Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_13935

Experiment: m.b. Cisplatin 0.035 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_13930 and CA264_13935 are separated by 34 nucleotidesCA264_13935 and CA264_13940 are separated by 31 nucleotides CA264_13930: CA264_13930 - alpha-N-arabinofuranosidase, at 3,252,496 to 3,253,599 _13930 CA264_13935: CA264_13935 - glycoside hydrolase 43 family protein, at 3,253,634 to 3,255,361 _13935 CA264_13940: CA264_13940 - glycosyl hydrolase, at 3,255,393 to 3,258,350 _13940 Position (kb) 3253 3254 3255 3256Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3252.636 kb on + strand, within CA264_13930at 3252.636 kb on + strand, within CA264_13930at 3252.636 kb on + strand, within CA264_13930at 3252.636 kb on + strand, within CA264_13930at 3252.637 kb on - strand, within CA264_13930at 3252.637 kb on - strand, within CA264_13930at 3252.695 kb on - strand, within CA264_13930at 3252.770 kb on + strand, within CA264_13930at 3252.779 kb on + strand, within CA264_13930at 3252.779 kb on + strand, within CA264_13930at 3252.783 kb on - strand, within CA264_13930at 3252.794 kb on + strand, within CA264_13930at 3252.794 kb on + strand, within CA264_13930at 3252.794 kb on + strand, within CA264_13930at 3252.795 kb on - strand, within CA264_13930at 3252.798 kb on + strand, within CA264_13930at 3252.798 kb on + strand, within CA264_13930at 3252.798 kb on + strand, within CA264_13930at 3252.798 kb on + strand, within CA264_13930at 3252.855 kb on + strand, within CA264_13930at 3252.864 kb on + strand, within CA264_13930at 3252.864 kb on + strand, within CA264_13930at 3252.869 kb on - strand, within CA264_13930at 3252.933 kb on + strand, within CA264_13930at 3252.965 kb on + strand, within CA264_13930at 3252.983 kb on + strand, within CA264_13930at 3253.024 kb on - strand, within CA264_13930at 3253.024 kb on - strand, within CA264_13930at 3253.034 kb on + strand, within CA264_13930at 3253.034 kb on + strand, within CA264_13930at 3253.040 kb on + strand, within CA264_13930at 3253.040 kb on + strand, within CA264_13930at 3253.041 kb on - strand, within CA264_13930at 3253.041 kb on - strand, within CA264_13930at 3253.044 kb on - strand, within CA264_13930at 3253.078 kb on + strand, within CA264_13930at 3253.078 kb on + strand, within CA264_13930at 3253.079 kb on - strand, within CA264_13930at 3253.083 kb on + strand, within CA264_13930at 3253.083 kb on + strand, within CA264_13930at 3253.083 kb on + strand, within CA264_13930at 3253.084 kb on - strand, within CA264_13930at 3253.084 kb on - strand, within CA264_13930at 3253.085 kb on + strand, within CA264_13930at 3253.085 kb on + strand, within CA264_13930at 3253.086 kb on - strand, within CA264_13930at 3253.174 kb on - strand, within CA264_13930at 3253.199 kb on + strand, within CA264_13930at 3253.200 kb on - strand, within CA264_13930at 3253.203 kb on + strand, within CA264_13930at 3253.203 kb on + strand, within CA264_13930at 3253.204 kb on - strand, within CA264_13930at 3253.292 kb on - strand, within CA264_13930at 3253.292 kb on - strand, within CA264_13930at 3253.381 kb on + strand, within CA264_13930at 3253.381 kb on + strand, within CA264_13930at 3253.397 kb on + strand, within CA264_13930at 3253.404 kb on - strand, within CA264_13930at 3253.446 kb on - strand, within CA264_13930at 3253.471 kb on - strand, within