Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_16230

Experiment: m.b. Cisplatin 0.035 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_16225 and CA264_16230 are separated by 351 nucleotidesCA264_16230 and CA264_16235 are separated by 80 nucleotidesCA264_16235 and CA264_16240 are separated by 121 nucleotides CA264_16225: CA264_16225 - TonB-dependent siderophore receptor, at 3,774,025 to 3,776,454 _16225 CA264_16230: CA264_16230 - protease, at 3,776,806 to 3,777,363 _16230 CA264_16235: CA264_16235 - hypothetical protein, at 3,777,444 to 3,777,986 _16235 CA264_16240: CA264_16240 - hypothetical protein, at 3,778,108 to 3,778,827 _16240 Position (kb) 3776 3777 3778Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 3775.891 kb on + strand, within CA264_16225at 3775.891 kb on + strand, within CA264_16225at 3775.892 kb on - strand, within CA264_16225at 3775.892 kb on - strand, within CA264_16225at 3775.946 kb on + strand, within CA264_16225at 3775.946 kb on + strand, within CA264_16225at 3775.947 kb on - strand, within CA264_16225at 3775.947 kb on - strand, within CA264_16225at 3775.950 kb on + strand, within CA264_16225at 3775.951 kb on - strand, within CA264_16225at 3775.951 kb on - strand, within CA264_16225at 3775.951 kb on - strand, within CA264_16225at 3775.990 kb on - strand, within CA264_16225at 3776.035 kb on - strand, within CA264_16225at 3776.243 kb on + strandat 3776.243 kb on + strandat 3776.244 kb on - strandat 3776.359 kb on + strandat 3776.422 kb on - strandat 3776.422 kb on - strandat 3776.466 kb on + strandat 3776.478 kb on - strandat 3776.479 kb on + strandat 3776.479 kb on + strandat 3776.573 kb on - strandat 3776.585 kb on - strandat 3776.643 kb on - strandat 3776.645 kb on + strandat 3776.645 kb on + strandat 3776.645 kb on + strandat 3776.645 kb on + strandat 3776.646 kb on - strandat 3776.650 kb on - strandat 3776.650 kb on - strandat 3776.652 kb on - strandat 3776.661 kb on - strandat 3776.670 kb on - strandat 3776.765 kb on + strandat 3776.765 kb on + strandat 3776.767 kb on + strandat 3776.768 kb on - strandat 3776.815 kb on - strandat 3776.834 kb on + strandat 3776.834 kb on + strandat 3776.840 kb on + strandat 3776.841 kb on - strandat 3776.843 kb on + strandat 3776.843 kb on + strandat 3776.843 kb on + strandat 3776.846 kb on + strandat 3776.846 kb on + strandat 3776.867 kb on + strand, within CA264_16230at 3776.867 kb on + strand, within CA264_16230at 3776.868 kb on - strand, within CA264_16230at 3776.873 kb on + strand, within CA264_16230at 3776.873 kb on + strand, within CA264_16230at 3776.986 kb on - strand, within CA264_16230at 3776.990 kb on + strand, within CA264_16230at 3777.053 kb on + strand, within CA264_16230at 3777.260 kb on + strand, within CA264_16230at 3777.261 kb on - strand, within CA264_16230at 3777.261 kb on - strand, within CA264_16230at 3777.261 kb on - strand, within CA264_16230at 3777.385 kb on - strandat 3777.390 kb on - strandat 3777.436 kb on + strandat 3777.441 kb on + strandat 3777.441 kb on + strandat 3777.441 kb on + strandat 3777.441 kb on + strandat 3777.442 kb on - strandat 3777.450 kb on + strandat 3777.601 kb on + strand, within CA264_16235at 3777.646 kb on + strand, within CA264_16235at 3777.662 kb on - strand, within CA264_16235at 3777.676 kb on + strand, within CA264_16235at 3777.676 kb on + strand, within CA264_16235at 3777.676 kb on + strand, within CA264_16235at 3777.677 kb on - strand, within CA264_16235at 3777.677 kb on - strand, within CA264_16235at 3777.678 kb on + strand, within CA264_16235at 3777.678 kb on + strand, within CA264_16235at 3777.679 kb on - strand, within CA264_16235at 3777.727 kb on + strand, within CA264_16235at 3777.791 kb on - strand, within CA264_16235at 3777.821 kb on + strand, within CA264_16235at 3777.844 kb on - strand, within CA264_16235at 3777.844 kb on - strand, within CA264_16235at 3777.844 kb on - strand, within CA264_16235at 3777.844 kb on - strand, within CA264_16235at 3777.990 kb on + strandat 3777.991 kb on - strandat 3777.991 kb on - strandat 3777.991 kb on - strandat 3777.991 kb on - strandat 3777.993 kb on + strandat 3778.039 kb on + strandat 3778.165 kb on - strandat 3778.196 kb on + strand, within CA264_16240at 3778.267 kb on + strand, within CA264_16240

