Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00775

Experiment: PYE with CHIR-090 10 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00774 and CCNA_00775 are separated by 9 nucleotidesCCNA_00775 and CCNA_00776 are separated by 92 nucleotides CCNA_00774: CCNA_00774 - ring hydroxylating diooxygenase, at 829,317 to 830,426 _00774 CCNA_00775: CCNA_00775 - aspartate aminotransferase, at 830,436 to 831,593 _00775 CCNA_00776: CCNA_00776 - OAR protein precursor, at 831,686 to 835,249 _00776 Position (kb) 830 831 832Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 829.481 kb on - strand, within CCNA_00774at 829.494 kb on + strand, within CCNA_00774at 829.494 kb on + strand, within CCNA_00774at 829.499 kb on + strand, within CCNA_00774at 829.499 kb on + strand, within CCNA_00774at 829.502 kb on - strand, within CCNA_00774at 829.507 kb on - strand, within CCNA_00774at 829.507 kb on - strand, within CCNA_00774at 829.507 kb on - strand, within CCNA_00774at 829.507 kb on - strand, within CCNA_00774at 829.507 kb on - strand, within CCNA_00774at 829.507 kb on - strand, within CCNA_00774at 829.507 kb on - strand, within CCNA_00774at 829.549 kb on - strand, within CCNA_00774at 829.631 kb on - strand, within CCNA_00774at 829.631 kb on - strand, within CCNA_00774at 829.696 kb on + strand, within CCNA_00774at 829.702 kb on - strand, within CCNA_00774at 829.725 kb on + strand, within CCNA_00774at 829.749 kb on - strand, within CCNA_00774at 829.754 kb on - strand, within CCNA_00774at 829.797 kb on - strand, within CCNA_00774at 829.826 kb on - strand, within CCNA_00774at 829.827 kb on + strand, within CCNA_00774at 829.835 kb on - strand, within CCNA_00774at 829.840 kb on - strand, within CCNA_00774at 829.865 kb on + strand, within CCNA_00774at 829.868 kb on - strand, within CCNA_00774at 829.874 kb on - strand, within CCNA_00774at 829.889 kb on - strand, within CCNA_00774at 829.932 kb on - strand, within CCNA_00774at 829.957 kb on + strand, within CCNA_00774at 830.006 kb on + strand, within CCNA_00774at 830.006 kb on + strand, within CCNA_00774at 830.012 kb on + strand, within CCNA_00774at 830.012 kb on + strand, within CCNA_00774at 830.012 kb on + strand, within CCNA_00774at 830.012 kb on + strand, within CCNA_00774at 830.014 kb on - strand, within CCNA_00774at 830.021 kb on - strand, within CCNA_00774at 830.021 kb on - strand, within CCNA_00774at 830.022 kb on + strand, within CCNA_00774at 830.091 kb on - strand, within CCNA_00774at 830.106 kb on + strand, within CCNA_00774at 830.198 kb on + strand, within CCNA_00774at 830.210 kb on + strand, within CCNA_00774at 830.265 kb on + strand, within CCNA_00774at 830.273 kb on + strand, within CCNA_00774at 830.273 kb on + strand, within CCNA_00774at 830.289 kb on + strand, within CCNA_00774at 830.289 kb on + strand, within CCNA_00774at 830.297 kb on - strand, within CCNA_00774at 830.297 kb on - strand, within CCNA_00774at 830.308 kb on + strand, within CCNA_00774at 830.316 kb on - strandat 830.316 kb on - strandat 830.321 kb on - strandat 830.329 kb on - strandat 830.337 kb on - strandat 830.347 kb on - strandat 830.419 kb on - strandat 