Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_16705

Experiment: m.b. Cisplatin 0.035 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_16700 and CA264_16705 are separated by 194 nucleotidesCA264_16705 and CA264_16710 overlap by 4 nucleotidesCA264_16710 and CA264_16715 are separated by 281 nucleotides CA264_16700: CA264_16700 - T9SS C-terminal target domain-containing protein, at 3,883,839 to 3,885,998 _16700 CA264_16705: CA264_16705 - hypothetical protein, at 3,886,193 to 3,888,187 _16705 CA264_16710: CA264_16710 - transcriptional regulator, at 3,888,184 to 3,888,573 _16710 CA264_16715: CA264_16715 - flagellar motor protein MotB, at 3,888,855 to 3,890,840 _16715 Position (kb) 3886 3887 3888 3889Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3885.196 kb on + strand, within CA264_16700at 3885.197 kb on - strand, within CA264_16700at 3885.197 kb on - strand, within CA264_16700at 3885.220 kb on + strand, within CA264_16700at 3885.303 kb on + strand, within CA264_16700at 3885.304 kb on - strand, within CA264_16700at 3885.475 kb on + strand, within CA264_16700at 3885.476 kb on - strand, within CA264_16700at 3885.543 kb on + strand, within CA264_16700at 3885.573 kb on - strand, within CA264_16700at 3885.710 kb on + strand, within CA264_16700at 3885.765 kb on + strand, within CA264_16700at 3885.765 kb on + strand, within CA264_16700at 3885.766 kb on - strand, within CA264_16700at 3885.766 kb on - strand, within CA264_16700at 3885.779 kb on + strand, within CA264_16700at 3885.780 kb on - strand, within CA264_16700at 3885.781 kb on + strand, within CA264_16700at 3885.837 kb on + strandat 3885.844 kb on - strandat 3885.985 kb on + strandat 3885.986 kb on - strandat 3885.999 kb on - strandat 3885.999 kb on - strandat 3885.999 kb on - strandat 3886.065 kb on + strandat 3886.068 kb on - strandat 3886.068 kb on - strandat 3886.072 kb on - strandat 3886.081 kb on + strandat 3886.082 kb on - strandat 3886.095 kb on + strandat 3886.096 kb on - strandat 3886.096 kb on - strandat 3886.097 kb on + strandat 3886.097 kb on + strandat 3886.098 kb on - strandat 3886.098 kb on - strandat 3886.104 kb on - strandat 3886.129 kb on - strandat 3886.152 kb on + strandat 3886.189 kb on + strandat 3886.190 kb on - strandat 3886.233 kb on + strandat 3886.510 kb on + strand, within CA264_16705at 3886.511 kb on - strand, within CA264_16705at 3886.511 kb on - strand, within CA264_16705at 3886.529 kb on - strand, within CA264_16705at 3886.596 kb on - strand, within CA264_16705at 3886.630 kb on - strand, within CA264_16705at 3886.630 kb on - strand, within CA264_16705at 3886.647 kb on - strand, within CA264_16705at 3886.647 kb on - strand, within CA264_16705at 3886.675 kb on + strand, within CA264_16705at 3886.768 kb on + strand, within CA264_16705at 3886.829 kb on + strand, within CA264_16705at 3886.872 kb on - strand, within CA264_16705at 3886.958 kb on + strand, within CA264_16705at 3887.514 kb on + strand, within CA264_16705at 3887.530 kb on + strand, within CA264_16705at 3887.530 kb on + strand, within CA264_16705at 3887.531 kb on - strand, within CA264_16705at 3887.531 kb on - strand, within CA264_16705at 3887.769 kb on + strand, within CA264_16705at 3887.784 kb on - strand, within CA264_16705at 3887.856 kb on + strand, within CA264_16705at 3887.916 kb on - strand, within CA264_16705at 3887.921 kb on - strand, within CA264_16705at 3887.921 kb on - strand, within CA264_16705at 3887.980 kb on + strand, within CA264_16705at 3887.980 kb on - strand, within CA264_16705at 3887.989 kb on + strandat 3888.081 kb on - strandat 3888.099 kb on - strandat 3888.150 kb on - strandat 3888.208 kb on - strandat 3888.388 kb on - strand, within CA264_16710at 3888.426 kb on + strand, within CA264_16710at 3888.441 kb on + strand, within CA264_16710at 3888.517 kb on + strand, within CA264_16710at 3888.546 kb on + strandat 3888.565 kb on + strandat 3888.566 kb on - strandat 3888.581 kb on - strandat 3888.588 kb on + strandat 3888.589 kb on - strandat 3888.590 kb on + strandat 3888.590 kb on + strandat 3888.590 kb on + strandat 3888.591 kb on - strandat 3888.595 kb on + strandat 3888.596 kb on - strandat 3888.596 kb on - strandat 3888.599 kb on + strandat 3888.599 kb on + strandat 3888.608 kb on + strandat 3888.705 kb on + strandat 3888.786 kb on - strandat 3888.842 kb on + strandat 3888.842 kb on + strandat 3888.843 kb on - strandat 3888.969 kb on + strandat 3888.999 kb on - strandat 3889.003 kb on + strandat 3889.048 kb on + strandat 3889.083 kb on - strand, within CA264_16715at 3889.184 kb on - strand, within CA264_16715at 3889.184 kb on - strand, within CA264_16715

