787 0.44 -1.0 850,936 - CCNA_00787 0.44 +0.8 850,991 + CCNA_00787 0.50 -0.8 850,999 + CCNA_00787 0.51 -0.7 850,999 - CCNA_00787 0.51 +0.5 851,014 + CCNA_00787 0.53 -0.9 851,014 - CCNA_00787 0.53 +2.2 851,019 + CCNA_00787 0.54 +0.0 851,022 + CCNA_00787 0.54 +0.4 851,045 - CCNA_00787 0.57 +0.1 851,069 + CCNA_00787 0.59 -0.6 851,069 + CCNA_00787 0.59 -1.3 851,076 - CCNA_00787 0.60 +0.2 851,077 - CCNA_00787 0.60 +0.4 851,077 - CCNA_00787 0.60 +0.4 851,077 - CCNA_00787 0.60 +0.6 851,077 - CCNA_00787 0.60 +0.3 851,145 - CCNA_00787 0.68 +0.2 851,145 - CCNA_00787 0.68 +0.3 851,146 - CCNA_00787 0.68 +1.1 851,152 + CCNA_00787 0.69 +0.8 851,191 - CCNA_00787 0.73 +0.6 851,191 - CCNA_00787 0.73 -0.3 851,193 + CCNA_00787 0.74 -1.8 851,216 - CCNA_00787 0.76 -1.4 851,237 + CCNA_00787 0.79 -0.3 851,251 - CCNA_00787 0.80 +0.1 851,256 - CCNA_00787 0.81 +0.2 851,261 - CCNA_00787 0.82 +0.3 851,264 + CCNA_00787 0.82 -0.0 851,315 - CCNA_00787 0.88 +0.7 851,329 + CCNA_00787 0.89 +0.3 851,381 - +0.3 851,386 + -2.6 851,399 - +0.2 851,399 - -0.2 851,399 - -0.7 851,404 - -0.5 851,419 + -0.0 851,485 - -0.1 851,486 + -0.4 851,494 - +2.7 851,525 + +0.4 851,557 + -0.7 851,565 + -3.0 851,605 + +0.5 851,629 + +0.0 851,637 - +0.7 851,721 + CCNA_00788 0.13 -1.1 851,759 - CCNA_00788 0.16 +2.7 851,764 - CCNA_00788 0.16 -0.8 851,765 + CCNA_00788 0.16 -0.5 851,773 - CCNA_00788 0.17 -1.7 851,780 + CCNA_00788 0.17 -0.6 851,796 - CCNA_00788 0.18 +0.1 851,806 + CCNA_00788 0.19 +0.2 851,813 + CCNA_00788 0.20 +0.2 851,813 + CCNA_00788 0.20 +0.1 851,821 - CCNA_00788 0.20 -0.3 851,821 - CCNA_00788 0.20 +1.8 851,823 + CCNA_00788 0.20 -0.4 851,823 + CCNA_00788 0.20 +1.1 851,831 - CCNA_00788 0.21 +0.4 851,857 + CCNA_00788 0.23 -0.7 851,865 - CCNA_00788 0.24 -0.4 851,873 - CCNA_00788 0.24 +1.0 851,893 + CCNA_00788 0.26 -0.2 851,896 - CCNA_00788 0.26 +0.1 851,898 + CCNA_00788 0.26 -0.1 851,898 + CCNA_00788 0.26 -0.2 851,917 + CCNA_00788 0.28 +1.1 851,919 + CCNA_00788 0.28 +1.7 851,927 - CCNA_00788 0.28 +0.3 851,953 + CCNA_00788 0.30 -0.9 851,961 - CCNA_00788 0.31 +0.9 851,961 - CCNA_00788 0.31 -0.7 851,961 - CCNA_00788 0.31 +1.5 851,989 - CCNA_00788 0.33 +0.9 852,000 + CCNA_00788 0.34 +0.3 852,023 + CCNA_00788 0.36 -0.2 852,023 + CCNA_00788 0.36 -2.7 852,023 + CCNA_00788 0.36 -0.2 852,031 - CCNA_00788 0.36 +0.8 852,031 - CCNA_00788 0.36 +2.2 852,031 - CCNA_00788 0.36 +0.5 852,031 - CCNA_00788 0.36 -0.4 852,031 - CCNA_00788 0.36 +0.0 852,033 + CCNA_00788 0.36 +1.7 852,052 + CCNA_00788 0.38 -0.2 852,080 + CCNA_00788 0.40 +0.4 852,080 + CCNA_00788 0.40 -0.4 852,093 - CCNA_00788 0.41 -0.8 852,108 - CCNA_00788 0.42 +0.2 852,152 - CCNA_00788 0.45 -1.3 852,245 + CCNA_00788 0.52 -0.2 852,258 + CCNA_00788 0.53 +0.4 852,258 + CCNA_00788 0.53 +0.9 852,258 + CCNA_00788 0.53 +0.2 852,289 - CCNA_00788 0.56 -0.3 852,307 + CCNA_00788 0.57 -1.1 852,312 + CCNA_00788 0.58 +0.2 852,315 - CCNA_00788 0.58 +0.1 852,321 - CCNA_00788 0.58 -0.5 852,327 - CCNA_00788 0.59 +0.8 852,327 - CCNA_00788 0.59 +0.7 852,327 - CCNA_00788 0.59 +0.2 852,367 + CCNA_00788 0.62 +0.7 852,368 - CCNA_00788 0.62 -1.9 852,382 + CCNA_00788 0.63 +0.1 852,387 + CCNA_00788 0.63 +1.2
Or see this region's nucleotide sequence