830.420 kb on + strandat 830.428 kb on - strandat 830.431 kb on + strandat 830.439 kb on - strandat 830.441 kb on - strandat 830.556 kb on - strand, within CCNA_00775at 830.581 kb on + strand, within CCNA_00775at 830.696 kb on + strand, within CCNA_00775at 830.696 kb on - strand, within CCNA_00775at 830.699 kb on - strand, within CCNA_00775at 830.752 kb on - strand, within CCNA_00775at 830.763 kb on - strand, within CCNA_00775at 830.773 kb on + strand, within CCNA_00775at 830.790 kb on - strand, within CCNA_00775at 830.814 kb on + strand, within CCNA_00775at 830.822 kb on - strand, within CCNA_00775at 830.847 kb on + strand, within CCNA_00775at 830.855 kb on - strand, within CCNA_00775at 830.863 kb on + strand, within CCNA_00775at 830.927 kb on - strand, within CCNA_00775at 830.927 kb on - strand, within CCNA_00775at 830.952 kb on + strand, within CCNA_00775at 830.952 kb on + strand, within CCNA_00775at 830.995 kb on + strand, within CCNA_00775at 831.003 kb on - strand, within CCNA_00775at 831.039 kb on + strand, within CCNA_00775at 831.060 kb on + strand, within CCNA_00775at 831.065 kb on + strand, within CCNA_00775at 831.102 kb on + strand, within CCNA_00775at 831.102 kb on + strand, within CCNA_00775at 831.105 kb on - strand, within CCNA_00775at 831.110 kb on - strand, within CCNA_00775at 831.176 kb on - strand, within CCNA_00775at 831.191 kb on + strand, within CCNA_00775at 831.227 kb on + strand, within CCNA_00775at 831.232 kb on + strand, within CCNA_00775at 831.240 kb on - strand, within CCNA_00775at 831.244 kb on + strand, within CCNA_00775at 831.252 kb on - strand, within CCNA_00775at 831.254 kb on + strand, within CCNA_00775at 831.298 kb on + strand, within CCNA_00775at 831.298 kb on + strand, within CCNA_00775at 831.314 kb on + strand, within CCNA_00775at 831.321 kb on + strand, within CCNA_00775at 831.356 kb on + strand, within CCNA_00775at 831.356 kb on + strand, within CCNA_00775at 831.364 kb on - strand, within CCNA_00775at 831.379 kb on - strand, within CCNA_00775at 831.393 kb on + strand, within CCNA_00775at 831.398 kb on + strand, within CCNA_00775at 831.398 kb on + strand, within CCNA_00775at 831.398 kb on + strand, within CCNA_00775at 831.398 kb on + strand, within CCNA_00775at 831.406 kb on - strand, within CCNA_00775at 831.406 kb on - strand, within CCNA_00775at 831.442 kb on + strand, within CCNA_00775at 831.450 kb on - strand, within CCNA_00775at 831.498 kb on + strandat 831.501 kb on - strandat 831.511 kb on - strandat 831.525 kb on - strandat 831.686 kb on - strandat 831.698 kb on + strandat 831.796 kb on - strandat 831.852 kb on + strandat 831.852 kb on + strandat 831.859 kb on + strandat 831.892 kb on + strandat 831.939 kb on - strandat 831.939 kb on - strandat 831.939 kb on - strandat 831.940 kb on - strandat 831.979 kb on - strandat 832.017 kb on + strandat 832.086 kb on + strand, within CCNA_00776at 832.087 kb on - strand, within CCNA_00776at 832.109 kb on - strand, within CCNA_00776at 832.109 kb on - strand, within CCNA_00776at 832.109 kb on - strand, within CCNA_00776at 832.109 kb on - strand, within CCNA_00776at 832.159 kb on - strand, within