Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_14025

Experiment: m.b. Cisplatin 0.035 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_14020 and CA264_14025 are separated by 130 nucleotidesCA264_14025 and CA264_14030 are separated by 697 nucleotides CA264_14020: CA264_14020 - hypothetical protein, at 3,282,607 to 3,284,424 _14020 CA264_14025: CA264_14025 - mismatch-specific DNA-glycosylase, at 3,284,555 to 3,285,100 _14025 CA264_14030: CA264_14030 - hypothetical protein, at 3,285,798 to 3,286,493 _14030 Position (kb) 3284 3285 3286Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3283.576 kb on - strand, within CA264_14020at 3283.710 kb on - strand, within CA264_14020at 3283.710 kb on - strand, within CA264_14020at 3283.882 kb on + strand, within CA264_14020at 3283.933 kb on - strand, within CA264_14020at 3283.936 kb on + strand, within CA264_14020at 3283.936 kb on + strand, within CA264_14020at 3283.936 kb on + strand, within CA264_14020at 3283.937 kb on - strand, within CA264_14020at 3283.937 kb on - strand, within CA264_14020at 3283.937 kb on - strand, within CA264_14020at 3284.011 kb on + strand, within CA264_14020at 3284.011 kb on + strand, within CA264_14020at 3284.011 kb on + strand, within CA264_14020at 3284.012 kb on - strand, within CA264_14020at 3284.075 kb on - strand, within CA264_14020at 3284.119 kb on + strand, within CA264_14020at 3284.185 kb on + strand, within CA264_14020at 3284.185 kb on + strand, within CA264_14020at 3284.186 kb on - strand, within CA264_14020at 3284.186 kb on - strand, within CA264_14020at 3284.205 kb on + strand, within CA264_14020at 3284.223 kb on - strand, within CA264_14020at 3284.227 kb on - strand, within CA264_14020at 3284.227 kb on - strand, within CA264_14020at 3284.227 kb on - strand, within CA264_14020at 3284.246 kb on - strandat 3284.293 kb on + strandat 3284.296 kb on + strandat 3284.349 kb on + strandat 3284.350 kb on - strandat 3284.430 kb on - strandat 3284.565 kb on + strandat 3284.585 kb on + strandat 3284.648 kb on + strand, within CA264_14025at 3284.648 kb on + strand, within CA264_14025at 3284.648 kb on + strand, within CA264_14025at 3284.648 kb on + strand, within CA264_14025at 3284.648 kb on + strand, within CA264_14025at 3284.649 kb on - strand, within CA264_14025at 3284.649 kb on - strand, within CA264_14025at 3284.755 kb on + strand, within CA264_14025at 3284.854 kb on + strand, within CA264_14025at 3284.854 kb on + strand, within CA264_14025at 3284.863 kb on - strand, within CA264_14025at 3284.970 kb on + strand, within CA264_14025at 3284.988 kb on + strand, within CA264_14025at 3285.093 kb on + strandat 3285.094 kb on - strandat 3285.197 kb on - strandat 3285.265 kb on + strandat 3285.266 kb on - strandat 3285.266 kb on - strandat 3285.277 kb on + strandat 3285.277 kb on + strandat 3285.277 kb on + strandat 3285.277 kb on + strandat 3285.336 kb on + strandat 3285.337 kb on - strandat 3285.339 kb on + strandat 3285.340 kb on - strandat 3285.344 kb on + strandat 3285.344 kb on + strandat 3285.344 kb on + strandat 3285.344 kb on + strandat 3285.345 kb on - strandat 3285.345 kb on - strandat 3285.346 kb on + strandat 3285.347 kb on - strandat 3285.357 kb on + strandat 3285.378 kb on + strandat 3285.378 kb on + strandat 3285.378 kb on + strandat 3285.379 kb on - strandat 3285.379 kb on - strandat 3285.379 kb on - strandat 3285.382 kb on + strandat 3285.382 kb on + strandat 3285.384 kb on + strandat 3285.406 kb on + strandat 3285.410 kb on - strandat 3285.426 kb on + strandat 3285.427 kb on - strandat 3285.442 kb on + strandat 3285.443 kb on - strandat 3285.450 kb on + strandat 3285.457 kb on - strandat 3285.485 kb on + strandat 3285.486 kb on - strandat 3285.490 kb on + strandat 3285.490 kb on + strandat 3285.490 kb on + strandat 3285.491 kb on - strandat 3285.492 kb on + strandat 3285.499 kb on + strandat 3285.553 kb on + strandat 3285.564 kb on + strandat 3285.564 kb on + strandat 3285.564 kb on + strandat 3285.565 kb on - strandat 3285.565 kb on - strandat 3285.581 kb on - strandat 3285.602 kb on + strandat 3285.603 kb on - strandat 3285.616 kb on + strandat 3285.698 kb on - strandat 3285.698 kb on - strandat 3285.700 kb on + strandat 3285.701 kb on - strandat 3285.701 kb on - strandat 3285.705 kb on - strandat 3285.705 kb on - strandat 3285.756 kb on + strandat 3285.756 kb on + strandat 3285.774 kb on + strandat 3285.774 kb on + strandat 3285.785 kb on + strandat 3285.785 kb on + strandat 3285.797 kb on + strandat 3285.798 kb on - strandat 3285.798 kb on - strandat 3285.798 kb on - strandat 3285.944 kb on + strand, within CA264_14030at 3285.944 kb on + strand, within CA264_14030at 3285.944 kb on + strand, within CA264_14030at 3285.945 kb on - strand, within CA264_14030at 3285.945 kb on - strand, within CA264_14030at 3286.010 kb on - strand, within CA264_14030at 3286.075 kb on - strand, within CA264_14030at 3286.091 kb on - strand, within CA264_14030

