Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00557

Experiment: PYE with CHIR-090 10 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00556 and CCNA_00557 overlap by 44 nucleotidesCCNA_00557 and CCNA_00558 overlap by 4 nucleotidesCCNA_00558 and CCNA_00559 are separated by 127 nucleotides CCNA_00556: CCNA_00556 - phospholipase D, at 571,546 to 573,063 _00556 CCNA_00557: CCNA_00557 - endonuclease/exonuclease/phosphatase family protein, at 573,020 to 573,799 _00557 CCNA_00558: CCNA_00558 - methyltransferase, at 573,796 to 574,461 _00558 CCNA_00559: CCNA_00559 - homoserine O-acetyltransferase, at 574,589 to 575,737 _00559 Position (kb) 573 574Strain fitness (log2 ratio) -2 -1 0 1 2at 572.024 kb on + strand, within CCNA_00556at 572.024 kb on + strand, within CCNA_00556at 572.039 kb on + strand, within CCNA_00556at 572.052 kb on + strand, within CCNA_00556at 572.086 kb on + strand, within CCNA_00556at 572.091 kb on + strand, within CCNA_00556at 572.091 kb on + strand, within CCNA_00556at 572.091 kb on + strand, within CCNA_00556at 572.099 kb on - strand, within CCNA_00556at 572.099 kb on - strand, within CCNA_00556at 572.099 kb on - strand, within CCNA_00556at 572.099 kb on - strand, within CCNA_00556at 572.099 kb on - strand, within CCNA_00556at 572.099 kb on - strand, within CCNA_00556at 572.099 kb on - strand, within CCNA_00556at 572.113 kb on + strand, within CCNA_00556at 572.148 kb on - strand, within CCNA_00556at 572.221 kb on - strand, within CCNA_00556at 572.221 kb on - strand, within CCNA_00556at 572.322 kb on + strand, within CCNA_00556at 572.329 kb on + strand, within CCNA_00556at 572.331 kb on + strand, within CCNA_00556at 572.354 kb on + strand, within CCNA_00556at 572.413 kb on + strand, within CCNA_00556at 572.424 kb on + strand, within CCNA_00556at 572.444 kb on + strand, within CCNA_00556at 572.459 kb on - strand, within CCNA_00556at 572.500 kb on + strand, within CCNA_00556at 572.500 kb on + strand, within CCNA_00556at 572.500 kb on + strand, within CCNA_00556at 572.500 kb on + strand, within CCNA_00556at 572.508 kb on - strand, within CCNA_00556at 572.538 kb on + strand, within CCNA_00556at 572.546 kb on - strand, within CCNA_00556at 572.586 kb on + strand, within CCNA_00556at 572.586 kb on + strand, within CCNA_00556at 572.586 kb on + strand, within CCNA_00556at 572.591 kb on + strand, within CCNA_00556at 572.594 kb on - strand, within CCNA_00556at 572.612 kb on + strand, within CCNA_00556at 572.620 kb on - strand, within CCNA_00556at 572.633 kb on + strand, within CCNA_00556at 572.665 kb on + strand, within CCNA_00556at 572.683 kb on + strand, within CCNA_00556at 572.725 kb on + strand, within CCNA_00556at 572.725 kb on + strand, within CCNA_00556at 572.733 kb on - strand, within CCNA_00556at 572.733 kb on - strand, within CCNA_00556at 572.902 kb on + strand, within CCNA_00556at 572.905 kb on - strand, within CCNA_00556at 572.905 kb on - strand, within CCNA_00556at 572.933 kb on + strandat 572.940 kb on - strandat 