Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_14565

Experiment: m.b. Cisplatin 0.035 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_14555 and CA264_14560 are separated by 59 nucleotidesCA264_14560 and CA264_14565 are separated by 340 nucleotidesCA264_14565 and CA264_14570 are separated by 96 nucleotides CA264_14555: CA264_14555 - glycine cleavage system protein H, at 3,421,623 to 3,422,003 _14555 CA264_14560: CA264_14560 - VanZ family protein, at 3,422,063 to 3,422,395 _14560 CA264_14565: CA264_14565 - hypothetical protein, at 3,422,736 to 3,424,028 _14565 CA264_14570: CA264_14570 - T9SS C-terminal target domain-containing protein, at 3,424,125 to 3,426,755 _14570 Position (kb) 3422 3423 3424 3425Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 3422.016 kb on + strandat 3422.041 kb on - strandat 3422.045 kb on - strandat 3422.207 kb on - strand, within CA264_14560at 3422.251 kb on + strand, within CA264_14560at 3422.331 kb on + strand, within CA264_14560at 3422.332 kb on - strand, within CA264_14560at 3422.374 kb on + strandat 3422.384 kb on + strandat 3422.385 kb on - strandat 3422.417 kb on + strandat 3422.420 kb on - strandat 3422.470 kb on - strandat 3422.480 kb on - strandat 3422.480 kb on - strandat 3422.570 kb on + strandat 3422.571 kb on - strandat 3422.606 kb on + strandat 3422.606 kb on + strandat 3422.607 kb on - strandat 3422.642 kb on + strandat 3422.643 kb on - strandat 3422.648 kb on - strandat 3422.648 kb on - strandat 3422.648 kb on - strandat 3422.649 kb on + strandat 3422.650 kb on - strandat 3422.650 kb on - strandat 3422.724 kb on + strandat 3422.730 kb on - strandat 3422.865 kb on + strandat 3422.866 kb on - strand, within CA264_14565at 3422.867 kb on + strand, within CA264_14565at 3422.867 kb on + strand, within CA264_14565at 3422.868 kb on - strand, within CA264_14565at 3422.898 kb on + strand, within CA264_14565at 3422.899 kb on - strand, within CA264_14565at 3422.949 kb on + strand, within CA264_14565at 3422.986 kb on + strand, within CA264_14565at 3422.986 kb on + strand, within CA264_14565at 3423.001 kb on + strand, within CA264_14565at 3423.099 kb on - strand, within CA264_14565at 3423.172 kb on - strand, within CA264_14565at 3423.217 kb on - strand, within CA264_14565at 3423.254 kb on - strand, within CA264_14565at 3423.284 kb on - strand, within CA264_14565at 3423.302 kb on + strand, within CA264_14565at 3423.302 kb on + strand, within CA264_14565at 3423.303 kb on - strand, within CA264_14565at 3423.303 kb on - strand, within CA264_14565at 3423.303 kb on - strand, within CA264_14565at 3423.452 kb on - strand, within CA264_14565at 3423.496 kb on + strand, within CA264_14565at 3423.496 kb on + strand, within CA264_14565at 3423.499 kb on - strand, within CA264_14565at 3423.499 kb on - strand, within CA264_14565at 3423.561 kb on + strand, within CA264_14565at 3423.602 kb on + strand, within CA264_14565at 3423.634 kb on + strand, within CA264_14565at 3423.645 kb on + strand, within CA264_14565at 3423.695 kb on + strand, within CA264_14565at 3423.751 kb on + strand, within CA264_14565at 3423.850 kb on - strand, within CA264_14565at 3423.930 kb on + strandat 3424.054 kb on + strandat 3424.055 kb on - strandat 3424.056 kb on + strandat 3424.056 kb on + strandat 3424.057 kb on - strandat 3424.077 kb on - strandat 3424.098 kb on + strandat 3424.099 kb on - strandat 3424.099 kb on - strandat 3424.099 kb on - strandat 3424.099 kb on - strandat 3424.108 kb on - strandat 3424.237 kb on + strandat 3424.316 kb on - strandat 3424.327 kb on + strandat 3424.411 kb on + strand, within CA264_14570at 3424.411 kb on + strand, within CA264_14570at 3424.411 kb on + strand, within CA264_14570at 3424.440 kb on + strand, within CA264_14570at 3424.441 kb on - strand, within CA264_14570at 3424.444 kb on + strand, within CA264_14570at 3424.445 kb on - strand, within CA264_14570at 3424.445 kb on - strand, within CA264_14570at 3424.445 kb on - strand, within CA264_14570at 3424.523 kb on - strand, within CA264_14570at 3424.564 kb on + strand, within CA264_14570at 3424.647 kb on + strand, within CA264_14570at 3424.739 kb on + strand, within CA264_14570at 3424.740 kb on - strand, within CA264_14570at 3424.821 kb on + strand, within CA264_14570at 3424.822 kb on - strand, within CA264_14570at 3424.842 kb on + strand, within CA264_14570at 3424.842 kb on + strand, within CA264_14570at 3424.843 kb on - strand, within CA264_14570at 3424.843 kb on - strand, within CA264_14570at 3424.963 kb on + strand, within CA264_14570at 3424.963 kb on + strand, within CA264_14570

