Experiment: PYE with CHIR-090 10 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00001 and CCNA_00002 overlap by 4 nucleotides CCNA_00002 and CCNA_00003 overlap by 4 nucleotides
CCNA_00001: CCNA_00001 - ATP/GTP-binding protein, at 202 to 1,107
_00001
CCNA_00002: CCNA_00002 - septum formation protein Maf, at 1,104 to 1,703
_00002
CCNA_00003: CCNA_00003 - shikimate 5-dehydrogenase, at 1,700 to 2,557
_00003
Position (kb)
0
1
2 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 0.032 kb on + strand at 0.239 kb on + strand at 0.242 kb on - strand at 0.247 kb on - strand at 0.247 kb on - strand at 0.257 kb on - strand at 0.258 kb on - strand at 0.265 kb on - strand at 0.276 kb on - strand at 0.312 kb on + strand, within CCNA_00001 at 0.322 kb on - strand, within CCNA_00001 at 0.382 kb on + strand, within CCNA_00001 at 0.387 kb on + strand, within CCNA_00001 at 0.387 kb on + strand, within CCNA_00001 at 0.389 kb on + strand, within CCNA_00001 at 0.397 kb on - strand, within CCNA_00001 at 0.399 kb on + strand, within CCNA_00001 at 0.400 kb on - strand, within CCNA_00001 at 0.436 kb on - strand, within CCNA_00001 at 0.468 kb on - strand, within CCNA_00001 at 0.496 kb on + strand, within CCNA_00001 at 0.505 kb on - strand, within CCNA_00001 at 0.512 kb on + strand, within CCNA_00001 at 0.607 kb on + strand, within CCNA_00001 at 0.627 kb on + strand, within CCNA_00001 at 0.649 kb on + strand, within CCNA_00001 at 0.649 kb on + strand, within CCNA_00001 at 0.649 kb on + strand, within CCNA_00001 at 0.649 kb on + strand, within CCNA_00001 at 0.650 kb on + strand, within CCNA_00001 at 0.654 kb on + strand, within CCNA_00001 at 0.657 kb on - strand, within CCNA_00001 at 0.657 kb on - strand, within CCNA_00001 at 0.663 kb on - strand, within CCNA_00001 at 0.687 kb on - strand, within CCNA_00001 at 0.688 kb on + strand, within CCNA_00001 at 0.694 kb on + strand, within CCNA_00001 at 0.701 kb on - strand, within CCNA_00001 at 0.702 kb on - strand, within CCNA_00001 at 0.702 kb on - strand, within CCNA_00001 at 0.712 kb on - strand, within CCNA_00001 at 0.718 kb on - strand, within CCNA_00001 at 0.755 kb on + strand, within CCNA_00001 at 0.802 kb on + strand, within CCNA_00001 at 0.821 kb on + strand, within CCNA_00001 at 0.821 kb on + strand, within CCNA_00001 at 0.821 kb on + strand, within CCNA_00001 at 0.821 kb on + strand, within CCNA_00001 at 0.829 kb on - strand, within CCNA_00001 at 0.829 kb on - strand, within CCNA_00001 at 0.829 kb on - strand, within CCNA_00001 at 0.867 kb on - strand, within CCNA_00001 at 0.886 kb on + strand, within CCNA_00001 at 0.912 kb on - strand, within CCNA_00001 at 0.974 kb on - strand, within CCNA_00001 at 0.998 kb on - strand, within CCNA_00001 at 1.020 kb on + strand at 1.036 kb on + strand at 1.036 kb on + strand at 1.059 kb on + strand at 1.073 kb on + strand at 1.083 kb on + strand at 1.083 kb on + strand at 1.083 kb on + strand at 1.083 