Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00176

Experiment: PYE with CHIR-090 10 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00174 and CCNA_00175 are separated by 11 nucleotidesCCNA_00175 and CCNA_00176 overlap by 86 nucleotidesCCNA_00176 and CCNA_00177 overlap by 32 nucleotidesCCNA_00177 and CCNA_00178 overlap by 4 nucleotidesCCNA_00178 and CCNA_00179 overlap by 4 nucleotides CCNA_00174: CCNA_00174 - type II secretion pathway protein F, at 189,809 to 191,020 _00174 CCNA_00175: CCNA_00175 - type II secretion pathway protein G, at 191,032 to 191,484 _00175 CCNA_00176: CCNA_00176 - type II secretion pathway protein H, at 191,399 to 191,956 _00176 CCNA_00177: CCNA_00177 - type II secretion pathway protein I, at 191,925 to 192,308 _00177 CCNA_00178: CCNA_00178 - type II secretion pathway protein J, at 192,305 to 192,895 _00178 CCNA_00179: CCNA_00179 - type II secretion pathway protein K, at 192,892 to 193,866 _00179 Position (kb) 191 192Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 190.424 kb on + strand, within CCNA_00174at 190.450 kb on + strand, within CCNA_00174at 190.466 kb on + strand, within CCNA_00174at 190.475 kb on - strand, within CCNA_00174at 190.513 kb on - strand, within CCNA_00174at 190.513 kb on - strand, within CCNA_00174at 190.522 kb on - strand, within CCNA_00174at 190.597 kb on - strand, within CCNA_00174at 190.611 kb on - strand, within CCNA_00174at 190.616 kb on + strand, within CCNA_00174at 190.624 kb on - strand, within CCNA_00174at 190.629 kb on - strand, within CCNA_00174at 190.631 kb on - strand, within CCNA_00174at 190.670 kb on + strand, within CCNA_00174at 190.671 kb on + strand, within CCNA_00174at 190.671 kb on + strand, within CCNA_00174at 190.671 kb on - strand, within CCNA_00174at 190.679 kb on - strand, within CCNA_00174at 190.696 kb on + strand, within CCNA_00174at 190.702 kb on - strand, within CCNA_00174at 190.704 kb on - strand, within CCNA_00174at 190.708 kb on + strand, within CCNA_00174at 190.714 kb on - strand, within CCNA_00174at 190.770 kb on - strand, within CCNA_00174at 190.779 kb on + strand, within CCNA_00174at 190.787 kb on - strand, within CCNA_00174at 190.831 kb on - strand, within CCNA_00174at 190.848 kb on - strand, within CCNA_00174at 190.848 kb on - strand, within CCNA_00174at 190.909 kb on + strandat 190.970 kb on - strandat 191.004 kb on + strandat 191.009 kb on + strandat 191.040 kb on + strandat 191.081 kb on + strand, within CCNA_00175at 191.081 kb on + strand, within CCNA_00175at 191.089 kb on - strand, within CCNA_00175at 191.089 kb on - strand, within CCNA_00175at 191.089 kb on - strand, within CCNA_00175at 191.099 kb on - strand, within CCNA_00175at 191.125 kb on - strand, within CCNA_00175at 191.181 kb on + strand, within CCNA_00175at 191.189 kb on - strand, within CCNA_00175at 191.253 kb on + strand, within CCNA_00175at 191.261 kb on - strand, within CCNA_00175at 191.268 kb on + strand, within CCNA_00175at 191.300 kb on + strand, within CCNA_00175at 191.300 kb on + strand, within CCNA_00175at 191.300 kb on + strand, within CCNA_00175at 191.307 kb on - strand, within CCNA_00175at 191.312 kb on - strand, within