Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_13000

Experiment: m.b. Cisplatin 0.035 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_12990 and CA264_12995 are separated by 182 nucleotidesCA264_12995 and CA264_13000 are separated by 154 nucleotidesCA264_13000 and CA264_13005 are separated by 114 nucleotides CA264_12990: CA264_12990 - ferritin, at 3,029,234 to 3,029,770 _12990 CA264_12995: CA264_12995 - hypothetical protein, at 3,029,953 to 3,030,306 _12995 CA264_13000: CA264_13000 - cupin, at 3,030,461 to 3,030,835 _13000 CA264_13005: CA264_13005 - hypothetical protein, at 3,030,950 to 3,031,996 _13005 Position (kb) 3030 3031Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3029.525 kb on + strand, within CA264_12990at 3029.526 kb on - strand, within CA264_12990at 3029.615 kb on - strand, within CA264_12990at 3029.673 kb on + strand, within CA264_12990at 3029.673 kb on + strand, within CA264_12990at 3029.673 kb on + strand, within CA264_12990at 3029.674 kb on - strand, within CA264_12990at 3029.726 kb on + strandat 3029.726 kb on + strandat 3029.727 kb on - strandat 3029.728 kb on + strandat 3029.750 kb on - strandat 3029.771 kb on - strandat 3029.785 kb on - strandat 3029.788 kb on + strandat 3029.791 kb on + strandat 3029.792 kb on - strandat 3029.792 kb on - strandat 3029.831 kb on - strandat 3029.831 kb on - strandat 3029.839 kb on - strandat 3029.841 kb on - strandat 3029.841 kb on - strandat 3029.939 kb on - strandat 3030.006 kb on + strand, within CA264_12995at 3030.007 kb on - strand, within CA264_12995at 3030.065 kb on + strand, within CA264_12995at 3030.065 kb on + strand, within CA264_12995at 3030.065 kb on + strand, within CA264_12995at 3030.066 kb on - strand, within CA264_12995at 3030.066 kb on - strand, within CA264_12995at 3030.145 kb on - strand, within CA264_12995at 3030.250 kb on + strand, within CA264_12995at 3030.250 kb on + strand, within CA264_12995at 3030.318 kb on + strandat 3030.318 kb on + strandat 3030.319 kb on - strandat 3030.357 kb on + strandat 3030.388 kb on - strandat 3030.474 kb on + strandat 3030.475 kb on - strandat 3030.475 kb on - strandat 3030.562 kb on + strand, within CA264_13000at 3030.857 kb on - strandat 3030.892 kb on + strandat 3030.895 kb on - strandat 3030.895 kb on - strandat 3030.895 kb on - strandat 3030.895 kb on - strandat 3030.895 kb on - strandat 3030.895 kb on - strandat 3030.898 kb on + strandat 3030.899 kb on - strandat 3030.899 kb on - strandat 3030.899 kb on - strandat 3030.901 kb on - strandat 3030.901 kb on - strandat 3030.904 kb on + strandat 3030.904 kb on + strandat 3030.905 kb on - strandat 3030.905 kb on - strandat 3030.905 kb on - strandat 3030.906 kb on + strandat 3030.906 kb on + strandat 3030.906 kb on + strandat 3030.906 kb on + strandat 3030.907 kb on - strandat 3030.907 kb on - strandat 3030.907 kb on - strandat 3030.910 kb on + strandat 3030.912 kb on + strandat 3030.912 kb on + strandat 3030.912 kb on + strandat 3030.913 kb on - strandat 3030.916 kb on + strandat 3030.916 kb on + strandat 3030.916 kb on + strandat 3030.916 kb on + strandat 3030.916 kb on + strandat 3030.917 kb on - strandat 3030.917 kb on - strandat 3030.917 kb on - strandat 3030.918 kb on + strandat 3030.918 kb on + strandat 3030.922 kb on + strandat 3030.922 kb on + strandat 3030.924 kb on + strandat 3031.079 kb on + strand, within CA264_13005at 3031.282 kb on - strand, within CA264_13005at 3031.377 kb on + strand, within CA264_13005at 3031.381 kb on + strand, within CA264_13005at 3031.381 kb on + strand, within CA264_13005at 3031.381 kb on + strand, within CA264_13005at 3031.383 kb on + strand, within CA264_13005at 3031.383 kb on + strand, within CA264_13005at 3031.383 kb on + strand, within CA264_13005at 3031.384 kb on - strand, within CA264_13005at 3031.434 kb on - strand, within CA264_13005at 3031.520 kb on - strand, within CA264_13005at 3031.520 kb on - strand, within CA264_13005at 3031.520 kb on - strand, within CA264_13005at 3031.548 kb on - strand, within CA264_13005at 3031.579 kb on + strand, within CA264_13005at 3031.580 kb on - strand, within CA264_13005at 3031.580 kb on - strand, within CA264_13005at 3031.642 kb on - strand, within CA264_13005at 3031.642 kb on - strand, within CA264_13005at 3031.722 kb on + strand, within CA264_13005at 3031.722 kb on + strand, within CA264_13005at 3031.723 kb on - strand, within CA264_13005at 3031.744 kb on + strand, within CA264_13005at 3031.744 kb on + strand, within CA264_13005at 3031.819 kb on - strand, within CA264_13005

