Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_19800

Experiment: m.b. Cisplatin 0.035 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_19790 and CA264_19795 are separated by 269 nucleotidesCA264_19795 and CA264_19800 are separated by 214 nucleotidesCA264_19800 and CA264_19805 are separated by 110 nucleotides CA264_19790: CA264_19790 - acyl-CoA dehydrogenase, at 4,567,946 to 4,569,124 _19790 CA264_19795: CA264_19795 - hypothetical protein, at 4,569,394 to 4,569,900 _19795 CA264_19800: CA264_19800 - Holliday junction branch migration DNA helicase RuvB, at 4,570,115 to 4,571,158 _19800 CA264_19805: CA264_19805 - hypothetical protein, at 4,571,269 to 4,572,168 _19805 Position (kb) 4570 4571 4572Strain fitness (log2 ratio) -2 -1 0 1 2at 4569.157 kb on + strandat 4569.164 kb on + strandat 4569.164 kb on + strandat 4569.166 kb on + strandat 4569.205 kb on - strandat 4569.226 kb on + strandat 4569.261 kb on + strandat 4569.261 kb on + strandat 4569.265 kb on + strandat 4569.300 kb on + strandat 4569.300 kb on + strandat 4569.300 kb on + strandat 4569.301 kb on - strandat 4569.302 kb on + strandat 4569.308 kb on - strandat 4569.314 kb on - strandat 4569.317 kb on + strandat 4569.380 kb on + strandat 4569.443 kb on + strandat 4569.485 kb on + strand, within CA264_19795at 4569.517 kb on - strand, within CA264_19795at 4569.563 kb on + strand, within CA264_19795at 4569.720 kb on + strand, within CA264_19795at 4569.721 kb on - strand, within CA264_19795at 4569.725 kb on - strand, within CA264_19795at 4569.725 kb on - strand, within CA264_19795at 4569.725 kb on - strand, within CA264_19795at 4569.750 kb on + strand, within CA264_19795at 4569.750 kb on + strand, within CA264_19795at 4569.750 kb on + strand, within CA264_19795at 4569.796 kb on + strand, within CA264_19795at 4569.799 kb on - strand, within CA264_19795at 4569.900 kb on + strandat 4569.900 kb on + strandat 4569.901 kb on - strandat 4569.901 kb on - strandat 4569.931 kb on + strandat 4569.932 kb on - strandat 4569.932 kb on - strandat 4570.074 kb on + strandat 4570.108 kb on + strandat 4570.109 kb on - strandat 4570.110 kb on + strandat 4570.110 kb on + strandat 4571.161 kb on - strandat 4571.161 kb on - strandat 4571.219 kb on + strandat 4571.228 kb on + strandat 4571.322 kb on + strandat 4571.352 kb on + strandat 4571.353 kb on - strandat 4571.357 kb on - strandat 4571.366 kb on + strand, within CA264_19805at 4571.366 kb on + strand, within CA264_19805at 4571.366 kb on + strand, within CA264_19805at 4571.366 kb on + strand, within CA264_19805at 4571.367 kb on - strand, within CA264_19805at 4571.367 kb on - strand, within CA264_19805at 4571.371 kb on + strand, within CA264_19805at 4571.372 kb on - strand, within CA264_19805at 4571.372 kb on - strand, within CA264_19805at 4571.373 kb on + strand, within CA264_19805at 4571.373 kb on + strand, within CA264_19805at 4571.373 kb on + strand, within CA264_19805at 4571.377 kb on + strand, within CA264_19805at 4571.377 kb on + strand, within