CCNA_00175at 191.312 kb on - strand, within CCNA_00175at 191.349 kb on + strand, within CCNA_00175at 191.357 kb on - strand, within CCNA_00175at 191.374 kb on + strand, within CCNA_00175at 191.376 kb on + strand, within CCNA_00175at 191.379 kb on + strand, within CCNA_00175at 191.452 kb on + strandat 191.485 kb on + strand, within CCNA_00176at 191.493 kb on - strand, within CCNA_00176at 191.493 kb on - strand, within CCNA_00176at 191.494 kb on + strand, within CCNA_00176at 191.502 kb on - strand, within CCNA_00176at 191.513 kb on + strand, within CCNA_00176at 191.518 kb on + strand, within CCNA_00176at 191.523 kb on + strand, within CCNA_00176at 191.531 kb on - strand, within CCNA_00176at 191.539 kb on + strand, within CCNA_00176at 191.539 kb on + strand, within CCNA_00176at 191.540 kb on - strand, within CCNA_00176at 191.547 kb on - strand, within CCNA_00176at 191.567 kb on + strand, within CCNA_00176at 191.567 kb on - strand, within CCNA_00176at 191.579 kb on + strand, within CCNA_00176at 191.584 kb on + strand, within CCNA_00176at 191.586 kb on + strand, within CCNA_00176at 191.586 kb on + strand, within CCNA_00176at 191.586 kb on + strand, within CCNA_00176at 191.592 kb on - strand, within CCNA_00176at 191.592 kb on - strand, within CCNA_00176at 191.592 kb on - strand, within CCNA_00176at 191.592 kb on - strand, within CCNA_00176at 191.592 kb on - strand, within CCNA_00176at 191.626 kb on - strand, within CCNA_00176at 191.645 kb on + strand, within CCNA_00176at 191.695 kb on + strand, within CCNA_00176at 191.753 kb on + strand, within CCNA_00176at 191.761 kb on - strand, within CCNA_00176at 191.761 kb on - strand, within CCNA_00176at 191.788 kb on + strand, within CCNA_00176at 191.828 kb on - strand, within CCNA_00176at 191.828 kb on - strand, within CCNA_00176at 191.880 kb on + strand, within CCNA_00176at 191.888 kb on + strand, within CCNA_00176at 191.962 kb on + strandat 191.969 kb on - strand, within CCNA_00177at 191.984 kb on + strand, within CCNA_00177at 192.007 kb on - strand, within CCNA_00177at 192.020 kb on - strand, within CCNA_00177at 192.023 kb on + strand, within CCNA_00177at 192.023 kb on + strand, within CCNA_00177at 192.070 kb on + strand, within CCNA_00177at 192.090 kb on + strand, within CCNA_00177at 192.098 kb on - strand, within CCNA_00177at 192.108 kb on + strand, within CCNA_00177at 192.138 kb on + strand, within CCNA_00177at 192.146 kb on - strand, within CCNA_00177at 192.146 kb on - strand, within CCNA_00177at 192.195 kb on + strand, within CCNA_00177at 192.200 kb on + strand, within CCNA_00177at 192.203 kb on - strand, within CCNA_00177at 192.243 kb on + strand, within CCNA_00177at 192.251 kb on - strand, within CCNA_00177at 192.252 kb on - strand, within CCNA_00177at 192.290 kb on + strandat 192.290 kb on + strandat 192.290 kb on + strandat 192.290 kb on + strandat 192.290 kb on + strandat 192.290 kb on + strandat 192.290 kb on + strandat 192.290 kb on + strandat 192.290 kb on + strandat 192.298 kb on - strandat 192.312 kb on + strandat 192.312 kb on + strandat 192.312 kb on + strandat 192.312 kb on + strandat 192.320 kb on - strandat 192.330 kb on - strandat 192.356 kb