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.035 mg/ml
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3,283,576 - CA264_14020 0.53 -1.9
3,283,710 - CA264_14020 0.61 +0.4
3,283,710 - CA264_14020 0.61 +0.2
3,283,882 + CA264_14020 0.70 +1.4
3,283,933 - CA264_14020 0.73 +0.5
3,283,936 + CA264_14020 0.73 +1.6
3,283,936 + CA264_14020 0.73 -1.6
3,283,936 + CA264_14020 0.73 +2.1
3,283,937 - CA264_14020 0.73 -0.3
3,283,937 - CA264_14020 0.73 +1.4
3,283,937 - CA264_14020 0.73 -0.8
3,284,011 + CA264_14020 0.77 -0.3
3,284,011 + CA264_14020 0.77 -0.5
3,284,011 + CA264_14020 0.77 -0.8
3,284,012 - CA264_14020 0.77 +0.1
3,284,075 - CA264_14020 0.81 -2.4
3,284,119 + CA264_14020 0.83 -2.0
3,284,185 + CA264_14020 0.87 -0.3
3,284,185 + CA264_14020 0.87 -0.0
3,284,186 - CA264_14020 0.87 -1.1
3,284,186 - CA264_14020 0.87 -0.3
3,284,205 + CA264_14020 0.88 +0.2
3,284,223 - CA264_14020 0.89 +1.9
3,284,227 - CA264_14020 0.89 +1.1
3,284,227 - CA264_14020 0.89 -0.5
3,284,227 - CA264_14020 0.89 -0.9
3,284,246 - -1.0
3,284,293 + -0.3
3,284,296 + -0.7
3,284,349 + -0.1
3,284,350 - -0.1
3,284,430 - -1.4
3,284,565 + -2.1
3,284,585 + -1.7
3,284,648 + CA264_14025 0.17 -1.0
3,284,648 + CA264_14025 0.17 +0.6
3,284,648 + CA264_14025 0.17 -0.5
3,284,648 + CA264_14025 0.17 +0.3
3,284,648 + CA264_14025 0.17 +1.1
3,284,649 - CA264_14025 0.17 +1.7
3,284,649 - CA264_14025 0.17 +0.2
3,284,755 + CA264_14025 0.37 +0.3
3,284,854 + CA264_14025 0.55 -1.1
3,284,854 + CA264_14025 0.55 +0.1
3,284,863 - CA264_14025 0.56 +0.5
3,284,970 + CA264_14025 0.76 +0.8
3,284,988 + CA264_14025 0.79 -1.0
3,285,093 + -2.7
3,285,094 - -0.2
3,285,197 - -1.5
3,285,265 + -0.1
3,285,266 - +0.6
3,285,266 - -0.5
3,285,277 + +1.1
3,285,277 + -1.6
3,285,277 + +0.5
3,285,277 + +0.9
3,285,336 + -0.3
3,285,337 - -1.0
3,285,339 + +1.3
3,285,340 - +0.3
3,285,344 + +0.8
3,285,344 + -1.3
3,285,344 + -0.9
3,285,344 + -0.9
3,285,345 - -0.8
3,285,345 - -0.1
3,285,346 + -0.8
3,285,347 - -0.3
3,285,357 + +0.3
3,285,378 + -0.5
3,285,378 + -0.8
3,285,378 + +0.2
3,285,379 - -0.8
3,285,379 - +2.0
3,285,379 - -2.2
3,285,382 + -2.0
3,285,382 + -1.3
3,285,384 + -0.3
3,285,406 + +0.6
3,285,410 - -1.1
3,285,426 + +0.2
3,285,427 - +0.1
3,285,442 + -0.5
3,285,443 - +0.4
3,285,450 + +0.9
3,285,457 - -1.4
3,285,485 + -1.4
3,285,486 - +1.9
3,285,490 + -0.1
3,285,490 + -0.8
3,285,490 + -0.9
3,285,491 - -0.8
3,285,492 + +0.9
3,285,499 + -0.5
3,285,553 + +0.2
3,285,564 + -0.0
3,285,564 + +0.3
3,285,564 + -1.5
3,285,565 - -0.9
3,285,565 - +0.4
3,285,581 - -1.1
3,285,602 + -0.4
3,285,603 - +0.2
3,285,616 + +2.5
3,285,698 - -0.7
3,285,698 - +0.5
3,285,700 + -0.0
3,285,701 - +0.1
3,285,701 - +0.6
3,285,705 - +0.7
3,285,705 - -0.4
3,285,756 + -0.6
3,285,756 + -2.8
3,285,774 + +0.4
3,285,774 + -0.7
3,285,785 + +0.3
3,285,785 + +1.1
3,285,797 + -1.1
3,285,798 - -1.0
3,285,798 - -0.2
3,285,798 - -0.2
3,285,944 + CA264_14030 0.21 +0.4
3,285,944 + CA264_14030 0.21 +0.4
3,285,944 + CA264_14030 0.21 -1.0
3,285,945 - CA264_14030 0.21 -0.7
3,285,945 - CA264_14030 0.21 +0.9
3,286,010 - CA264_14030 0.30 -2.7
3,286,075 - CA264_14030 0.40 +0.7
3,286,091 - CA264_14030 0.42 -0.5

Or see this region's nucleotide sequence