Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_21205

Experiment: m.b. Cisplatin 0.035 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_21195 and CA264_21200 are separated by 332 nucleotidesCA264_21200 and CA264_21205 are separated by 17 nucleotidesCA264_21205 and CA264_21210 are separated by 79 nucleotides CA264_21195: CA264_21195 - hypothetical protein, at 105,237 to 105,677 _21195 CA264_21200: CA264_21200 - hypothetical protein, at 106,010 to 106,597 _21200 CA264_21205: CA264_21205 - hypothetical protein, at 106,615 to 106,977 _21205 CA264_21210: CA264_21210 - SOS mutagenesis and repair protein UmuC, at 107,057 to 108,325 _21210 Position (kb) 106 107Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 105.621 kb on - strand, within CA264_21195at 105.624 kb on + strand, within CA264_21195at 105.654 kb on + strandat 105.663 kb on + strandat 105.671 kb on + strandat 105.672 kb on - strandat 105.672 kb on - strandat 105.675 kb on + strandat 105.675 kb on + strandat 105.678 kb on + strandat 105.679 kb on - strandat 105.679 kb on - strandat 105.692 kb on - strandat 105.692 kb on - strandat 105.692 kb on - strandat 105.756 kb on - strandat 105.769 kb on - strandat 105.793 kb on + strandat 105.794 kb on - strandat 105.794 kb on - strandat 105.809 kb on - strandat 105.812 kb on + strandat 105.813 kb on - strandat 105.815 kb on - strandat 105.815 kb on - strandat 105.815 kb on - strandat 105.815 kb on - strandat 105.817 kb on - strandat 105.842 kb on - strandat 105.922 kb on + strandat 105.944 kb on + strandat 105.950 kb on - strandat 105.955 kb on + strandat 105.955 kb on + strandat 105.956 kb on - strandat 105.957 kb on + strandat 105.957 kb on + strandat 105.957 kb on + strandat 105.957 kb on + strandat 105.957 kb on + strandat 105.958 kb on - strandat 105.958 kb on - strandat 105.958 kb on - strandat 105.958 kb on - strandat 105.958 kb on - strandat 105.959 kb on + strandat 105.959 kb on + strandat 105.960 kb on - strandat 105.962 kb on + strandat 105.962 kb on + strandat 105.976 kb on + strandat 105.977 kb on - strandat 106.009 kb on + strandat 106.097 kb on + strand, within CA264_21200at 106.097 kb on + strand, within CA264_21200at 106.098 kb on - strand, within CA264_21200at 106.129 kb on + strand, within CA264_21200at 106.136 kb on + strand, within CA264_21200at 106.157 kb on + strand, within CA264_21200at 106.175 kb on + strand, within CA264_21200at 106.176 kb on - strand, within CA264_21200at 106.316 kb on + strand, within CA264_21200at 106.316 kb on + strand, within CA264_21200at 106.317 kb on - strand, within CA264_21200at 106.364 kb on + strand, within CA264_21200at 106.365 kb on - strand, within CA264_21200at 106.365 kb on - strand, within CA264_21200at 106.381 kb on - strand, within CA264_21200at 106.483 kb on + strand, within CA264_21200at 106.484 kb on - strand, within CA264_21200at 106.484 kb on - strand, within CA264_21200at 106.484 kb on - strand, within CA264_21200at 106.502 kb on + strand, within CA264_21200at 106.503 kb on - strand, within CA264_21200at 106.503 kb on - strand, within CA264_21200at 106.504 kb on + strand, within CA264_21200at 106.515 kb on - strand, within CA264_21200at 