on - strandat 192.358 kb on + strandat 192.358 kb on + strandat 192.366 kb on - strand, within CCNA_00178at 192.366 kb on - strand, within CCNA_00178at 192.387 kb on + strand, within CCNA_00178at 192.387 kb on + strand, within CCNA_00178at 192.387 kb on + strand, within CCNA_00178at 192.395 kb on - strand, within CCNA_00178at 192.426 kb on - strand, within CCNA_00178at 192.570 kb on - strand, within CCNA_00178at 192.579 kb on + strand, within CCNA_00178at 192.579 kb on + strand, within CCNA_00178at 192.587 kb on - strand, within CCNA_00178at 192.594 kb on + strand, within CCNA_00178at 192.594 kb on + strand, within CCNA_00178at 192.621 kb on - strand, within CCNA_00178at 192.642 kb on + strand, within CCNA_00178at 192.650 kb on - strand, within CCNA_00178at 192.680 kb on + strand, within CCNA_00178at 192.686 kb on + strand, within CCNA_00178at 192.694 kb on - strand, within CCNA_00178at 192.696 kb on + strand, within CCNA_00178at 192.703 kb on + strand, within CCNA_00178at 192.719 kb on + strand, within CCNA_00178at 192.768 kb on + strand, within CCNA_00178at 192.768 kb on + strand, within CCNA_00178at 192.784 kb on - strand, within CCNA_00178at 192.804 kb on - strand, within CCNA_00178at 192.817 kb on - strand, within CCNA_00178at 192.819 kb on - strand, within CCNA_00178at 192.831 kb on + strand, within CCNA_00178at 192.873 kb on - strandat 192.876 kb on + strandat 192.876 kb on + strandat 192.876 kb on + strandat 192.895 kb on - strandat 192.919 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL
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190,424 + CCNA_00174 0.51 -0.3
190,450 + CCNA_00174 0.53 +0.8
190,466 + CCNA_00174 0.54 +0.1
190,475 - CCNA_00174 0.55 +0.7
190,513 - CCNA_00174 0.58 +0.7
190,513 - CCNA_00174 0.58 -0.2
190,522 - CCNA_00174 0.59 -1.4
190,597 - CCNA_00174 0.65 -2.4
190,611 - CCNA_00174 0.66 -0.5
190,616 + CCNA_00174 0.67 +0.1
190,624 - CCNA_00174 0.67 -0.3
190,629 - CCNA_00174 0.68 -0.5
190,631 - CCNA_00174 0.68 -1.8
190,670 + CCNA_00174 0.71 +0.7
190,671 + CCNA_00174 0.71 +0.4
190,671 + CCNA_00174 0.71 -0.5
190,671 - CCNA_00174 0.71 -3.0
190,679 - CCNA_00174 0.72 -0.1
190,696 + CCNA_00174 0.73 +0.1
190,702 - CCNA_00174 0.74 -0.0
190,704 - CCNA_00174 0.74 -0.1
190,708 + CCNA_00174 0.74 +0.9
190,714 - CCNA_00174 0.75 -0.1
190,770 - CCNA_00174 0.79 -1.0
190,779 + CCNA_00174 0.80 -0.1
190,787 - CCNA_00174 0.81 -1.4
190,831 - CCNA_00174 0.84 -0.1
190,848 - CCNA_00174 0.86 -0.1
190,848 - CCNA_00174 0.86 +1.3
190,909 + +0.3
190,970 - -0.4
191,004 + -1.2
191,009 + -1.6
191,040 + -0.4
191,081 + CCNA_00175 0.11 -0.6
191,081 + CCNA_00175 0.11 -0.2
191,089 - CCNA_00175 0.13 +0.1
191,089 - CCNA_00175 0.13 -0.7
191,089 - CCNA_00175 0.13 +0.3
191,099 - CCNA_00175 0.15 -0.3
191,125 - CCNA_00175 0.21 -0.6
191,181 + CCNA_00175 0.33 -0.2
191,189 - CCNA_00175 0.35 -0.3
191,253 + CCNA_00175 0.49 +0.9
191,261 - CCNA_00175 0.51 -1.7
191,268 + CCNA_00175 0.52 -0.6
191,300 + CCNA_00175 0.59 -2.4
191,300 + CCNA_00175 0.59 +0.3
191,300 + CCNA_00175 0.59 -0.2
191,307 - CCNA_00175 0.61 +0.1
191,312 - CCNA_00175 0.62 +0.6
191,312 - CCNA_00175 0.62 +0.4
191,349 + CCNA_00175 0.70 +0.2