CA264_13930at 3253.471 kb on - strand, within CA264_13930at 3253.541 kb on - strandat 3253.602 kb on + strandat 3253.603 kb on - strandat 3253.608 kb on + strandat 3253.608 kb on + strandat 3253.608 kb on + strandat 3253.609 kb on - strandat 3253.611 kb on - strandat 3253.618 kb on - strandat 3253.618 kb on - strandat 3253.620 kb on + strandat 3253.621 kb on - strandat 3253.651 kb on + strandat 3253.651 kb on + strandat 3253.651 kb on + strandat 3253.652 kb on - strandat 3253.657 kb on + strandat 3253.658 kb on - strandat 3253.692 kb on + strandat 3253.712 kb on - strandat 3253.749 kb on + strandat 3253.749 kb on + strandat 3253.749 kb on + strandat 3253.750 kb on - strandat 3253.750 kb on - strandat 3253.817 kb on - strand, within CA264_13935at 3253.817 kb on - strand, within CA264_13935at 3253.824 kb on - strand, within CA264_13935at 3253.824 kb on - strand, within CA264_13935at 3253.892 kb on + strand, within CA264_13935at 3254.010 kb on + strand, within CA264_13935at 3254.013 kb on + strand, within CA264_13935at 3254.013 kb on + strand, within CA264_13935at 3254.014 kb on - strand, within CA264_13935at 3254.014 kb on - strand, within CA264_13935at 3254.039 kb on + strand, within CA264_13935at 3254.039 kb on + strand, within CA264_13935at 3254.039 kb on + strand, within CA264_13935at 3254.039 kb on + strand, within CA264_13935at 3254.042 kb on - strand, within CA264_13935at 3254.042 kb on - strand, within CA264_13935at 3254.071 kb on + strand, within CA264_13935at 3254.102 kb on + strand, within CA264_13935at 3254.137 kb on + strand, within CA264_13935at 3254.170 kb on + strand, within CA264_13935at 3254.254 kb on + strand, within CA264_13935at 3254.254 kb on + strand, within CA264_13935at 3254.254 kb on + strand, within CA264_13935at 3254.255 kb on - strand, within CA264_13935at 3254.340 kb on + strand, within CA264_13935at 3254.346 kb on + strand, within CA264_13935at 3254.347 kb on - strand, within CA264_13935at 3254.399 kb on - strand, within CA264_13935at 3254.434 kb on - strand, within CA264_13935at 3254.451 kb on + strand, within CA264_13935at 3254.593 kb on + strand, within CA264_13935at 3254.594 kb on - strand, within CA264_13935at 3254.669 kb on + strand, within CA264_13935at 3254.670 kb on - strand, within CA264_13935at 3254.670 kb on - strand, within CA264_13935at 3254.676 kb on + strand, within CA264_13935at 3254.679 kb on + strand, within CA264_13935at 3254.680 kb on - strand, within CA264_13935at 3254.680 kb on - strand, within CA264_13935at 3254.694 kb on + strand, within CA264_13935at 3254.694 kb on + strand, within CA264_13935at 3254.694 kb on + strand, within CA264_13935at 3254.694 kb on + strand, within CA264_13935at 3254.695 kb on - strand, within CA264_13935at 3254.695 kb on - strand, within CA264_13935at 3254.695 kb on - strand, within CA264_13935at 3254.695 kb on - strand, within CA264_13935at 3254.695 kb on - strand, within CA264_13935at 3254.697 kb on - strand, within CA264_13935at 3254.697 kb on - strand, within CA264_13935at 3254.738 kb on + strand, within CA264_13935at 3254.738 kb on + strand, within CA264_13935at 3254.739 kb on - strand, within CA264_13935at 3254.750 kb on + strand, within CA264_13935at 3254.771 kb on + strand, within CA264_13935at 3254.789 kb on - strand, within CA264_13935at 3254.816 kb on - strand, within CA264_13935at 3254.816 kb on - strand, within