106.515 kb on - strand, within CA264_21200at 106.604 kb on + strandat 106.605 kb on - strandat 106.607 kb on - strandat 106.607 kb on - strandat 106.607 kb on - strandat 106.607 kb on - strandat 106.609 kb on + strandat 106.610 kb on - strandat 106.610 kb on - strandat 106.611 kb on + strandat 106.611 kb on + strandat 106.611 kb on + strandat 106.611 kb on + strandat 106.612 kb on - strandat 106.612 kb on - strandat 106.613 kb on + strandat 106.613 kb on + strandat 106.614 kb on - strandat 106.614 kb on - strandat 106.628 kb on - strandat 106.630 kb on + strandat 106.631 kb on - strandat 106.647 kb on - strandat 106.671 kb on + strand, within CA264_21205at 106.671 kb on + strand, within CA264_21205at 106.672 kb on - strand, within CA264_21205at 106.672 kb on - strand, within CA264_21205at 106.672 kb on - strand, within CA264_21205at 106.672 kb on - strand, within CA264_21205at 106.674 kb on + strand, within CA264_21205at 106.674 kb on + strand, within CA264_21205at 106.675 kb on - strand, within CA264_21205at 106.676 kb on + strand, within CA264_21205at 106.808 kb on + strand, within CA264_21205at 106.808 kb on + strand, within CA264_21205at 106.829 kb on + strand, within CA264_21205at 106.892 kb on + strand, within CA264_21205at 106.978 kb on - strandat 106.979 kb on + strandat 107.082 kb on - strandat 107.092 kb on + strandat 107.093 kb on - strandat 107.094 kb on + strandat 107.095 kb on - strandat 107.095 kb on - strandat 107.131 kb on + strandat 107.153 kb on + strandat 107.160 kb on - strandat 107.185 kb on + strand, within CA264_21210at 107.185 kb on + strand, within CA264_21210at 107.221 kb on + strand, within CA264_21210at 107.246 kb on - strand, within CA264_21210at 107.246 kb on - strand, within CA264_21210at 107.286 kb on + strand, within CA264_21210at 107.323 kb on - strand, within CA264_21210at 107.323 kb on - strand, within CA264_21210at 107.349 kb on + strand, within CA264_21210at 107.409 kb on + strand, within CA264_21210at 107.409 kb on + strand, within CA264_21210at 107.409 kb on + strand, within CA264_21210at 107.410 kb on - strand, within CA264_21210at 107.412 kb on + strand, within CA264_21210at 107.412 kb on + strand, within CA264_21210at 107.440 kb on + strand, within CA264_21210at 107.441 kb on - strand, within CA264_21210at 107.444 kb on - strand, within CA264_21210at 107.444 kb on - strand, within CA264_21210at 107.612 kb on + strand, within CA264_21210at 107.670 kb on - strand, within CA264_21210at 107.771 kb on + strand, within CA264_21210at 107.771 kb on + strand, within CA264_21210at 107.772 kb on - strand, within CA264_21210at 107.910 kb on - strand, within CA264_21210at 107.974 kb on + strand, within CA264_21210at 107.975 kb on - strand, within CA264_21210

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.035 mg/ml
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105,621 - CA264_21195 0.87 -1.7
105,624 + CA264_21195 0.88 +0.3
105,654 + -2.5
105,663 + -0.3
105,671 + +0.7
105,672 - +0.2
105,672 - -0.9
105,675 + -3.1
105,675 + -0.4
105,678 + +0.1
105,679 - -0.2
105,679 - +0.3
105,692 - -2.7
105,692 - -0.6
105,692 - -1.5
105,756 - +0.1
105,769 - -0.6
105,793 + -1.4
105,794 - -0.9
