Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_16565

Experiment: m.b. Cisplatin 0.035 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_16565 and CA264_16570 are separated by 75 nucleotides CA264_16565: CA264_16565 - hypothetical protein, at 3,852,190 to 3,852,621 _16565 CA264_16570: CA264_16570 - hypothetical protein, at 3,852,697 to 3,853,254 _16570 Position (kb) 3852 3853Strain fitness (log2 ratio) -2 -1 0 1 2at 3851.197 kb on + strandat 3851.365 kb on + strandat 3851.406 kb on + strandat 3851.406 kb on + strandat 3851.408 kb on + strandat 3851.409 kb on - strandat 3851.409 kb on - strandat 3851.409 kb on - strandat 3851.409 kb on - strandat 3851.466 kb on - strandat 3851.554 kb on + strandat 3851.577 kb on + strandat 3851.578 kb on - strandat 3851.611 kb on - strandat 3851.648 kb on + strandat 3851.654 kb on + strandat 3851.746 kb on + strandat 3851.746 kb on + strandat 3851.747 kb on - strandat 3851.747 kb on - strandat 3851.908 kb on - strandat 3851.925 kb on + strandat 3851.925 kb on + strandat 3851.926 kb on - strandat 3851.973 kb on + strandat 3851.984 kb on - strandat 3851.985 kb on + strandat 3851.985 kb on + strandat 3852.151 kb on + strandat 3852.152 kb on - strandat 3852.152 kb on - strandat 3852.154 kb on - strandat 3852.154 kb on - strandat 3852.157 kb on - strandat 3852.210 kb on + strandat 3852.210 kb on + strandat 3852.227 kb on + strandat 3852.243 kb on - strand, within CA264_16565at 3852.285 kb on - strand, within CA264_16565at 3852.285 kb on - strand, within CA264_16565at 3852.285 kb on - strand, within CA264_16565at 3852.292 kb on - strand, within CA264_16565at 3852.500 kb on - strand, within CA264_16565at 3852.547 kb on - strand, within CA264_16565at 3852.547 kb on - strand, within CA264_16565at 3852.572 kb on + strand, within CA264_16565at 3852.593 kb on - strandat 3852.720 kb on + strandat 3852.814 kb on - strand, within CA264_16570at 3852.929 kb on + strand, within CA264_16570at 3852.930 kb on - strand, within CA264_16570at 3853.011 kb on - strand, within CA264_16570at 3853.052 kb on + strand, within CA264_16570at 3853.052 kb on + strand, within CA264_16570at 3853.070 kb on + strand, within CA264_16570at 3853.165 kb on + strand, within CA264_16570at 3853.165 kb on + strand, within CA264_16570at 3853.255 kb on - strandat 3853.259 kb on + strandat 3853.259 kb on + strandat 3853.260 kb on - strandat 3853.320 kb on + strandat 3853.359 kb on + strandat 3853.361 kb on + strandat 3853.361 kb on + strandat 3853.362 kb on - strandat 3853.365 kb on + strandat 3853.365 kb on + strandat 3853.365 kb on + strandat 3853.365 kb on + strandat 3853.366 kb on - strandat 3853.367 kb on + strandat 3853.367 kb on + strandat 3853.368 kb on - strandat 3853.400 kb on + strandat 3853.490 kb on + strandat 3853.490 kb on + strandat 3853.491 kb on - strandat 3853.496 kb on - strandat 3853.565 kb on + strandat 3853.565 kb on + strandat 3853.566 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.035 mg/ml
remove
3,851,197 + +1.1
3,851,365 + -1.2
3,851,406 + +0.2
3,851,406 + -1.2
3,851,408 + -0.1
3,851,409 - -0.5
3,851,409 - +1.1
3,851,409 - -0.2
3,851,409 - +0.2
3,851,466 - -0.6
3,851,554 + +1.1
3,851,577 + -0.8
3,851,578 - -0.6
3,851,611 - +0.7
3,851,648 + +0.0
3,851,654 + +1.3
3,851,746 + +0.1
3,851,746 + +2.0
3,851,747 - -0.8
3,851,747 - +0.3
3,851,908 - +2.1
3,851,925 + +1.0
3,851,925 + -1.1
3,851,926 - -1.1
3,851,973 + -1.2
3,851,984 - +0.3
3,851,985 + +0.6
3,851,985 + +0.4
3,852,151 + +0.0
3,852,152 - +0.8
3,852,152 - +0.1
3,852,154 - +1.5
3,852,154 - -1.0
3,852,157 - -0.8
3,852,210 + -1.2
3,852,210 + +0.5
3,852,227 + +1.4
3,852,243 - CA264_16565 0.12 -1.0
3,852,285 - CA264_16565 0.22 -0.9
3,852,285 - CA264_16565 0.22 -2.4
3,852,285 - CA264_16565 0.22 +0.6
3,852,292 - CA264_16565 0.24 -1.5
3,852,500 - CA264_16565 0.72 -0.4
3,852,547 - CA264_16565 0.83 +0.2
3,852,547 - CA264_16565 0.83 -1.2
3,852,572 + CA264_16565 0.88 +1.5
3,852,593 - +0.0
3,852,720 + -0.8
3,852,814 - CA264_16570 0.21 -0.6
3,852,929 + CA264_16570 0.42 -1.5
3,852,930 - CA264_16570 0.42 -0.5
3,853,011 - CA264_16570 0.56 -1.0
3,853,052 + CA264_16570 0.64 -0.6
3,853,052 + CA264_16570 0.64 -0.7
3,853,070 + CA264_16570 0.67 +1.5
3,853,165 + CA264_16570 0.84 -0.7
3,853,165 + CA264_16570 0.84 -0.5
3,853,255 - +0.1
3,853,259 + +0.1
3,853,259 + -0.5
3,853,260 - -0.1
3,853,320 + -0.5
3,853,359 + -1.1
3,853,361 + -1.1
3,853,361 + -0.6
3,853,362 - -1.2
3,853,365 + -0.4
3,853,365 + -0.7
3,853,365 + +0.8
3,853,365 + +0.3
3,853,366 - +0.1
3,853,367 + +1.1
3,853,367 + -0.1
3,853,368 - -1.7
3,853,400 + -0.9
3,853,490 + +0.1
3,853,490 + -0.4
3,853,491 - -0.6
3,853,496 - -0.4
3,853,565 + -0.7
3,853,565 + +0.4
3,853,566 - -0.4

Or see this region's nucleotide sequence