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.035 mg/ml
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3,029,525 + CA264_12990 0.54 -0.7
3,029,526 - CA264_12990 0.54 +0.4
3,029,615 - CA264_12990 0.71 +0.4
3,029,673 + CA264_12990 0.82 +0.4
3,029,673 + CA264_12990 0.82 -0.9
3,029,673 + CA264_12990 0.82 +0.1
3,029,674 - CA264_12990 0.82 -1.3
3,029,726 + -2.9
3,029,726 + -1.7
3,029,727 - -0.6
3,029,728 + +2.1
3,029,750 - +1.0
3,029,771 - +1.9
3,029,785 - -0.5
3,029,788 + -3.2
3,029,791 + -1.3
3,029,792 - -0.9
3,029,792 - -0.3
3,029,831 - -0.1
3,029,831 - -0.1
3,029,839 - -0.8
3,029,841 - +1.1
3,029,841 - -0.9
3,029,939 - +0.7
3,030,006 + CA264_12995 0.15 -0.6
3,030,007 - CA264_12995 0.15 -1.1
3,030,065 + CA264_12995 0.32 +0.2
3,030,065 + CA264_12995 0.32 +0.5
3,030,065 + CA264_12995 0.32 -1.3
3,030,066 - CA264_12995 0.32 -0.7
3,030,066 - CA264_12995 0.32 -1.0
3,030,145 - CA264_12995 0.54 +0.2
3,030,250 + CA264_12995 0.84 -0.4
3,030,250 + CA264_12995 0.84 +3.1
3,030,318 + +0.8
3,030,318 + +0.2
3,030,319 - -1.3
3,030,357 + +1.2
3,030,388 - -0.3
3,030,474 + +0.5
3,030,475 - -0.5
3,030,475 - -0.8
3,030,562 + CA264_13000 0.27 -1.5
3,030,857 - -0.5
3,030,892 + -1.2
3,030,895 - -0.1
3,030,895 - -2.0
3,030,895 - -2.0
3,030,895 - -0.2
3,030,895 - +0.6
3,030,895 - -0.2
3,030,898 + -0.9
3,030,899 - -0.3
3,030,899 - +0.1
3,030,899 - -0.2
3,030,901 - -0.1
3,030,901 - -0.4
3,030,904 + -0.8
3,030,904 + +1.1
3,030,905 - -1.4
3,030,905 - -0.9
3,030,905 - +1.4
3,030,906 + +0.1
3,030,906 + +1.1
3,030,906 + -1.2
3,030,906 + +0.6
3,030,907 - -0.8
3,030,907 - +2.6
3,030,907 - -1.3
3,030,910 + -0.2
3,030,912 + -0.7
3,030,912 + -1.4
3,030,912 + +0.6
3,030,913 - -2.0
3,030,916 + -0.7
3,030,916 + -1.3
3,030,916 + -0.5
3,030,916 + -1.0
3,030,916 + -0.6
3,030,917 - +0.5
3,030,917 - -0.8
3,030,917 - -0.6
3,030,918 + -1.5
3,030,918 + -0.3
3,030,922 + -1.3
3,030,922 + +2.7
3,030,924 + -0.3
3,031,079 + CA264_13005 0.12 -1.5
3,031,282 - CA264_13005 0.32 -0.7
3,031,377 + CA264_13005 0.41 -0.7
3,031,381 + CA264_13005 0.41 -1.2
3,031,381 + CA264_13005 0.41 -0.9
3,031,381 + CA264_13005 0.41 +0.9
3,031,383 + CA264_13005 0.41 -1.2
3,031,383 + CA264_13005 0.41 -1.4
3,031,383 + CA264_13005 0.41 +0.3
3,031,384 - CA264_13005 0.41 -0.0
3,031,434 - CA264_13005 0.46 +0.1
3,031,520 - CA264_13005 0.54 -0.2
3,031,520 - CA264_13005 0.54 +1.4
3,031,520 - CA264_13005 0.54 +0.3
3,031,548 - CA264_13005 0.57 -1.5
3,031,579 + CA264_13005 0.60 -0.2
3,031,580 - CA264_13005 0.60 +0.7
3,031,580 - CA264_13005 0.60 -0.1
3,031,642 - CA264_13005 0.66 -0.1
3,031,642 - CA264_13005 0.66 +0.2
3,031,722 + CA264_13005 0.74 -0.9
3,031,722 + CA264_13005 0.74 +0.6
3,031,723 - CA264_13005 0.74 +1.3
3,031,744 + CA264_13005 0.76 +1.5
3,031,744 + CA264_13005 0.76 +0.2
3,031,819 - CA264_13005 0.83 -0.4

Or see this region's nucleotide sequence