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.035 mg/ml
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3,422,016 + -0.8
3,422,041 - -0.8
3,422,045 - -0.4
3,422,207 - CA264_14560 0.43 -0.1
3,422,251 + CA264_14560 0.56 +2.4
3,422,331 + CA264_14560 0.80 +0.0
3,422,332 - CA264_14560 0.81 +0.1
3,422,374 + -0.7
3,422,384 + +5.2
3,422,385 - -0.7
3,422,417 + -2.3
3,422,420 - +0.2
3,422,470 - -1.2
3,422,480 - -2.3
3,422,480 - +0.6
3,422,570 + -0.8
3,422,571 - -1.6
3,422,606 + -0.3
3,422,606 + +1.0
3,422,607 - +1.0
3,422,642 + -1.2
3,422,643 - -1.9
3,422,648 - -0.4
3,422,648 - -2.9
3,422,648 - +0.6
3,422,649 + -0.8
3,422,650 - -2.1
3,422,650 - -2.2
3,422,724 + +0.5
3,422,730 - -1.8
3,422,865 + +0.9
3,422,866 - CA264_14565 0.10 -0.2
3,422,867 + CA264_14565 0.10 +1.9
3,422,867 + CA264_14565 0.10 -0.5
3,422,868 - CA264_14565 0.10 -0.3
3,422,898 + CA264_14565 0.13 -0.3
3,422,899 - CA264_14565 0.13 -1.3
3,422,949 + CA264_14565 0.16 -0.3
3,422,986 + CA264_14565 0.19 +1.0
3,422,986 + CA264_14565 0.19 +0.4
3,423,001 + CA264_14565 0.20 -1.7
3,423,099 - CA264_14565 0.28 -1.3
3,423,172 - CA264_14565 0.34 +1.6
3,423,217 - CA264_14565 0.37 -0.2
3,423,254 - CA264_14565 0.40 -1.0
3,423,284 - CA264_14565 0.42 -0.7
3,423,302 + CA264_14565 0.44 -0.1
3,423,302 + CA264_14565 0.44 -2.6
3,423,303 - CA264_14565 0.44 +1.3
3,423,303 - CA264_14565 0.44 +1.4
3,423,303 - CA264_14565 0.44 -2.3
3,423,452 - CA264_14565 0.55 -0.5
3,423,496 + CA264_14565 0.59 +0.5
3,423,496 + CA264_14565 0.59 +0.5
3,423,499 - CA264_14565 0.59 -1.0
3,423,499 - CA264_14565 0.59 -0.5
3,423,561 + CA264_14565 0.64 -0.9
3,423,602 + CA264_14565 0.67 -1.5
3,423,634 + CA264_14565 0.69 -0.5
3,423,645 + CA264_14565 0.70 -0.7
3,423,695 + CA264_14565 0.74 -1.1
3,423,751 + CA264_14565 0.78 -0.7
3,423,850 - CA264_14565 0.86 +0.1
3,423,930 + -0.5
3,424,054 + +1.4
3,424,055 - +0.4
3,424,056 + +1.6
3,424,056 + -0.3
3,424,057 - -0.9
3,424,077 - -1.8
3,424,098 + +1.0
3,424,099 - -0.6
3,424,099 - -1.5
3,424,099 - -1.5
3,424,099 - +0.3
3,424,108 - -0.4
3,424,237 + -1.5
3,424,316 - +0.8
3,424,327 + +0.2
3,424,411 + CA264_14570 0.11 -0.5
3,424,411 + CA264_14570 0.11 -0.3
3,424,411 + CA264_14570 0.11 -0.9
3,424,440 + CA264_14570 0.12 -0.5
3,424,441 - CA264_14570 0.12 +0.2
3,424,444 + CA264_14570 0.12 -1.1
3,424,445 - CA264_14570 0.12 -0.5
3,424,445 - CA264_14570 0.12 -0.1
3,424,445 - CA264_14570 0.12 -0.9
3,424,523 - CA264_14570 0.15 -1.4
3,424,564 + CA264_14570 0.17 -0.1
3,424,647 + CA264_14570 0.20 -0.5
3,424,739 + CA264_14570 0.23 +0.8
3,424,740 - CA264_14570 0.23 -0.0
3,424,821 + CA264_14570 0.26 -0.6
3,424,822 - CA264_14570 0.26 -1.8
3,424,842 + CA264_14570 0.27 -0.3
3,424,842 + CA264_14570 0.27 -0.2
3,424,843 - CA264_14570 0.27 -1.1
3,424,843 - CA264_14570 0.27 +0.0
3,424,963 + CA264_14570 0.32 +0.2
3,424,963 + CA264_14570 0.32 -0.4

Or see this region's nucleotide sequence