CA264_19805at 4571.378 kb on - strand, within CA264_19805at 4571.378 kb on - strand, within CA264_19805at 4571.378 kb on - strand, within CA264_19805at 4571.378 kb on - strand, within CA264_19805at 4571.387 kb on - strand, within CA264_19805at 4571.402 kb on - strand, within CA264_19805at 4571.407 kb on + strand, within CA264_19805at 4571.407 kb on + strand, within CA264_19805at 4571.480 kb on - strand, within CA264_19805at 4571.523 kb on + strand, within CA264_19805at 4571.549 kb on + strand, within CA264_19805at 4571.549 kb on + strand, within CA264_19805at 4571.549 kb on + strand, within CA264_19805at 4571.549 kb on + strand, within CA264_19805at 4571.549 kb on + strand, within CA264_19805at 4571.550 kb on - strand, within CA264_19805at 4571.550 kb on - strand, within CA264_19805at 4571.550 kb on - strand, within CA264_19805at 4571.551 kb on + strand, within CA264_19805at 4571.570 kb on - strand, within CA264_19805at 4571.570 kb on - strand, within CA264_19805at 4571.571 kb on + strand, within CA264_19805at 4571.571 kb on + strand, within CA264_19805at 4571.620 kb on + strand, within CA264_19805at 4571.632 kb on + strand, within CA264_19805at 4571.632 kb on + strand, within CA264_19805at 4571.638 kb on - strand, within CA264_19805at 4571.654 kb on + strand, within CA264_19805at 4571.683 kb on + strand, within CA264_19805at 4571.716 kb on + strand, within CA264_19805at 4571.717 kb on - strand, within CA264_19805at 4571.731 kb on + strand, within CA264_19805at 4571.741 kb on - strand, within CA264_19805at 4571.781 kb on + strand, within CA264_19805at 4571.782 kb on - strand, within CA264_19805at 4571.782 kb on - strand, within CA264_19805at 4571.810 kb on - strand, within CA264_19805at 4571.836 kb on - strand, within CA264_19805at 4571.865 kb on + strand, within CA264_19805at 4571.894 kb on - strand, within CA264_19805at 4571.922 kb on + strand, within CA264_19805at 4571.935 kb on + strand, within CA264_19805at 4571.978 kb on - strand, within CA264_19805at 4571.978 kb on - strand, within CA264_19805at 4571.990 kb on - strand, within CA264_19805at 4571.990 kb on - strand, within CA264_19805at 4572.038 kb on + strand, within CA264_19805at 4572.039 kb on - strand, within CA264_19805at 4572.039 kb on - strand, within CA264_19805at 4572.055 kb on - strand, within CA264_19805at 4572.065 kb on + strand, within CA264_19805at 4572.090 kb on + strandat 4572.091 kb on - strandat 4572.098 kb on - strandat 4572.120 kb on + strandat 4572.125 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.035 mg/ml
remove
4,569,157 + +1.9
4,569,164 + -1.4
4,569,164 + -0.6
4,569,166 + +0.5
4,569,205 - -0.6
4,569,226 + -0.2
4,569,261 + -0.5
4,569,261 + -1.5
4,569,265 + -0.8
4,569,300 + -0.7
4,569,300 + -0.3
4,569,300 + -1.2
4,569,301 - -0.1
4,569,302 + -0.9
4,569,308 - +0.4
4,569,314 - +0.2
4,569,317 + +1.1
4,569,380 + +0.8
4,569,443 + -0.3
4,569,485 + CA264_19795 0.18 -1.0
4,569,517 - CA264_19795 0.24 -1.3
4,569,563 + CA264_19795 0.33 -1.2
4,569,720 + CA264_19795 0.64 +0.2