572.988 kb on + strandat 573.083 kb on + strandat 573.085 kb on - strandat 573.143 kb on + strand, within CCNA_00557at 573.164 kb on + strand, within CCNA_00557at 573.172 kb on - strand, within CCNA_00557at 573.205 kb on - strand, within CCNA_00557at 573.227 kb on + strand, within CCNA_00557at 573.276 kb on - strand, within CCNA_00557at 573.297 kb on + strand, within CCNA_00557at 573.329 kb on + strand, within CCNA_00557at 573.337 kb on - strand, within CCNA_00557at 573.337 kb on - strand, within CCNA_00557at 573.338 kb on - strand, within CCNA_00557at 573.338 kb on - strand, within CCNA_00557at 573.338 kb on - strand, within CCNA_00557at 573.374 kb on + strand, within CCNA_00557at 573.404 kb on + strand, within CCNA_00557at 573.405 kb on - strand, within CCNA_00557at 573.430 kb on - strand, within CCNA_00557at 573.431 kb on - strand, within CCNA_00557at 573.438 kb on - strand, within CCNA_00557at 573.475 kb on + strand, within CCNA_00557at 573.475 kb on + strand, within CCNA_00557at 573.475 kb on + strand, within CCNA_00557at 573.475 kb on + strand, within CCNA_00557at 573.483 kb on - strand, within CCNA_00557at 573.483 kb on - strand, within CCNA_00557at 573.483 kb on - strand, within CCNA_00557at 573.483 kb on - strand, within CCNA_00557at 573.492 kb on + strand, within CCNA_00557at 573.509 kb on + strand, within CCNA_00557at 573.509 kb on + strand, within CCNA_00557at 573.509 kb on + strand, within CCNA_00557at 573.509 kb on + strand, within CCNA_00557at 573.517 kb on - strand, within CCNA_00557at 573.565 kb on + strand, within CCNA_00557at 573.566 kb on - strand, within CCNA_00557at 573.566 kb on - strand, within CCNA_00557at 573.566 kb on - strand, within CCNA_00557at 573.566 kb on - strand, within CCNA_00557at 573.627 kb on - strand, within CCNA_00557at 573.629 kb on - strand, within CCNA_00557at 573.635 kb on - strand, within CCNA_00557at 573.667 kb on + strand, within CCNA_00557at 573.691 kb on + strand, within CCNA_00557at 573.746 kb on - strandat 573.746 kb on - strandat 573.759 kb on + strandat 573.761 kb on + strandat 573.768 kb on + strandat 573.769 kb on - strandat 573.774 kb on - strandat 573.777 kb on - strandat 573.810 kb on - strandat 573.839 kb on - strandat 573.863 kb on + strand, within CCNA_00558at 573.885 kb on - strand, within CCNA_00558at 573.935 kb on + strand, within CCNA_00558at 573.975 kb on + strand, within CCNA_00558at 573.998 kb on - strand, within CCNA_00558at 574.026 kb on + strand, within CCNA_00558at 574.039 kb on + strand, within CCNA_00558at 574.057 kb on + strand, within CCNA_00558at 574.078 kb on + strand, within CCNA_00558at 574.078 kb on + strand, within CCNA_00558at 574.078 kb on + strand, within CCNA_00558at 574.078 kb on + strand, within CCNA_00558at 574.078 kb on + strand, within CCNA_00558at 574.086 kb on - strand, within CCNA_00558at 574.086 kb on - strand, within CCNA_00558at 574.086 kb on - strand, within CCNA_00558at 574.166 kb on - strand, within CCNA_00558at 574.182 kb on - strand, within