CCNA_00776at 832.168 kb on + strand, within CCNA_00776at 832.168 kb on + strand, within CCNA_00776at 832.178 kb on + strand, within CCNA_00776at 832.178 kb on + strand, within CCNA_00776at 832.178 kb on + strand, within CCNA_00776at 832.178 kb on + strand, within CCNA_00776at 832.186 kb on - strand, within CCNA_00776at 832.186 kb on - strand, within CCNA_00776at 832.204 kb on - strand, within CCNA_00776at 832.300 kb on + strand, within CCNA_00776at 832.327 kb on - strand, within CCNA_00776at 832.338 kb on - strand, within CCNA_00776at 832.362 kb on - strand, within CCNA_00776at 832.403 kb on + strand, within CCNA_00776at 832.411 kb on - strand, within CCNA_00776at 832.417 kb on - strand, within CCNA_00776at 832.431 kb on + strand, within CCNA_00776at 832.431 kb on + strand, within CCNA_00776at 832.439 kb on - strand, within CCNA_00776at 832.439 kb on - strand, within CCNA_00776at 832.460 kb on - strand, within CCNA_00776at 832.470 kb on + strand, within CCNA_00776at 832.472 kb on + strand, within CCNA_00776at 832.514 kb on + strand, within CCNA_00776at 832.514 kb on + strand, within CCNA_00776at 832.522 kb on - strand, within CCNA_00776at 832.583 kb on + strand, within CCNA_00776at 832.583 kb on + strand, within CCNA_00776at 832.591 kb on - strand, within CCNA_00776

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL
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829,481 - CCNA_00774 0.15 -1.2
829,494 + CCNA_00774 0.16 -0.3
829,494 + CCNA_00774 0.16 -0.3
829,499 + CCNA_00774 0.16 +1.8
829,499 + CCNA_00774 0.16 +0.5
829,502 - CCNA_00774 0.17 -0.8
829,507 - CCNA_00774 0.17 -0.2
829,507 - CCNA_00774 0.17 -1.5
829,507 - CCNA_00774 0.17 -0.1
829,507 - CCNA_00774 0.17 -0.4
829,507 - CCNA_00774 0.17 -0.1
829,507 - CCNA_00774 0.17 -0.0
829,507 - CCNA_00774 0.17 -0.6
829,549 - CCNA_00774 0.21 -1.9
829,631 - CCNA_00774 0.28 +0.2
829,631 - CCNA_00774 0.28 +0.4
829,696 + CCNA_00774 0.34 -0.6
829,702 - CCNA_00774 0.35 -0.5
829,725 + CCNA_00774 0.37 +1.4
829,749 - CCNA_00774 0.39 -0.8
829,754 - CCNA_00774 0.39 +0.3
829,797 - CCNA_00774 0.43 -0.1
829,826 - CCNA_00774 0.46 -0.5
829,827 + CCNA_00774 0.46 -1.2
829,835 - CCNA_00774 0.47 +0.5
829,840 - CCNA_00774 0.47 -0.6
829,865 + CCNA_00774 0.49 -1.6
829,868 - CCNA_00774 0.50 -1.1
829,874 - CCNA_00774 0.50 -1.0
829,889 - CCNA_00774 0.52 -0.2
829,932 - CCNA_00774 0.55 +0.8
829,957 + CCNA_00774 0.58 +0.3
830,006 + CCNA_00774 0.62 -1.4
830,006 + CCNA_00774 0.62 -0.1
830,012 + CCNA_00774 0.63 +1.4
830,012 + CCNA_00774 0.63 -0.8
830,012 + CCNA_00774 0.63 +0.4
830,012 + CCNA_00774 0.63 +0.1
830,014 - CCNA_00774 0.63 -0.5
830,021 - CCNA_00774 0.63 +0.1
830,021 - CCNA_00774 0.63 -0.6
830,022 + CCNA_00774 0.64 +1.9
830,091 - CCNA_00774 0.70 +0.5
830,106 + CCNA_00774 0.71 +0.2
830,198 + CCNA_00774 0.79 -0.0
830,210 + CCNA_00774 0.80 +0.2
830,265 + CCNA_00774 0.85 -0.5
830,273 + CCNA_00774 0.86 +0.3
830,273 + CCNA_00774 0.86 -0.7
830,289 + CCNA_00774 0.88 +0.0
830,289 + CCNA_00774 0.88 -0.3
830,297 - CCNA_00774 0.88 -0.5
830,297 - CCNA_00774 0.88 -0.5
830,308 + CCNA_00774 0.89 -1.2
830,316 - -0.2
830,316 - +0.3
830,321 - +0.4
830,329 - +0.0
830,337 - -0.1