191,357 - CCNA_00175 0.72 +0.1
191,374 + CCNA_00175 0.75 -0.9
191,376 + CCNA_00175 0.76 -0.0
191,379 + CCNA_00175 0.77 -0.7
191,452 + +1.5
191,485 + CCNA_00176 0.15 -0.3
191,493 - CCNA_00176 0.17 -1.2
191,493 - CCNA_00176 0.17 -1.9
191,494 + CCNA_00176 0.17 +0.2
191,502 - CCNA_00176 0.18 -0.7
191,513 + CCNA_00176 0.20 +1.9
191,518 + CCNA_00176 0.21 +1.8
191,523 + CCNA_00176 0.22 +1.0
191,531 - CCNA_00176 0.24 -1.4
191,539 + CCNA_00176 0.25 +0.2
191,539 + CCNA_00176 0.25 -0.1
191,540 - CCNA_00176 0.25 +0.5
191,547 - CCNA_00176 0.27 -1.8
191,567 + CCNA_00176 0.30 +0.2
191,567 - CCNA_00176 0.30 -0.5
191,579 + CCNA_00176 0.32 +0.5
191,584 + CCNA_00176 0.33 -0.2
191,586 + CCNA_00176 0.34 -1.1
191,586 + CCNA_00176 0.34 -1.1
191,586 + CCNA_00176 0.34 +0.8
191,592 - CCNA_00176 0.35 -1.6
191,592 - CCNA_00176 0.35 -1.0
191,592 - CCNA_00176 0.35 -1.2
191,592 - CCNA_00176 0.35 -0.0
191,592 - CCNA_00176 0.35 -0.8
191,626 - CCNA_00176 0.41 -0.0
191,645 + CCNA_00176 0.44 -0.3
191,695 + CCNA_00176 0.53 -0.7
191,753 + CCNA_00176 0.63 +0.2
191,761 - CCNA_00176 0.65 -1.6
191,761 - CCNA_00176 0.65 -0.0
191,788 + CCNA_00176 0.70 -1.0
191,828 - CCNA_00176 0.77 +0.5
191,828 - CCNA_00176 0.77 -0.4
191,880 + CCNA_00176 0.86 +0.4
191,888 + CCNA_00176 0.88 -1.0
191,962 + -0.7
191,969 - CCNA_00177 0.11 -1.1
191,984 + CCNA_00177 0.15 -0.1
192,007 - CCNA_00177 0.21 -0.5
192,020 - CCNA_00177 0.25 +0.4
192,023 + CCNA_00177 0.26 +1.0
192,023 + CCNA_00177 0.26 -0.0
192,070 + CCNA_00177 0.38 -0.4
192,090 + CCNA_00177 0.43 +0.4
192,098 - CCNA_00177 0.45 -0.7
192,108 + CCNA_00177 0.48 -0.1
192,138 + CCNA_00177 0.55 -1.0
192,146 - CCNA_00177 0.58 -0.2
192,146 - CCNA_00177 0.58 +1.9
192,195 + CCNA_00177 0.70 -0.2
192,200 + CCNA_00177 0.72 +0.7
192,203 - CCNA_00177 0.72 -0.5
192,243 + CCNA_00177 0.83 +0.7
192,251 - CCNA_00177 0.85 -0.5
192,252 - CCNA_00177 0.85 +0.7
192,290 + -0.3
192,290 + +0.2
192,290 + +0.5
192,290 + -0.7
192,290 + -0.2
192,290 + -1.9
192,290 + -0.4
192,290 + -1.2
192,290 + +0.1
192,298 - -0.5
192,312 + +0.7
192,312 + +2.1
192,312 + +1.9
192,312 + -0.6
192,320 - +0.3
192,330 - -0.4
192,356 - -0.1
192,358 + +2.1
192,358 + -0.0
192,366 - CCNA_00178 0.10 -0.3
192,366 - CCNA_00178 0.10 +0.0
192,387 + CCNA_00178 0.14 +0.7
192,387 + CCNA_00178 0.14 +0.7
192,387 + CCNA_00178 0.14 +0.2
192,395 - CCNA_00178 0.15 -0.2
192,426 - CCNA_00178 0.20 -0.8
192,570 - CCNA_00178 0.45 +0.1
192,579 + CCNA_00178 0.46 -0.4
192,579 + CCNA_00178 0.46 -0.3
192,587 - CCNA_00178 0.48 +0.1
192,594 + CCNA_00178 0.49 -0.0
192,594 + CCNA_00178 0.49 -0.9
192,621 - CCNA_00178 0.53 +0.2
192,642 + CCNA_00178 0.57 -2.3
192,650 - CCNA_00178 0.58 -0.6
192,680 + CCNA_00178 0.63 +0.0
192,686 + CCNA_00178 0.64 -1.4
192,694 - CCNA_00178 0.66 -0.5
192,696 + CCNA_00178 0.66 -0.6
192,703 + CCNA_00178 0.67 -0.1
192,719 + CCNA_00178 0.70 -0.9
192,768 + CCNA_00178 0.78 +0.4
192,768 + CCNA_00178 0.78 -0.6
192,784 - CCNA_00178 0.81 -0.3
192,804 - CCNA_00178 0.84 -0.9
192,817 - CCNA_00178 0.87 -0.2
192,819 - CCNA_00178 0.87 +0.8
192,831 + CCNA_00178 0.89 +0.2
192,873 - -1.0
192,876 + -0.4
192,876 + +0.5
192,876 + -1.7
192,895 - -0.6
192,919 + -1.4

Or see this region's nucleotide sequence