105,794 - -0.6
105,809 - +0.5
105,812 + -0.8
105,813 - +2.3
105,815 - +0.3
105,815 - +0.5
105,815 - -0.9
105,815 - -0.5
105,817 - +0.3
105,842 - -0.5
105,922 + -1.3
105,944 + -1.2
105,950 - -0.4
105,955 + -0.3
105,955 + -0.6
105,956 - -0.1
105,957 + -0.3
105,957 + -0.0
105,957 + -0.1
105,957 + -0.5
105,957 + -1.4
105,958 - +0.4
105,958 - -1.1
105,958 - -0.8
105,958 - -1.4
105,958 - -0.6
105,959 + -0.5
105,959 + -1.3
105,960 - -0.7
105,962 + -1.1
105,962 + -0.5
105,976 + +0.6
105,977 - -0.0
106,009 + -0.9
106,097 + CA264_21200 0.15 -0.8
106,097 + CA264_21200 0.15 -2.7
106,098 - CA264_21200 0.15 -0.8
106,129 + CA264_21200 0.20 -0.4
106,136 + CA264_21200 0.21 -0.0
106,157 + CA264_21200 0.25 -0.0
106,175 + CA264_21200 0.28 +0.2
106,176 - CA264_21200 0.28 -0.3
106,316 + CA264_21200 0.52 -1.3
106,316 + CA264_21200 0.52 -2.2
106,317 - CA264_21200 0.52 -0.5
106,364 + CA264_21200 0.60 -0.4
106,365 - CA264_21200 0.60 +0.5
106,365 - CA264_21200 0.60 -0.2
106,381 - CA264_21200 0.63 -0.7
106,483 + CA264_21200 0.80 -1.7
106,484 - CA264_21200 0.81 +0.5
106,484 - CA264_21200 0.81 -1.1
106,484 - CA264_21200 0.81 -0.1
106,502 + CA264_21200 0.84 -1.7
106,503 - CA264_21200 0.84 -1.9
106,503 - CA264_21200 0.84 -1.0
106,504 + CA264_21200 0.84 +1.9
106,515 - CA264_21200 0.86 -0.6
106,515 - CA264_21200 0.86 -0.9
106,604 + -1.4
106,605 - -3.2
106,607 - -0.7
106,607 - -1.3
106,607 - +0.0
106,607 - -0.9
106,609 + -2.1
106,610 - -2.2
106,610 - -0.4
106,611 + -0.8
106,611 + -1.0
106,611 + -1.2
106,611 + -0.7
106,612 - +0.5
106,612 - -0.1
106,613 + -0.7
106,613 + -0.3
106,614 - -1.3
106,614 - -0.7
106,628 - -1.5
106,630 + -0.6
106,631 - +0.1
106,647 - +0.3
106,671 + CA264_21205 0.15 -0.6
106,671 + CA264_21205 0.15 -1.3
106,672 - CA264_21205 0.16 -0.6
106,672 - CA264_21205 0.16 -0.3
106,672 - CA264_21205 0.16 -0.5
106,672 - CA264_21205 0.16 -0.9
106,674 + CA264_21205 0.16 -0.1
106,674 + CA264_21205 0.16 -1.0
106,675 - CA264_21205 0.17 -0.3
106,676 + CA264_21205 0.17 +0.6
106,808 + CA264_21205 0.53 -0.3
106,808 + CA264_21205 0.53 -0.8
106,829 + CA264_21205 0.59 -1.4
106,892 + CA264_21205 0.76 -0.7
106,978 - -0.9
106,979 + -1.1
107,082 - -0.7
107,092 + -0.9
107,093 - +0.1
107,094 + -0.8
107,095 - -0.5
107,095 - -0.7
107,131 + +0.5
107,153 + -0.6
107,160 - -0.4
107,185 + CA264_21210 0.10 -0.5
107,185 + CA264_21210 0.10 -1.5
107,221 + CA264_21210 0.13 -1.3
107,246 - CA264_21210 0.15 -0.9
107,246 - CA264_21210 0.15 +0.9
107,286 + CA264_21210 0.18 -1.6
107,323 - CA264_21210 0.21 -1.3
107,323 - CA264_21210 0.21 -0.9
107,349 + CA264_21210 0.23 -0.3
107,409 + CA264_21210 0.28 -1.9
107,409 + CA264_21210 0.28 -0.7
107,409 + CA264_21210 0.28 -2.5
107,410 - CA264_21210 0.28 -0.7
107,412 + CA264_21210 0.28 -1.4
107,412 + CA264_21210 0.28 -1.3
107,440 + CA264_21210 0.30 -0.5
107,441 - CA264_21210 0.30 -0.0
107,444 - CA264_21210 0.30 -1.1
107,444 - CA264_21210 0.30 -0.4
107,612 + CA264_21210 0.44 -0.9
107,670 - CA264_21210 0.48 -0.6
107,771 + CA264_21210 0.56 -0.4
107,771 + CA264_21210 0.56 -1.9
107,772 - CA264_21210 0.56 -0.9
107,910 - CA264_21210 0.67 -1.7
107,974 + CA264_21210 0.72 +0.2
107,975 - CA264_21210 0.72 -1.4

Or see this region's nucleotide sequence