CA264_13935at 3254.872 kb on - strand, within CA264_13935at 3254.872 kb on - strand, within CA264_13935at 3254.909 kb on + strand, within CA264_13935at 3255.015 kb on + strand, within CA264_13935at 3255.015 kb on + strand, within CA264_13935at 3255.155 kb on - strand, within CA264_13935at 3255.195 kb on + strandat 3255.214 kb on + strandat 3255.218 kb on + strandat 3255.219 kb on - strandat 3255.220 kb on + strandat 3255.220 kb on + strandat 3255.220 kb on + strandat 3255.220 kb on + strandat 3255.220 kb on + strandat 3255.220 kb on + strandat 3255.220 kb on + strandat 3255.220 kb on + strandat 3255.220 kb on + strandat 3255.221 kb on - strandat 3255.221 kb on - strandat 3255.221 kb on - strandat 3255.221 kb on - strandat 3255.234 kb on + strandat 3255.368 kb on - strandat 3255.369 kb on + strandat 3255.394 kb on + strandat 3255.394 kb on + strandat 3255.395 kb on - strandat 3255.395 kb on - strandat 3255.448 kb on + strandat 3255.449 kb on - strandat 3255.452 kb on + strandat 3255.452 kb on + strandat 3255.452 kb on + strandat 3255.453 kb on - strandat 3255.525 kb on + strandat 3255.525 kb on + strandat 3255.526 kb on - strandat 3255.581 kb on + strandat 3255.582 kb on - strandat 3255.691 kb on + strand, within CA264_13940at 3255.691 kb on + strand, within CA264_13940at 3255.691 kb on + strand, within CA264_13940at 3255.692 kb on - strand, within CA264_13940at 3255.692 kb on - strand, within CA264_13940at 3255.696 kb on - strand, within CA264_13940at 3255.714 kb on + strand, within CA264_13940at 3255.727 kb on - strand, within CA264_13940at 3255.758 kb on - strand, within CA264_13940at 3255.880 kb on - strand, within CA264_13940at 3255.880 kb on - strand, within CA264_13940at 3255.912 kb on + strand, within CA264_13940at 3255.913 kb on - strand, within CA264_13940at 3255.916 kb on + strand, within CA264_13940at 3255.917 kb on - strand, within CA264_13940at 3255.931 kb on - strand, within CA264_13940at 3255.979 kb on - strand, within CA264_13940at 3255.979 kb on - strand, within CA264_13940at 3255.987 kb on + strand, within CA264_13940at 3256.019 kb on + strand, within CA264_13940at 3256.020 kb on - strand, within CA264_13940at 3256.022 kb on + strand, within CA264_13940at 3256.143 kb on + strand, within CA264_13940at 3256.144 kb on - strand, within CA264_13940at 3256.150 kb on + strand, within CA264_13940at 3256.150 kb on + strand, within CA264_13940at 3256.151 kb on - strand, within CA264_13940at 3256.151 kb on - strand, within CA264_13940at 3256.154 kb on + strand, within CA264_13940at 3256.190 kb on - strand, within CA264_13940at 3256.192 kb on + strand, within CA264_13940at 3256.215 kb on + strand, within CA264_13940at 3256.272 kb on + strand, within CA264_13940at 3256.272 kb on + strand, within CA264_13940at 3256.273 kb on - strand, within CA264_13940at 3256.329 kb on + strand, within CA264_13940at 3256.330 kb on - strand, within CA264_13940at 3256.358 kb on + strand, within CA264_13940at 3256.358 kb on + strand, within CA264_13940at 3256.358 kb on + strand, within CA264_13940at 3256.359 kb on - strand, within CA264_13940at 3256.359 kb on - strand, within CA264_13940at 3256.360 kb on + strand, within CA264_13940at 3256.360 kb on + strand, within CA264_13940

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.035 mg/ml
remove
3,252,636 + CA264_13930 0.13 +0.4
3,252,636 + CA264_13930 0.13 -1.0
