Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_12975

Experiment: m.b. Cisplatin 0.035 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_12965 and CA264_12970 overlap by 12 nucleotidesCA264_12970 and CA264_12975 are separated by 167 nucleotidesCA264_12975 and CA264_12980 are separated by 289 nucleotides CA264_12965: CA264_12965 - hypothetical protein, at 3,023,045 to 3,023,488 _12965 CA264_12970: CA264_12970 - hypothetical protein, at 3,023,477 to 3,024,163 _12970 CA264_12975: CA264_12975 - S9 family peptidase, at 3,024,331 to 3,026,796 _12975 CA264_12980: CA264_12980 - peptidase M28, at 3,027,086 to 3,028,642 _12980 Position (kb) 3024 3025 3026 3027Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 3023.443 kb on - strand, within CA264_12965at 3023.443 kb on - strand, within CA264_12965at 3023.486 kb on + strandat 3023.497 kb on + strandat 3023.498 kb on - strandat 3023.500 kb on - strandat 3023.538 kb on + strandat 3023.539 kb on - strandat 3023.540 kb on + strandat 3023.540 kb on + strandat 3023.540 kb on + strandat 3023.547 kb on + strand, within CA264_12970at 3023.547 kb on + strand, within CA264_12970at 3023.571 kb on - strand, within CA264_12970at 3023.575 kb on + strand, within CA264_12970at 3023.838 kb on + strand, within CA264_12970at 3023.925 kb on + strand, within CA264_12970at 3024.024 kb on - strand, within CA264_12970at 3024.025 kb on + strand, within CA264_12970at 3024.025 kb on + strand, within CA264_12970at 3024.026 kb on - strand, within CA264_12970at 3024.026 kb on - strand, within CA264_12970at 3024.062 kb on + strand, within CA264_12970at 3024.063 kb on - strand, within CA264_12970at 3024.063 kb on - strand, within CA264_12970at 3024.119 kb on - strandat 3024.151 kb on + strandat 3024.151 kb on + strandat 3024.179 kb on + strandat 3024.192 kb on - strandat 3024.269 kb on + strandat 3024.270 kb on - strandat 3024.270 kb on - strandat 3024.270 kb on - strandat 3024.276 kb on - strandat 3024.356 kb on + strandat 3024.356 kb on + strandat 3024.356 kb on + strandat 3024.357 kb on - strandat 3024.596 kb on + strand, within CA264_12975at 3024.596 kb on + strand, within CA264_12975at 3024.597 kb on - strand, within CA264_12975at 3024.598 kb on + strand, within CA264_12975at 3024.618 kb on - strand, within CA264_12975at 3024.666 kb on - strand, within CA264_12975at 3024.666 kb on - strand, within CA264_12975at 3024.775 kb on + strand, within CA264_12975at 3024.776 kb on - strand, within CA264_12975at 3024.776 kb on - strand, within CA264_12975at 3024.778 kb on + strand, within CA264_12975at 3024.778 kb on + strand, within CA264_12975at 3024.779 kb on - strand, within CA264_12975at 3024.839 kb on + strand, within CA264_12975at 3024.839 kb on + strand, within CA264_12975at 3024.839 kb on + strand, within CA264_12975at 3024.839 kb on + strand, within CA264_12975at 3024.905 kb on + strand, within CA264_12975at 3025.208 kb on + strand, within CA264_12975at 3025.209 kb on - strand, within CA264_12975at 3025.289 kb on + strand, within CA264_12975at 3025.442 kb on + strand, within CA264_12975at 3025.481 kb on + strand, within CA264_12975at 3025.482 kb on - strand, within CA264_12975at 3025.639 kb on - strand, within CA264_12975at 3025.686 kb on - strand, within CA264_12975at 3025.781 kb on + strand, within CA264_12975at 3025.859 kb on - strand, within CA264_12975at 3025.904 kb on + strand, within CA264_12975at 3025.904 kb on + strand, within CA264_12975at 3025.905 kb on - strand, within CA264_12975at 3025.905 kb on - strand, within CA264_12975at 3025.928 kb on + strand, within CA264_12975at 3025.983 kb on + strand, within CA264_12975at 3026.036 kb on - strand, within CA264_12975at 3026.043 kb on + strand, within CA264_12975at 3026.043 kb on + strand, within CA264_12975at 3026.060 kb on + strand, within CA264_12975at 3026.060 kb on + strand, within CA264_12975at 3026.060 kb on + strand, within CA264_12975at 3026.061 kb on - strand, within CA264_12975at 3026.061 kb on - strand, within CA264_12975at 3026.061 kb on - strand, within CA264_12975at 3026.213 kb on - strand, within CA264_12975at 3026.213 kb on - strand, within CA264_12975at 3026.262 kb on - strand, within CA264_12975at 3026.356 kb on - strand, within CA264_12975at 3026.426 kb on - strand, within CA264_12975at 3026.449 kb on + strand, within CA264_12975at 3026.474 kb on + strand, within CA264_12975at 3026.474 kb on + strand, within CA264_12975at 3026.481 kb on - strand, within CA264_12975at 3026.612 kb on - strandat 3026.644 kb on - strandat 3026.811 kb on + strandat 3026.858 kb on + strandat 3026.861 kb on - strandat 3026.861 kb on - strandat 3026.875 kb on + strandat 3026.908 kb on + strandat 3026.986 kb on - strandat 3027.077 kb on + strandat 3027.389 kb on + strand, within CA264_12980at 3027.389 kb on + strand, within CA264_12980at 3027.521 kb on + strand, within CA264_12980at 3027.522 kb on - strand, within CA264_12980at 3027.549 kb on + strand, within CA264_12980at 3027.549 kb on + strand, within CA264_12980at 3027.549 kb on + strand, within CA264_12980at 3027.549 kb on + strand, within CA264_12980at 3027.549 kb on + strand, within CA264_12980at 3027.550 kb on - strand, within CA264_12980at 3027.692 kb on + strand, within CA264_12980at 3027.714 kb on + strand, within CA264_12980at 3027.714 kb on + strand, within CA264_12980at 3027.715 kb on - strand, within CA264_12980

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.035 mg/ml
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3,023,443 - CA264_12965 0.90 +1.0
3,023,443 - CA264_12965 0.90 -0.7
3,023,486 + +1.4
3,023,497 + +0.9
3,023,498 - +2.5
3,023,500 - +0.5
3,023,538 + +0.1
3,023,539 - -0.3
3,023,540 + +0.6
3,023,540 + +0.9
3,023,540 + -0.0
3,023,547 + CA264_12970 0.10 -1.4
3,023,547 + CA264_12970 0.10 -0.4
3,023,571 - CA264_12970 0.14 +2.2
3,023,575 + CA264_12970 0.14 -0.6
3,023,838 + CA264_12970 0.53 +1.0
3,023,925 + CA264_12970 0.65 +2.4