830,347 - +0.0
830,419 - -0.1
830,420 + -0.7
830,428 - -0.5
830,431 + -0.2
830,439 - -0.1
830,441 - +1.0
830,556 - CCNA_00775 0.10 -0.5
830,581 + CCNA_00775 0.13 +0.1
830,696 + CCNA_00775 0.22 -0.7
830,696 - CCNA_00775 0.22 +1.0
830,699 - CCNA_00775 0.23 +0.7
830,752 - CCNA_00775 0.27 +1.1
830,763 - CCNA_00775 0.28 +1.3
830,773 + CCNA_00775 0.29 -0.4
830,790 - CCNA_00775 0.31 +0.0
830,814 + CCNA_00775 0.33 -0.4
830,822 - CCNA_00775 0.33 +0.5
830,847 + CCNA_00775 0.35 -0.4
830,855 - CCNA_00775 0.36 +0.4
830,863 + CCNA_00775 0.37 +1.0
830,927 - CCNA_00775 0.42 +0.6
830,927 - CCNA_00775 0.42 +1.4
830,952 + CCNA_00775 0.45 -0.0
830,952 + CCNA_00775 0.45 -0.3
830,995 + CCNA_00775 0.48 -0.3
831,003 - CCNA_00775 0.49 -0.3
831,039 + CCNA_00775 0.52 -0.3
831,060 + CCNA_00775 0.54 -3.6
831,065 + CCNA_00775 0.54 -0.2
831,102 + CCNA_00775 0.58 -0.3
831,102 + CCNA_00775 0.58 +0.6
831,105 - CCNA_00775 0.58 +0.2
831,110 - CCNA_00775 0.58 -0.3
831,176 - CCNA_00775 0.64 +0.4
831,191 + CCNA_00775 0.65 -0.1
831,227 + CCNA_00775 0.68 +0.9
831,232 + CCNA_00775 0.69 -1.0
831,240 - CCNA_00775 0.69 -0.5
831,244 + CCNA_00775 0.70 +1.3
831,252 - CCNA_00775 0.70 +0.1
831,254 + CCNA_00775 0.71 -0.0
831,298 + CCNA_00775 0.74 -0.8
831,298 + CCNA_00775 0.74 -0.2
831,314 + CCNA_00775 0.76 +0.0
831,321 + CCNA_00775 0.76 -0.3
831,356 + CCNA_00775 0.79 -0.2
831,356 + CCNA_00775 0.79 -0.7
831,364 - CCNA_00775 0.80 -0.2
831,379 - CCNA_00775 0.81 -0.0
831,393 + CCNA_00775 0.83 -0.8
831,398 + CCNA_00775 0.83 +0.8
831,398 + CCNA_00775 0.83 -0.5
831,398 + CCNA_00775 0.83 -0.1
831,398 + CCNA_00775 0.83 +0.1
831,406 - CCNA_00775 0.84 +0.5
831,406 - CCNA_00775 0.84 +0.4
831,442 + CCNA_00775 0.87 -0.8
831,450 - CCNA_00775 0.88 -1.5
831,498 + +0.2
831,501 - +0.3
831,511 - -0.6
831,525 - -0.9
831,686 - +0.2
831,698 + +1.4
831,796 - +0.8
831,852 + +0.1
831,852 + +0.2
831,859 + +0.9
831,892 + -1.5
831,939 - +0.9
831,939 - -1.1
831,939 - -0.3
831,940 - -0.7
831,979 - +0.3
832,017 + +0.0
832,086 + CCNA_00776 0.11 -0.9
832,087 - CCNA_00776 0.11 -0.5
832,109 - CCNA_00776 0.12 +0.2
832,109 - CCNA_00776 0.12 +0.2
832,109 - CCNA_00776 0.12 -0.3
832,109 - CCNA_00776 0.12 +0.2
832,159 - CCNA_00776 0.13 -0.2
832,168 + CCNA_00776 0.14 -0.5
832,168 + CCNA_00776 0.14 -0.4
832,178 + CCNA_00776 0.14 +0.3
832,178 + CCNA_00776 0.14 +0.3
832,178 + CCNA_00776 0.14 -1.3
832,178 + CCNA_00776 0.14 +0.1
832,186 - CCNA_00776 0.14 -0.6
832,186 - CCNA_00776 0.14 +0.1
832,204 - CCNA_00776 0.15 -0.7
832,300 + CCNA_00776 0.17 -0.4
832,327 - CCNA_00776 0.18 +0.1
832,338 - CCNA_00776 0.18 +0.0
832,362 - CCNA_00776 0.19 +1.9
832,403 + CCNA_00776 0.20 -0.2
832,411 - CCNA_00776 0.20 -0.3
832,417 - CCNA_00776 0.21 +1.7
832,431 + CCNA_00776 0.21 +1.5
832,431 + CCNA_00776 0.21 -0.4
832,439 - CCNA_00776 0.21 -0.1
832,439 - CCNA_00776 0.21 -0.6
832,460 - CCNA_00776 0.22 -0.5
832,470 + CCNA_00776 0.22 -0.9
832,472 + CCNA_00776 0.22 +0.2
832,514 + CCNA_00776 0.23 -3.0
832,514 + CCNA_00776 0.23 -1.0
832,522 - CCNA_00776 0.23 -0.8
832,583 + CCNA_00776 0.25 -0.9
832,583 + CCNA_00776 0.25 +0.3
832,591 - CCNA_00776 0.25 -0.5

Or see this region's nucleotide sequence