3,252,636 + CA264_13930 0.13 +0.7
3,252,636 + CA264_13930 0.13 +0.3
3,252,637 - CA264_13930 0.13 -0.6
3,252,637 - CA264_13930 0.13 -0.3
3,252,695 - CA264_13930 0.18 -0.4
3,252,770 + CA264_13930 0.25 -0.9
3,252,779 + CA264_13930 0.26 -0.0
3,252,779 + CA264_13930 0.26 -0.2
3,252,783 - CA264_13930 0.26 -1.4
3,252,794 + CA264_13930 0.27 +3.3
3,252,794 + CA264_13930 0.27 +2.3
3,252,794 + CA264_13930 0.27 +0.5
3,252,795 - CA264_13930 0.27 +0.2
3,252,798 + CA264_13930 0.27 -1.1
3,252,798 + CA264_13930 0.27 -0.8
3,252,798 + CA264_13930 0.27 -0.2
3,252,798 + CA264_13930 0.27 -0.9
3,252,855 + CA264_13930 0.33 +0.1
3,252,864 + CA264_13930 0.33 +0.5
3,252,864 + CA264_13930 0.33 +0.1
3,252,869 - CA264_13930 0.34 -0.2
3,252,933 + CA264_13930 0.40 -1.4
3,252,965 + CA264_13930 0.42 -0.5
3,252,983 + CA264_13930 0.44 +1.1
3,253,024 - CA264_13930 0.48 -0.7
3,253,024 - CA264_13930 0.48 -0.5
3,253,034 + CA264_13930 0.49 -0.7
3,253,034 + CA264_13930 0.49 +3.0
3,253,040 + CA264_13930 0.49 -1.2
3,253,040 + CA264_13930 0.49 -0.6
3,253,041 - CA264_13930 0.49 -0.2
3,253,041 - CA264_13930 0.49 -0.2
3,253,044 - CA264_13930 0.50 +1.0
3,253,078 + CA264_13930 0.53 +0.3
3,253,078 + CA264_13930 0.53 -1.0
3,253,079 - CA264_13930 0.53 -0.3
3,253,083 + CA264_13930 0.53 -0.5
3,253,083 + CA264_13930 0.53 -0.6
3,253,083 + CA264_13930 0.53 -1.7
3,253,084 - CA264_13930 0.53 -1.0
3,253,084 - CA264_13930 0.53 -0.2
3,253,085 + CA264_13930 0.53 -0.2
3,253,085 + CA264_13930 0.53 -1.6
3,253,086 - CA264_13930 0.53 -1.6
3,253,174 - CA264_13930 0.61 -1.3
3,253,199 + CA264_13930 0.64 +1.0
3,253,200 - CA264_13930 0.64 -0.1
3,253,203 + CA264_13930 0.64 -0.2
3,253,203 + CA264_13930 0.64 -0.1
3,253,204 - CA264_13930 0.64 +0.3
3,253,292 - CA264_13930 0.72 -0.2
3,253,292 - CA264_13930 0.72 -0.9
3,253,381 + CA264_13930 0.80 +1.5
3,253,381 + CA264_13930 0.80 +0.5
3,253,397 + CA264_13930 0.82 -1.2
3,253,404 - CA264_13930 0.82 -0.4
3,253,446 - CA264_13930 0.86 +0.5
3,253,471 - CA264_13930 0.88 +0.1
3,253,471 - CA264_13930 0.88 +0.5
3,253,541 - -0.9
3,253,602 + +1.9
3,253,603 - +0.5
3,253,608 + -0.4
3,253,608 + -0.5
3,253,608 + -2.1
3,253,609 - -0.6
3,253,611 - -0.6
3,253,618 - -0.1
3,253,618 - -1.5
3,253,620 + -0.9
3,253,621 - +1.1
3,253,651 + +0.3
3,253,651 + -2.6
3,253,651 + -1.4
3,253,652 - -1.3
3,253,657 + -0.9
3,253,658 - -0.4
3,253,692 + -0.0
3,253,712 - -0.4
3,253,749 + -1.7
3,253,749 + +1.9
3,253,749 + +0.9
3,253,750 - +2.4
3,253,750 - +0.5
3,253,817 - CA264_13935 0.11 +1.5
3,253,817 - CA264_13935 0.11 -2.9
3,253,824 - CA264_13935 0.11 +0.5
3,253,824 - CA264_13935 0.11 -0.7
3,253,892 + CA264_13935 0.15 -0.5
3,254,010 + CA264_13935 0.22 -0.2
3,254,013 + CA264_13935 0.22 -0.5
3,254,013 + CA264_13935 0.22 +1.6
3,254,014 - CA264_13935 0.22 +1.5
3,254,014 - CA264_13935 0.22 -1.4
3,254,039 + CA264_13935 0.23 -1.0
3,254,039 + CA264_13935 0.23 -1.2
3,254,039 + CA264_13935 0.23 +1.0
3,254,039 + CA264_13935 0.23 +4.1
3,254,042 - CA264_13935 0.24 -0.7
3,254,042 - CA264_13935 0.24 -0.9
3,254,071 + CA264_13935 0.25 -0.3
3,254,102 + CA264_13935 0.27 -0.9
3,254,137 + CA264_13935 0.29 -0.7
3,254,170 + CA264_13935 0.31 +0.3
3,254,254 + CA264_13935 0.36 -0.8
3,254,254 + CA264_13935 0.36 +0.4
3,254,254 + CA264_13935 0.36 +0.5
3,254,255 - CA264_13935 0.36 -0.7
3,254,340 + CA264_13935 0.41 -0.6
3,254,346 + CA264_13935 0.41 -1.1
3,254,347 - CA264_13935 0.41 -0.5
3,254,399 - CA264_13935 0.44 +2.0