3,024,024 - CA264_12970 0.80 -0.9
3,024,025 + CA264_12970 0.80 -1.8
3,024,025 + CA264_12970 0.80 -1.2
3,024,026 - CA264_12970 0.80 +1.2
3,024,026 - CA264_12970 0.80 -0.9
3,024,062 + CA264_12970 0.85 +0.3
3,024,063 - CA264_12970 0.85 +1.0
3,024,063 - CA264_12970 0.85 +1.0
3,024,119 - -1.1
3,024,151 + -1.9
3,024,151 + -0.6
3,024,179 + -1.5
3,024,192 - +0.7
3,024,269 + -0.5
3,024,270 - -0.3
3,024,270 - -0.3
3,024,270 - +1.1
3,024,276 - +0.5
3,024,356 + -0.1
3,024,356 + +3.0
3,024,356 + +0.3
3,024,357 - -0.7
3,024,596 + CA264_12975 0.11 +0.5
3,024,596 + CA264_12975 0.11 -0.3
3,024,597 - CA264_12975 0.11 -0.2
3,024,598 + CA264_12975 0.11 -0.6
3,024,618 - CA264_12975 0.12 -0.6
3,024,666 - CA264_12975 0.14 +0.7
3,024,666 - CA264_12975 0.14 -0.6
3,024,775 + CA264_12975 0.18 -0.0
3,024,776 - CA264_12975 0.18 -1.9
3,024,776 - CA264_12975 0.18 -0.3
3,024,778 + CA264_12975 0.18 -0.7
3,024,778 + CA264_12975 0.18 -2.6
3,024,779 - CA264_12975 0.18 -0.6
3,024,839 + CA264_12975 0.21 +1.6
3,024,839 + CA264_12975 0.21 -0.6
3,024,839 + CA264_12975 0.21 -1.4
3,024,839 + CA264_12975 0.21 -1.2
3,024,905 + CA264_12975 0.23 +1.1
3,025,208 + CA264_12975 0.36 +0.1
3,025,209 - CA264_12975 0.36 +0.2
3,025,289 + CA264_12975 0.39 -1.0
3,025,442 + CA264_12975 0.45 +2.2
3,025,481 + CA264_12975 0.47 -1.5
3,025,482 - CA264_12975 0.47 +0.4
3,025,639 - CA264_12975 0.53 -0.1
3,025,686 - CA264_12975 0.55 -1.4
3,025,781 + CA264_12975 0.59 -1.8
3,025,859 - CA264_12975 0.62 +1.5
3,025,904 + CA264_12975 0.64 -1.7
3,025,904 + CA264_12975 0.64 +1.5
3,025,905 - CA264_12975 0.64 -0.9
3,025,905 - CA264_12975 0.64 +1.2
3,025,928 + CA264_12975 0.65 -1.7
3,025,983 + CA264_12975 0.67 +0.6
3,026,036 - CA264_12975 0.69 -0.1
3,026,043 + CA264_12975 0.69 +1.1
3,026,043 + CA264_12975 0.69 +0.1
3,026,060 + CA264_12975 0.70 -0.2
3,026,060 + CA264_12975 0.70 -1.4
3,026,060 + CA264_12975 0.70 +0.8
3,026,061 - CA264_12975 0.70 -0.2
3,026,061 - CA264_12975 0.70 +2.6
3,026,061 - CA264_12975 0.70 -0.4
3,026,213 - CA264_12975 0.76 -0.5
3,026,213 - CA264_12975 0.76 +1.1
3,026,262 - CA264_12975 0.78 -0.6
3,026,356 - CA264_12975 0.82 +4.0
3,026,426 - CA264_12975 0.85 +0.9
3,026,449 + CA264_12975 0.86 -0.5
3,026,474 + CA264_12975 0.87 +0.1
3,026,474 + CA264_12975 0.87 +0.2
3,026,481 - CA264_12975 0.87 -0.5
3,026,612 - -0.2
3,026,644 - -1.2
3,026,811 + -0.1
3,026,858 + -0.2
3,026,861 - +0.7
3,026,861 - -0.4
3,026,875 + -0.7
3,026,908 + -0.8
3,026,986 - -1.0
3,027,077 + +0.2
3,027,389 + CA264_12980 0.19 -0.7
3,027,389 + CA264_12980 0.19 -1.0
3,027,521 + CA264_12980 0.28 -0.4
3,027,522 - CA264_12980 0.28 +3.1
3,027,549 + CA264_12980 0.30 -0.6
3,027,549 + CA264_12980 0.30 -1.0
3,027,549 + CA264_12980 0.30 +0.0
3,027,549 + CA264_12980 0.30 -1.2
3,027,549 + CA264_12980 0.30 +1.8
3,027,550 - CA264_12980 0.30 +0.2
3,027,692 + CA264_12980 0.39 +0.8
3,027,714 + CA264_12980 0.40 +0.6
3,027,714 + CA264_12980 0.40 -1.1
3,027,715 - CA264_12980 0.40 -0.4

Or see this region's nucleotide sequence