CCNA_00558at 574.196 kb on + strand, within CCNA_00558at 574.196 kb on + strand, within CCNA_00558at 574.196 kb on + strand, within CCNA_00558at 574.196 kb on + strand, within CCNA_00558at 574.196 kb on + strand, within CCNA_00558at 574.196 kb on + strand, within CCNA_00558at 574.196 kb on + strand, within CCNA_00558at 574.196 kb on + strand, within CCNA_00558at 574.201 kb on + strand, within CCNA_00558at 574.204 kb on - strand, within CCNA_00558at 574.204 kb on - strand, within CCNA_00558at 574.256 kb on + strand, within CCNA_00558at 574.259 kb on - strand, within CCNA_00558at 574.264 kb on + strand, within CCNA_00558at 574.286 kb on - strand, within CCNA_00558at 574.286 kb on - strand, within CCNA_00558at 574.287 kb on + strand, within CCNA_00558at 574.317 kb on + strand, within CCNA_00558at 574.414 kb on - strandat 574.454 kb on - strandat 574.464 kb on - strandat 574.472 kb on + strandat 574.501 kb on - strandat 574.564 kb on + strandat 574.566 kb on + strandat 574.569 kb on - strandat 574.608 kb on + strandat 574.622 kb on - strandat 574.733 kb on + strand, within CCNA_00559at 574.747 kb on - strand, within CCNA_00559at 574.773 kb on - strand, within CCNA_00559at 574.773 kb on - strand, within CCNA_00559at 574.794 kb on + strand, within CCNA_00559

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL
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572,024 + CCNA_00556 0.31 +0.3
572,024 + CCNA_00556 0.31 +0.5
572,039 + CCNA_00556 0.32 +1.0
572,052 + CCNA_00556 0.33 +0.4
572,086 + CCNA_00556 0.36 -0.1
572,091 + CCNA_00556 0.36 +0.2
572,091 + CCNA_00556 0.36 +0.4
572,091 + CCNA_00556 0.36 -0.4
572,099 - CCNA_00556 0.36 -0.2
572,099 - CCNA_00556 0.36 +0.8
572,099 - CCNA_00556 0.36 -0.4
572,099 - CCNA_00556 0.36 +0.7
572,099 - CCNA_00556 0.36 -1.1
572,099 - CCNA_00556 0.36 -2.0
572,099 - CCNA_00556 0.36 -0.7
572,113 + CCNA_00556 0.37 -0.3
572,148 - CCNA_00556 0.40 -0.7
572,221 - CCNA_00556 0.44 -0.3
572,221 - CCNA_00556 0.44 +1.0
572,322 + CCNA_00556 0.51 +0.4
572,329 + CCNA_00556 0.52 +0.2
572,331 + CCNA_00556 0.52 -0.0
572,354 + CCNA_00556 0.53 -0.2
572,413 + CCNA_00556 0.57 -2.0
572,424 + CCNA_00556 0.58 -0.0
572,444 + CCNA_00556 0.59 -1.3
572,459 - CCNA_00556 0.60 -0.3
572,500 + CCNA_00556 0.63 +0.4
572,500 + CCNA_00556 0.63 +0.3
572,500 + CCNA_00556 0.63 -0.0
572,500 + CCNA_00556 0.63 -0.6
572,508 - CCNA_00556 0.63 +0.2
572,538 + CCNA_00556 0.65 +0.5
572,546 - CCNA_00556 0.66 +0.1
572,586 + CCNA_00556 0.69 -0.0
572,586 + CCNA_00556 0.69 +0.0
572,586 + CCNA_00556 0.69 -2.0
572,591 + CCNA_00556 0.69 +0.2
572,594 - CCNA_00556 0.69 +0.1
572,612 + CCNA_00556 0.70 -0.8
572,620 - CCNA_00556 0.71 -0.3
572,633 + CCNA_00556 0.72 -0.3
572,665 + CCNA_00556 0.74 -2.1
572,683 + CCNA_00556 0.75 +0.4
572,725 + CCNA_00556 0.78 -0.4
572,725 + CCNA_00556 0.78 -0.5
572,733 - CCNA_00556 0.78 +0.6
572,733 - CCNA_00556 0.78 -0.3
572,902 + CCNA_00556 0.89 -0.0
572,905 - CCNA_00556 0.90 -0.2
572,905 - CCNA_00556 0.90 -0.3
572,933 + -0.1
572,940 - -0.2