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.035 mg/ml
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3,775,891 + CA264_16225 0.77 +1.3
3,775,891 + CA264_16225 0.77 -0.2
3,775,892 - CA264_16225 0.77 +0.8
3,775,892 - CA264_16225 0.77 +1.4
3,775,946 + CA264_16225 0.79 +0.2
3,775,946 + CA264_16225 0.79 +0.6
3,775,947 - CA264_16225 0.79 +1.1
3,775,947 - CA264_16225 0.79 -1.5
3,775,950 + CA264_16225 0.79 -0.7
3,775,951 - CA264_16225 0.79 -0.4
3,775,951 - CA264_16225 0.79 -0.1
3,775,951 - CA264_16225 0.79 -0.7
3,775,990 - CA264_16225 0.81 -0.1
3,776,035 - CA264_16225 0.83 +0.9
3,776,243 + +0.6
3,776,243 + -1.1
3,776,244 - +1.0
3,776,359 + +0.8
3,776,422 - -0.2
3,776,422 - -1.5
3,776,466 + -0.9
3,776,478 - -0.8
3,776,479 + -0.1
3,776,479 + -0.7
3,776,573 - +0.8
3,776,585 - -0.2
3,776,643 - +0.8
3,776,645 + -0.3
3,776,645 + -2.1
3,776,645 + -0.3
3,776,645 + -1.3
3,776,646 - +1.0
3,776,650 - -0.1
3,776,650 - +4.0
3,776,652 - -1.0
3,776,661 - +1.0
3,776,670 - +1.1
3,776,765 + +1.0
3,776,765 + -0.8
3,776,767 + +0.2
3,776,768 - +0.1
3,776,815 - -0.4
3,776,834 + -0.4
3,776,834 + -0.6
3,776,840 + -1.6
3,776,841 - -0.7
3,776,843 + -1.1
3,776,843 + -1.3
3,776,843 + -0.9
3,776,846 + +0.1
3,776,846 + +0.5
3,776,867 + CA264_16230 0.11 -0.9
3,776,867 + CA264_16230 0.11 +1.1
3,776,868 - CA264_16230 0.11 +0.4
3,776,873 + CA264_16230 0.12 +3.0
3,776,873 + CA264_16230 0.12 -0.1
3,776,986 - CA264_16230 0.32 -0.8
3,776,990 + CA264_16230 0.33 +0.4
3,777,053 + CA264_16230 0.44 +0.1
3,777,260 + CA264_16230 0.81 -0.9
3,777,261 - CA264_16230 0.82 +2.3
3,777,261 - CA264_16230 0.82 -0.6
3,777,261 - CA264_16230 0.82 -0.9
3,777,385 - -0.0
3,777,390 - +2.3
3,777,436 + +0.1
3,777,441 + -1.4
3,777,441 + +0.9
3,777,441 + -0.6
3,777,441 + +0.3
3,777,442 - -0.5
3,777,450 + -0.6
3,777,601 + CA264_16235 0.29 +0.1
3,777,646 + CA264_16235 0.37 -0.8
3,777,662 - CA264_16235 0.40 -0.1
3,777,676 + CA264_16235 0.43 -0.6
3,777,676 + CA264_16235 0.43 +0.6
3,777,676 + CA264_16235 0.43 +1.9
3,777,677 - CA264_16235 0.43 -0.6
3,777,677 - CA264_16235 0.43 +0.2
3,777,678 + CA264_16235 0.43 -0.1
3,777,678 + CA264_16235 0.43 +2.7
3,777,679 - CA264_16235 0.43 +0.9
3,777,727 + CA264_16235 0.52 -0.3
3,777,791 - CA264_16235 0.64 -2.2
3,777,821 + CA264_16235 0.69 -0.2
3,777,844 - CA264_16235 0.74 -1.8
3,777,844 - CA264_16235 0.74 -1.1
3,777,844 - CA264_16235 0.74 +1.5
3,777,844 - CA264_16235 0.74 -1.5
3,777,990 + -0.5
3,777,991 - -0.2
3,777,991 - -0.7
3,777,991 - -2.0
3,777,991 - -0.3
3,777,993 + -1.2
3,778,039 + +0.5
3,778,165 - -0.9
3,778,196 + CA264_16240 0.12 -0.7
3,778,267 + CA264_16240 0.22 +0.3

Or see this region's nucleotide sequence