Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00049

Experiment: PYE with CHIR-090 10 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00048 and CCNA_00049 are separated by 119 nucleotidesCCNA_00049 and CCNA_00050 are separated by 27 nucleotides CCNA_00048: CCNA_00048 - S-adenosylmethionine synthetase, at 50,902 to 52,125 _00048 CCNA_00049: CCNA_00049 - HTH transcriptional regulator, at 52,245 to 52,679 _00049 CCNA_00050: CCNA_00050 - apolipoprotein N-acyltransferase, at 52,707 to 54,299 _00050 Position (kb) 52 53Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 52.230 kb on - strandat 52.251 kb on - strandat 52.258 kb on - strandat 52.324 kb on + strand, within CCNA_00049at 52.331 kb on + strand, within CCNA_00049at 52.331 kb on + strand, within CCNA_00049at 52.331 kb on + strand, within CCNA_00049at 52.393 kb on + strand, within CCNA_00049at 52.393 kb on + strand, within CCNA_00049at 52.430 kb on + strand, within CCNA_00049at 52.430 kb on + strand, within CCNA_00049at 52.430 kb on + strand, within CCNA_00049at 52.438 kb on - strand, within CCNA_00049at 52.469 kb on + strand, within CCNA_00049at 52.554 kb on - strand, within CCNA_00049at 52.577 kb on + strand, within CCNA_00049at 52.636 kb on + strandat 52.636 kb on + strandat 52.644 kb on - strandat 52.753 kb on + strandat 52.775 kb on + strandat 53.088 kb on - strand, within CCNA_00050at 53.637 kb on - strand, within CCNA_00050

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL
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52,230 - -0.3
52,251 - -0.3
52,258 - -1.5
52,324 + CCNA_00049 0.18 -1.4
52,331 + CCNA_00049 0.20 -0.3
52,331 + CCNA_00049 0.20 -1.6
52,331 + CCNA_00049 0.20 -0.2
52,393 + CCNA_00049 0.34 +0.5
52,393 + CCNA_00049 0.34 +0.7
52,430 + CCNA_00049 0.43 -0.5
52,430 + CCNA_00049 0.43 -2.8
52,430 + CCNA_00049 0.43 -1.2
52,438 - CCNA_00049 0.44 -0.3
52,469 + CCNA_00049 0.51 +2.8
52,554 - CCNA_00049 0.71 +0.3
52,577 + CCNA_00049 0.76 -1.1
52,636 + +1.1
52,636 + -1.9
52,644 - -0.1
52,753 + +0.1
52,775 + -0.3
53,088 - CCNA_00050 0.24 +0.1
53,637 - CCNA_00050 0.58 -0.7

Or see this region's nucleotide sequence