572,988 + +0.0
573,083 + -0.2
573,085 - -0.3
573,143 + CCNA_00557 0.16 +0.3
573,164 + CCNA_00557 0.18 -0.8
573,172 - CCNA_00557 0.19 -0.5
573,205 - CCNA_00557 0.24 +0.8
573,227 + CCNA_00557 0.27 -1.0
573,276 - CCNA_00557 0.33 -1.8
573,297 + CCNA_00557 0.36 -0.0
573,329 + CCNA_00557 0.40 +0.3
573,337 - CCNA_00557 0.41 -0.6
573,337 - CCNA_00557 0.41 +0.9
573,338 - CCNA_00557 0.41 -0.0
573,338 - CCNA_00557 0.41 +1.6
573,338 - CCNA_00557 0.41 +0.8
573,374 + CCNA_00557 0.45 +0.2
573,404 + CCNA_00557 0.49 -1.0
573,405 - CCNA_00557 0.49 +0.0
573,430 - CCNA_00557 0.53 +0.0
573,431 - CCNA_00557 0.53 +0.6
573,438 - CCNA_00557 0.54 +1.0
573,475 + CCNA_00557 0.58 +0.4
573,475 + CCNA_00557 0.58 -0.8
573,475 + CCNA_00557 0.58 -0.0
573,475 + CCNA_00557 0.58 -0.8
573,483 - CCNA_00557 0.59 +0.3
573,483 - CCNA_00557 0.59 +0.7
573,483 - CCNA_00557 0.59 -1.6
573,483 - CCNA_00557 0.59 -0.7
573,492 + CCNA_00557 0.61 -1.6
573,509 + CCNA_00557 0.63 -0.4
573,509 + CCNA_00557 0.63 -0.7
573,509 + CCNA_00557 0.63 +1.0
573,509 + CCNA_00557 0.63 -0.9
573,517 - CCNA_00557 0.64 +0.2
573,565 + CCNA_00557 0.70 -0.2
573,566 - CCNA_00557 0.70 +0.7
573,566 - CCNA_00557 0.70 -0.5
573,566 - CCNA_00557 0.70 +0.5
573,566 - CCNA_00557 0.70 +0.4
573,627 - CCNA_00557 0.78 +0.0
573,629 - CCNA_00557 0.78 -0.4
573,635 - CCNA_00557 0.79 -0.1
573,667 + CCNA_00557 0.83 -1.5
573,691 + CCNA_00557 0.86 -0.9
573,746 - +0.0
573,746 - +0.1
573,759 + -0.3
573,761 + -0.4
573,768 + -1.2
573,769 - +0.2
573,774 - +1.8
573,777 - -0.2
573,810 - +0.8
573,839 - +0.6
573,863 + CCNA_00558 0.10 -0.1
573,885 - CCNA_00558 0.13 +0.5
573,935 + CCNA_00558 0.21 -0.2
573,975 + CCNA_00558 0.27 +1.6
573,998 - CCNA_00558 0.30 +0.2
574,026 + CCNA_00558 0.35 +0.4
574,039 + CCNA_00558 0.36 +0.0
574,057 + CCNA_00558 0.39 +0.6
574,078 + CCNA_00558 0.42 -0.6
574,078 + CCNA_00558 0.42 +0.1
574,078 + CCNA_00558 0.42 +0.8
574,078 + CCNA_00558 0.42 +0.3
574,078 + CCNA_00558 0.42 +0.4
574,086 - CCNA_00558 0.44 -0.5
574,086 - CCNA_00558 0.44 -0.5
574,086 - CCNA_00558 0.44 +0.1
574,166 - CCNA_00558 0.56 +0.1
574,182 - CCNA_00558 0.58 +0.9
574,196 + CCNA_00558 0.60 -0.4
574,196 + CCNA_00558 0.60 -0.4
574,196 + CCNA_00558 0.60 +0.4
574,196 + CCNA_00558 0.60 +0.9
574,196 + CCNA_00558 0.60 -1.2
574,196 + CCNA_00558 0.60 -0.4
574,196 + CCNA_00558 0.60 +1.3
574,196 + CCNA_00558 0.60 -0.2
574,201 + CCNA_00558 0.61 +2.4
574,204 - CCNA_00558 0.61 +0.3
574,204 - CCNA_00558 0.61 +0.3
574,256 + CCNA_00558 0.69 -1.1
574,259 - CCNA_00558 0.70 +0.2
574,264 + CCNA_00558 0.70 -0.9
574,286 - CCNA_00558 0.74 -0.4
574,286 - CCNA_00558 0.74 -0.0
574,287 + CCNA_00558 0.74 +0.2
574,317 + CCNA_00558 0.78 -0.2
574,414 - +0.4
574,454 - +0.0
574,464 - +0.8
574,472 + +0.3
574,501 - -0.0
574,564 + -0.6
574,566 + -0.1
574,569 - -0.0
574,608 + -1.3
574,622 - +0.7
574,733 + CCNA_00559 0.13 -1.0
574,747 - CCNA_00559 0.14 +0.2
574,773 - CCNA_00559 0.16 +0.5
574,773 - CCNA_00559 0.16 -0.5
574,794 + CCNA_00559 0.18 -1.0

Or see this region's nucleotide sequence