4,569,721 - CA264_19795 0.64 +0.2
4,569,725 - CA264_19795 0.65 +1.9
4,569,725 - CA264_19795 0.65 -0.6
4,569,725 - CA264_19795 0.65 +0.4
4,569,750 + CA264_19795 0.70 -2.5
4,569,750 + CA264_19795 0.70 -2.6
4,569,750 + CA264_19795 0.70 +1.5
4,569,796 + CA264_19795 0.79 -1.6
4,569,799 - CA264_19795 0.80 -2.0
4,569,900 + +1.1
4,569,900 + -1.4
4,569,901 - +2.7
4,569,901 - -0.6
4,569,931 + -0.5
4,569,932 - -0.0
4,569,932 - +0.6
4,570,074 + -2.0
4,570,108 + -1.7
4,570,109 - -0.6
4,570,110 + -0.3
4,570,110 + -0.5
4,571,161 - +1.2
4,571,161 - -2.7
4,571,219 + -0.8
4,571,228 + +0.1
4,571,322 + -0.5
4,571,352 + -2.3
4,571,353 - +0.4
4,571,357 - +0.5
4,571,366 + CA264_19805 0.11 -0.1
4,571,366 + CA264_19805 0.11 -0.1
4,571,366 + CA264_19805 0.11 +0.3
4,571,366 + CA264_19805 0.11 -1.4
4,571,367 - CA264_19805 0.11 -0.3
4,571,367 - CA264_19805 0.11 -0.3
4,571,371 + CA264_19805 0.11 -0.1
4,571,372 - CA264_19805 0.11 -1.8
4,571,372 - CA264_19805 0.11 +0.3
4,571,373 + CA264_19805 0.12 -0.7
4,571,373 + CA264_19805 0.12 -1.7
4,571,373 + CA264_19805 0.12 +1.1
4,571,377 + CA264_19805 0.12 -1.0
4,571,377 + CA264_19805 0.12 -1.1
4,571,378 - CA264_19805 0.12 -0.4
4,571,378 - CA264_19805 0.12 -1.1
4,571,378 - CA264_19805 0.12 -0.4
4,571,378 - CA264_19805 0.12 -0.2
4,571,387 - CA264_19805 0.13 +1.1
4,571,402 - CA264_19805 0.15 -0.2
4,571,407 + CA264_19805 0.15 +1.8
4,571,407 + CA264_19805 0.15 -1.5
4,571,480 - CA264_19805 0.23 -1.4
4,571,523 + CA264_19805 0.28 +0.4
4,571,549 + CA264_19805 0.31 +1.0
4,571,549 + CA264_19805 0.31 -1.6
4,571,549 + CA264_19805 0.31 +0.0
4,571,549 + CA264_19805 0.31 -0.2
4,571,549 + CA264_19805 0.31 +0.3
4,571,550 - CA264_19805 0.31 -0.0
4,571,550 - CA264_19805 0.31 -0.1
4,571,550 - CA264_19805 0.31 -0.1
4,571,551 + CA264_19805 0.31 +0.6
4,571,570 - CA264_19805 0.33 -0.6
4,571,570 - CA264_19805 0.33 -0.7
4,571,571 + CA264_19805 0.34 -0.6
4,571,571 + CA264_19805 0.34 -0.5
4,571,620 + CA264_19805 0.39 +1.5
4,571,632 + CA264_19805 0.40 +0.6
4,571,632 + CA264_19805 0.40 -0.2
4,571,638 - CA264_19805 0.41 -0.2
4,571,654 + CA264_19805 0.43 +0.5
4,571,683 + CA264_19805 0.46 +0.0
4,571,716 + CA264_19805 0.50 -1.4
4,571,717 - CA264_19805 0.50 -1.2
4,571,731 + CA264_19805 0.51 -0.9
4,571,741 - CA264_19805 0.52 -0.4
4,571,781 + CA264_19805 0.57 +0.9
4,571,782 - CA264_19805 0.57 +1.0
4,571,782 - CA264_19805 0.57 +0.4
4,571,810 - CA264_19805 0.60 +0.2
4,571,836 - CA264_19805 0.63 +0.5
4,571,865 + CA264_19805 0.66 -0.3
4,571,894 - CA264_19805 0.69 -1.0
4,571,922 + CA264_19805 0.73 -0.4
4,571,935 + CA264_19805 0.74 -1.5
4,571,978 - CA264_19805 0.79 -2.3
4,571,978 - CA264_19805 0.79 -1.4
4,571,990 - CA264_19805 0.80 -0.2
4,571,990 - CA264_19805 0.80 +0.0
4,572,038 + CA264_19805 0.85 -0.9
4,572,039 - CA264_19805 0.86 +0.6
4,572,039 - CA264_19805 0.86 -0.6
4,572,055 - CA264_19805 0.87 -1.5
4,572,065 + CA264_19805 0.88 -1.3
4,572,090 + -2.0
4,572,091 - -0.1
4,572,098 - +2.3
4,572,120 + -0.1
4,572,125 - -0.8

Or see this region's nucleotide sequence