3,254,434 - CA264_13935 0.46 +0.0
3,254,451 + CA264_13935 0.47 +0.2
3,254,593 + CA264_13935 0.55 -1.2
3,254,594 - CA264_13935 0.56 -1.0
3,254,669 + CA264_13935 0.60 -0.9
3,254,670 - CA264_13935 0.60 +0.8
3,254,670 - CA264_13935 0.60 +0.0
3,254,676 + CA264_13935 0.60 -1.8
3,254,679 + CA264_13935 0.60 -1.4
3,254,680 - CA264_13935 0.61 +1.5
3,254,680 - CA264_13935 0.61 -1.5
3,254,694 + CA264_13935 0.61 +0.3
3,254,694 + CA264_13935 0.61 -1.1
3,254,694 + CA264_13935 0.61 +1.3
3,254,694 + CA264_13935 0.61 +1.5
3,254,695 - CA264_13935 0.61 -0.5
3,254,695 - CA264_13935 0.61 +0.4
3,254,695 - CA264_13935 0.61 -1.9
3,254,695 - CA264_13935 0.61 -0.3
3,254,695 - CA264_13935 0.61 -1.8
3,254,697 - CA264_13935 0.62 +0.0
3,254,697 - CA264_13935 0.62 -0.0
3,254,738 + CA264_13935 0.64 -0.1
3,254,738 + CA264_13935 0.64 +0.6
3,254,739 - CA264_13935 0.64 -0.8
3,254,750 + CA264_13935 0.65 -1.0
3,254,771 + CA264_13935 0.66 -0.3
3,254,789 - CA264_13935 0.67 -1.3
3,254,816 - CA264_13935 0.68 -0.7
3,254,816 - CA264_13935 0.68 +0.5
3,254,872 - CA264_13935 0.72 -2.4
3,254,872 - CA264_13935 0.72 -2.0
3,254,909 + CA264_13935 0.74 -2.3
3,255,015 + CA264_13935 0.80 -1.5
3,255,015 + CA264_13935 0.80 -1.6
3,255,155 - CA264_13935 0.88 -1.3
3,255,195 + +0.9
3,255,214 + +0.3
3,255,218 + -0.6
3,255,219 - +0.7
3,255,220 + -0.5
3,255,220 + +0.4
3,255,220 + +1.5
3,255,220 + -0.4
3,255,220 + -3.3
3,255,220 + +1.2
3,255,220 + +1.4
3,255,220 + -1.6
3,255,220 + -1.9
3,255,221 - -2.4
3,255,221 - -0.8
3,255,221 - +0.3
3,255,221 - +0.5
3,255,234 + +1.1
3,255,368 - -0.4
3,255,369 + -2.9
3,255,394 + +0.3
3,255,394 + -0.6
3,255,395 - +0.1
3,255,395 - -1.6
3,255,448 + -0.4
3,255,449 - -1.6
3,255,452 + -0.5
3,255,452 + -1.4
3,255,452 + -0.5
3,255,453 - -0.0
3,255,525 + +0.3
3,255,525 + -0.5
3,255,526 - +0.9
3,255,581 + +0.5
3,255,582 - +0.2
3,255,691 + CA264_13940 0.10 -1.4
3,255,691 + CA264_13940 0.10 -0.6
3,255,691 + CA264_13940 0.10 +0.3
3,255,692 - CA264_13940 0.10 +1.6
3,255,692 - CA264_13940 0.10 +1.0
3,255,696 - CA264_13940 0.10 -2.4
3,255,714 + CA264_13940 0.11 +2.5
3,255,727 - CA264_13940 0.11 +0.9
3,255,758 - CA264_13940 0.12 -0.3
3,255,880 - CA264_13940 0.16 -0.1
3,255,880 - CA264_13940 0.16 -1.0
3,255,912 + CA264_13940 0.18 -0.9
3,255,913 - CA264_13940 0.18 -0.1
3,255,916 + CA264_13940 0.18 -0.7
3,255,917 - CA264_13940 0.18 -0.5
3,255,931 - CA264_13940 0.18 -2.1
3,255,979 - CA264_13940 0.20 -0.2
3,255,979 - CA264_13940 0.20 +3.1
3,255,987 + CA264_13940 0.20 -0.5
3,256,019 + CA264_13940 0.21 -0.5
3,256,020 - CA264_13940 0.21 +0.7
3,256,022 + CA264_13940 0.21 -0.5
3,256,143 + CA264_13940 0.25 -2.2
3,256,144 - CA264_13940 0.25 +0.9
3,256,150 + CA264_13940 0.26 -1.6
3,256,150 + CA264_13940 0.26 -0.6
3,256,151 - CA264_13940 0.26 +1.0
3,256,151 - CA264_13940 0.26 -0.5
3,256,154 + CA264_13940 0.26 +0.5
3,256,190 - CA264_13940 0.27 +0.3
3,256,192 + CA264_13940 0.27 -0.1
3,256,215 + CA264_13940 0.28 -0.8
3,256,272 + CA264_13940 0.30 -1.0
3,256,272 + CA264_13940 0.30 -1.5
3,256,273 - CA264_13940 0.30 -0.8
3,256,329 + CA264_13940 0.32 -0.5
3,256,330 - CA264_13940 0.32 -0.5
3,256,358 + CA264_13940 0.33 -1.1
3,256,358 + CA264_13940 0.33 +1.1
3,256,358 + CA264_13940 0.33 +1.1
3,256,359 - CA264_13940 0.33 -0.6
3,256,359 - CA264_13940 0.33 +1.1
3,256,360 + CA264_13940 0.33 -1.1
3,256,360 + CA264_13940 0.33 -0.7

Or see this region's nucleotide sequence