kb on + strand at 1.091 kb on - strand at 1.096 kb on + strand at 1.096 kb on + strand at 1.104 kb on - strand at 1.104 kb on - strand at 1.106 kb on - strand at 1.107 kb on + strand at 1.107 kb on + strand at 1.109 kb on + strand at 1.114 kb on + strand at 1.116 kb on - strand at 1.117 kb on - strand at 1.131 kb on + strand at 1.131 kb on + strand at 1.155 kb on + strand at 1.155 kb on + strand at 1.163 kb on - strand at 1.163 kb on - strand at 1.195 kb on - strand, within CCNA_00002 at 1.200 kb on - strand, within CCNA_00002 at 1.223 kb on - strand, within CCNA_00002 at 1.277 kb on + strand, within CCNA_00002 at 1.292 kb on + strand, within CCNA_00002 at 1.293 kb on + strand, within CCNA_00002 at 1.300 kb on - strand, within CCNA_00002 at 1.314 kb on - strand, within CCNA_00002 at 1.319 kb on + strand, within CCNA_00002 at 1.324 kb on + strand, within CCNA_00002 at 1.329 kb on + strand, within CCNA_00002 at 1.332 kb on - strand, within CCNA_00002 at 1.332 kb on - strand, within CCNA_00002 at 1.337 kb on - strand, within CCNA_00002 at 1.337 kb on - strand, within CCNA_00002 at 1.337 kb on - strand, within CCNA_00002 at 1.343 kb on + strand, within CCNA_00002 at 1.399 kb on + strand, within CCNA_00002 at 1.399 kb on + strand, within CCNA_00002 at 1.399 kb on + strand, within CCNA_00002 at 1.399 kb on + strand, within CCNA_00002 at 1.399 kb on + strand, within CCNA_00002 at 1.407 kb on - strand, within CCNA_00002 at 1.407 kb on - strand, within CCNA_00002 at 1.407 kb on - strand, within CCNA_00002 at 1.407 kb on - strand, within CCNA_00002 at 1.407 kb on - strand, within CCNA_00002 at 1.407 kb on - strand, within CCNA_00002 at 1.407 kb on - strand, within CCNA_00002 at 1.409 kb on + strand, within CCNA_00002 at 1.409 kb on + strand, within CCNA_00002 at 1.417 kb on - strand, within CCNA_00002 at 1.422 kb on - strand, within CCNA_00002 at 1.517 kb on + strand, within CCNA_00002 at 1.531 kb on + strand, within CCNA_00002 at 1.531 kb on + strand, within CCNA_00002 at 1.531 kb on + strand, within CCNA_00002 at 1.534 kb on + strand, within CCNA_00002 at 1.534 kb on + strand, within CCNA_00002 at 1.534 kb on + strand, within CCNA_00002 at 1.537 kb on - strand, within CCNA_00002 at 1.539 kb on - strand, within CCNA_00002 at 1.539 kb on - strand, within CCNA_00002 at 1.542 kb on - strand, within CCNA_00002 at 1.542 kb on - strand, within CCNA_00002 at 1.542 kb on - strand, within CCNA_00002 at 1.554 kb on + strand, within CCNA_00002 at 1.554 kb on + strand, within CCNA_00002 at 1.554 kb on + strand, within CCNA_00002 at 1.554 kb on + strand, within CCNA_00002 at 1.554 kb on + strand, within CCNA_00002 at 1.554 kb on + strand, within CCNA_00002 at 1.554 kb on + strand, within CCNA_00002 at 1.554 kb on + strand, within CCNA_00002 at 1.557 kb on - strand, within CCNA_00002 at 1.559 kb on + strand, within CCNA_00002 at 1.559 kb on + strand, within CCNA_00002 at 1.559 kb on + strand, within CCNA_00002 at 1.562 kb on - strand, within CCNA_00002 at 1.562 kb on - strand, within CCNA_00002 at 1.562 kb on - strand, within CCNA_00002 at 1.562 kb on - strand, within CCNA_00002 at 1.562 kb on - strand, within CCNA_00002 at 1.567 kb on - strand, within CCNA_00002 at 1.567 kb on - strand, within CCNA_00002 at 1.567 kb on - strand, within CCNA_00002 at 1.567 kb on - strand, within CCNA_00002 at 1.567 kb on - strand, within CCNA_00002 at 1.589 kb on + strand, within CCNA_00002 at 1.589 kb on - strand, within CCNA_00002 at 1.589 kb on - strand, within CCNA_00002 at 1.589 kb on - strand, within CCNA_00002 at 1.597 kb on - strand, within CCNA_00002 at 1.616 kb on + strand, within CCNA_00002 at 1.645 kb on + strand at 1.646 kb on - strand at 1.650 kb on + strand at 1.663 kb on - strand at 1.664 kb on + strand at 1.687 kb on - strand at 1.689 kb on + strand at 1.689 kb on + strand at 1.697 kb on - strand at 1.697 kb on - strand at 1.697 kb on - strand at 1.704 kb on - strand at 1.743 kb on + strand at 1.785 kb on - strand at 1.786 kb on + strand, within CCNA_00003 at 1.814 kb on - strand, within CCNA_00003 at 1.849 kb on + strand, within CCNA_00003 at 1.849 kb on + strand, within CCNA_00003 at 1.857 kb on - strand, within CCNA_00003 at 1.858 kb on - strand, within CCNA_00003 at 1.893 kb on + strand, within CCNA_00003 at 2.036 kb on + strand, within CCNA_00003 at 2.098 kb on - strand, within CCNA_00003
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL remove 32 + -0.1 239 + -0.8 242 - -0.1 247 - -2.1 247 - -0.3 257 - +0.1 258 - -1.1 265 - +0.1 276 - +1.1 312 + CCNA_00001 0.12 -1.2 322 - CCNA_00001 0.13 -0.2 382 + CCNA_00001 0.20 +0.5 387 + CCNA_00001 0.20 -0.5 387 + CCNA_00001 0.20 -0.8 389 + CCNA_00001 0.21 -1.0 397 - CCNA_00001 0.22 -0.1 399 + CCNA_00001 0.22 -1.0 400 - CCNA_00001 0.22 +0.1 436 - CCNA_00001 0.26 -0.3 468 - CCNA_00001 0.29 -2.4 496 + CCNA_00001 0.32 -0.9 505 - CCNA_00001 0.33 -0.5 512 + CCNA_00001 0.34 -0.9 607 + CCNA_00001 0.45 -0.7 627 + CCNA_00001 0.47 -1.0 649 + CCNA_00001 0.49 -2.3 649 + CCNA_00001 0.49 -1.9 649 + CCNA_00001 0.49 -1.2 649 + CCNA_00001 0.49 -1.3 650 + CCNA_00001 0.49 -0.2 654 + CCNA_00001 0.50 +0.3 657 - CCNA_00001 0.50 -1.1 657 - CCNA_00001 0.50 -2.1 663 - CCNA_00001 0.51 -1.7 687 - CCNA_00001 0.54 -0.5 688 + CCNA_00001 0.54 -0.4 694 + CCNA_00001 0.54 -1.6 701 - CCNA_00001 0.55 +1.1 702 - CCNA_00001 0.55 +0.0 702 - CCNA_00001 0.55 -0.1 712 - CCNA_00001 0.56 -0.3 718 - CCNA_00001 0.57 +0.3 755 + CCNA_00001 0.61 -1.9 802 + CCNA_00001 0.66 +0.1 821 + CCNA_00001 0.68 -4.0 821 + CCNA_00001 0.68 +1.8 821 + CCNA_00001 0.68 -2.3 821 + CCNA_00001 0.68 -1.6 829 - CCNA_00001 0.69 -0.7 829 - CCNA_00001 0.69 -3.4 829 - CCNA_00001 0.69 -0.3 867 - CCNA_00001 0.73 +0.0 886 + CCNA_00001 0.75 -1.5 912 - CCNA_00001 0.78 -1.4 974 - CCNA_00001 0.85 -0.3 998 - CCNA_00001 0.88 +0.5 1,020 + -0.9 1,036 + -1.3 1,036 + -1.1 1,059 + +0.3 1,073 + +0.0 1,083 + +0.1 1,083 + -0.1 1,083 + +0.5 1,083 + -0.9 1,091 - -0.2 1,096 + +1.0 1,096 + +0.8 1,104 - +1.7 1,104 - +0.4 1,106 - -1.4 1,107 + -1.2 1,107 + +1.0 1,109 + +0.2 1,114 + +0.4 1,116 - -0.4 1,117 - -0.9 1,131 + -0.2 1,131 + -0.1 1,155 + +0.0 1,155 + +0.3 1,163 - +0.1 1,163 - -0.3 1,195 - CCNA_00002 0.15 -0.6 1,200 - CCNA_00002 0.16 -0.1 1,223 - CCNA_00002 0.20 -0.1 1,277 + CCNA_00002 0.29 -0.5 1,292 + CCNA_00002 0.31 -0.7 1,293 + CCNA_00002 0.32 +0.4 1,300 - CCNA_00002 0.33 -0.8 1,314 - CCNA_00002 0.35 +0.2 1,319 + CCNA_00002 0.36 +0.1 1,324 + CCNA_00002 0.37 +0.6 1,329 + CCNA_00002 0.38 +0.2 1,332 - CCNA_00002 0.38 -0.3 1,332 - CCNA_00002 0.38 +0.0 1,337 - CCNA_00002 0.39 +0.7 1,337 - CCNA_00002 0.39 -1.3 1,337 - CCNA_00002 0.39 -0.0 1,343 + CCNA_00002 0.40 +0.6 1,399 + CCNA_00002 0.49 -0.9 1,399 + CCNA_00002 0.49 +0.6 1,399 + CCNA_00002 0.49 -1.0 1,399 + CCNA_00002 0.49 +0.6 1,399 + CCNA_00002 0.49 -0.2 1,407 - CCNA_00002 0.51 +0.2 1,407 - CCNA_00002 0.51 -0.1 1,407 - CCNA_00002 0.51 -0.6 1,407 - CCNA_00002 0.51 -0.8 1,407 - CCNA_00002 0.51 -0.7 1,407 - CCNA_00002 0.51 +0.2 1,407 - CCNA_00002 0.51 -1.9 1,409 + CCNA_00002 0.51 -0.1 1,409 + CCNA_00002 0.51 +0.7 1,417 - CCNA_00002 0.52 -0.5 1,422 - CCNA_00002 0.53 -1.4 1,517 + CCNA_00002 0.69 -0.3 1,531 + CCNA_00002 0.71 -0.1 1,531 + CCNA_00002 0.71 +0.2 1,531 + CCNA_00002 0.71 -0.3 1,534 + CCNA_00002 0.72 -0.1 1,534 + CCNA_00002 0.72 -0.0 1,534 + CCNA_00002 0.72 -0.1 1,537 - CCNA_00002 0.72 +0.1 1,539 - CCNA_00002 0.72 +0.2 1,539 - CCNA_00002 0.72 -0.2 1,542 - CCNA_00002 0.73 +0.2 1,542 - CCNA_00002 0.73 +0.8 1,542 - CCNA_00002 0.73 +1.7 1,554 + CCNA_00002 0.75 -0.8 1,554 + CCNA_00002 0.75 +0.0 1,554 + CCNA_00002 0.75 +0.1 1,554 + CCNA_00002 0.75 +0.3 1,554 + CCNA_00002 0.75 -0.0 1,554 + CCNA_00002 0.75 +0.1 1,554 + CCNA_00002 0.75 -0.3 1,554 + CCNA_00002 0.75 -0.6 1,557 - CCNA_00002 0.76 +0.1 1,559 + CCNA_00002 0.76 -0.1 1,559 + CCNA_00002 0.76 +0.3 1,559 + CCNA_00002 0.76 -0.2 1,562 - CCNA_00002 0.76 +0.2 1,562 - CCNA_00002 0.76 -0.3 1,562 - CCNA_00002 0.76 -0.8 1,562 - CCNA_00002 0.76 +0.4 1,562 - CCNA_00002 0.76 -0.4 1,567 - CCNA_00002 0.77 +0.1 1,567 - CCNA_00002 0.77 +0.3 1,567 - CCNA_00002 0.77 -0.2 1,567 - CCNA_00002 0.77 -0.6 1,567 - CCNA_00002 0.77 -0.5 1,589 + CCNA_00002 0.81 -0.7 1,589 - CCNA_00002 0.81 -0.0 1,589 - CCNA_00002 0.81 -0.1 1,589 - CCNA_00002 0.81 +0.2 1,597 - CCNA_00002 0.82 -0.1 1,616 + CCNA_00002 0.85 +0.2 1,645 + +0.3 1,646 - -2.1 1,650 + +0.1 1,663 - -0.2 1,664 + +0.7 1,687 - +0.3 1,689 + -0.1 1,689 + +1.1 1,697 - +0.0 1,697 - -0.2 1,697 - -0.3 1,704 - -0.0 1,743 + -0.2 1,785 - -2.0 1,786 + CCNA_00003 0.10 +1.5 1,814 - CCNA_00003 0.13 -0.3 1,849 + CCNA_00003 0.17 -0.4 1,849 + CCNA_00003 0.17 -1.4 1,857 - CCNA_00003 0.18 -0.3 1,858 - CCNA_00003 0.18 -0.2 1,893 + CCNA_00003 0.22 -0.1 2,036 + CCNA_00003 0.39 -0.8 2,098 - CCNA_00003 0.46 -1.1
Or see this region's nucleotide sequence