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.035 mg/ml
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3,885,196 + CA264_16700 0.63 +1.3
3,885,197 - CA264_16700 0.63 +0.1
3,885,197 - CA264_16700 0.63 +0.3
3,885,220 + CA264_16700 0.64 -0.1
3,885,303 + CA264_16700 0.68 -1.9
3,885,304 - CA264_16700 0.68 +0.6
3,885,475 + CA264_16700 0.76 -0.6
3,885,476 - CA264_16700 0.76 +0.2
3,885,543 + CA264_16700 0.79 -0.5
3,885,573 - CA264_16700 0.80 -0.7
3,885,710 + CA264_16700 0.87 -0.7
3,885,765 + CA264_16700 0.89 -0.3
3,885,765 + CA264_16700 0.89 -1.7
3,885,766 - CA264_16700 0.89 -0.2
3,885,766 - CA264_16700 0.89 -2.0
3,885,779 + CA264_16700 0.90 -0.2
3,885,780 - CA264_16700 0.90 -0.5
3,885,781 + CA264_16700 0.90 -0.4
3,885,837 + +0.2
3,885,844 - +0.8
3,885,985 + +0.8
3,885,986 - -0.6
3,885,999 - -0.6
3,885,999 - +0.3
3,885,999 - -0.5
3,886,065 + +0.3
3,886,068 - +0.1
3,886,068 - -1.5
3,886,072 - -0.0
3,886,081 + -0.9
3,886,082 - -0.3
3,886,095 + +0.6
3,886,096 - +0.3
3,886,096 - -0.3
3,886,097 + -1.1
3,886,097 + +0.4
3,886,098 - -0.0
3,886,098 - +0.2
3,886,104 - +1.5
3,886,129 - -0.7
3,886,152 + +0.2
3,886,189 + -0.0
3,886,190 - -1.2
3,886,233 + -0.1
3,886,510 + CA264_16705 0.16 -0.7
3,886,511 - CA264_16705 0.16 -1.1
3,886,511 - CA264_16705 0.16 -0.2
3,886,529 - CA264_16705 0.17 -0.2
3,886,596 - CA264_16705 0.20 +0.5
3,886,630 - CA264_16705 0.22 +0.8
3,886,630 - CA264_16705 0.22 -1.5
3,886,647 - CA264_16705 0.23 +0.5
3,886,647 - CA264_16705 0.23 -1.0
3,886,675 + CA264_16705 0.24 -1.0
3,886,768 + CA264_16705 0.29 -0.2
3,886,829 + CA264_16705 0.32 +0.3
3,886,872 - CA264_16705 0.34 -2.0
3,886,958 + CA264_16705 0.38 -1.1
3,887,514 + CA264_16705 0.66 +1.5
3,887,530 + CA264_16705 0.67 +3.3
3,887,530 + CA264_16705 0.67 +2.6
3,887,531 - CA264_16705 0.67 -0.4
3,887,531 - CA264_16705 0.67 -0.4
3,887,769 + CA264_16705 0.79 -0.3
3,887,784 - CA264_16705 0.80 -0.0
3,887,856 + CA264_16705 0.83 -1.1
3,887,916 - CA264_16705 0.86 -0.8
3,887,921 - CA264_16705 0.87 -0.4
3,887,921 - CA264_16705 0.87 -1.7
3,887,980 + CA264_16705 0.90 -1.1
3,887,980 - CA264_16705 0.90 -0.1
3,887,989 + -0.5
3,888,081 - +0.1
3,888,099 - -0.8
3,888,150 - -1.2
3,888,208 - -0.2
3,888,388 - CA264_16710 0.52 -0.2
3,888,426 + CA264_16710 0.62 -0.7
3,888,441 + CA264_16710 0.66 -0.5
3,888,517 + CA264_16710 0.85 +0.0
3,888,546 + -0.8
3,888,565 + -0.4
3,888,566 - +1.3
3,888,581 - +0.3
3,888,588 + +0.5
3,888,589 - -1.4
3,888,590 + +0.1
3,888,590 + -0.4
3,888,590 + -0.3
3,888,591 - -0.0
3,888,595 + -0.1
3,888,596 - +1.1
3,888,596 - -0.2
3,888,599 + -0.9
3,888,599 + -0.7
3,888,608 + +0.4
3,888,705 + -0.6
3,888,786 - -0.0
3,888,842 + +0.1
3,888,842 + -0.8
3,888,843 - +0.8
3,888,969 + -0.8
3,888,999 - +1.0
3,889,003 + -0.5
3,889,048 + +1.1
3,889,083 - CA264_16715 0.11 -0.2
3,889,184 - CA264_16715 0.17 -1.0
3,889,184 - CA264_16715 0.17 -0.6

Or see this region's nucleotide sequence