Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_13470

Experiment: m.b. Cisplatin 0.035 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_13460 and CA264_13465 are separated by 75 nucleotidesCA264_13465 and CA264_13470 are separated by 59 nucleotidesCA264_13470 and CA264_13475 are separated by 18 nucleotides CA264_13460: CA264_13460 - hypothetical protein, at 3,144,935 to 3,145,369 _13460 CA264_13465: CA264_13465 - hypothetical protein, at 3,145,445 to 3,146,212 _13465 CA264_13470: CA264_13470 - cysteine synthase A, at 3,146,272 to 3,147,189 _13470 CA264_13475: CA264_13475 - serine acetyltransferase, at 3,147,208 to 3,148,041 _13475 Position (kb) 3146 3147 3148Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 3145.368 kb on - strandat 3145.408 kb on + strandat 3145.536 kb on + strand, within CA264_13465at 3145.537 kb on - strand, within CA264_13465at 3145.611 kb on + strand, within CA264_13465at 3145.656 kb on - strand, within CA264_13465at 3145.806 kb on + strand, within CA264_13465at 3145.807 kb on - strand, within CA264_13465at 3145.875 kb on - strand, within CA264_13465at 3145.887 kb on - strand, within CA264_13465at 3145.887 kb on - strand, within CA264_13465at 3146.028 kb on - strand, within CA264_13465at 3146.028 kb on - strand, within CA264_13465at 3146.129 kb on + strand, within CA264_13465at 3146.130 kb on - strand, within CA264_13465at 3146.273 kb on + strandat 3146.273 kb on + strandat 3146.503 kb on - strand, within CA264_13470at 3146.732 kb on - strand, within CA264_13470at 3148.058 kb on + strandat 3148.078 kb on + strandat 3148.108 kb on - strandat 3148.113 kb on - strandat 3148.133 kb on + strandat 3148.133 kb on + strandat 3148.134 kb on - strandat 3148.175 kb on + strandat 3148.184 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.035 mg/ml
remove
3,145,368 - +1.2
3,145,408 + -0.4
3,145,536 + CA264_13465 0.12 -1.4
3,145,537 - CA264_13465 0.12 -0.3
3,145,611 + CA264_13465 0.22 -0.6
3,145,656 - CA264_13465 0.27 -1.3
3,145,806 + CA264_13465 0.47 +1.1
3,145,807 - CA264_13465 0.47 -2.2
3,145,875 - CA264_13465 0.56 +0.1
3,145,887 - CA264_13465 0.58 -1.7
3,145,887 - CA264_13465 0.58 -1.9
3,146,028 - CA264_13465 0.76 +1.3
3,146,028 - CA264_13465 0.76 -0.3
3,146,129 + CA264_13465 0.89 +1.5
3,146,130 - CA264_13465 0.89 -0.4
3,146,273 + -0.7
3,146,273 + +0.6
3,146,503 - CA264_13470 0.25 +0.2
3,146,732 - CA264_13470 0.50 -2.2
3,148,058 + +1.5
3,148,078 + -1.0
3,148,108 - -0.8
3,148,113 - -0.5
3,148,133 + +3.9
3,148,133 + -0.5
3,148,134 - -0.6
3,148,175 + -1.2
3,148,184 - -1.0

Or see this region's nucleotide sequence