Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_12965

Experiment: m.b. Cisplatin 0.035 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_12960 and CA264_12965 are separated by 154 nucleotidesCA264_12965 and CA264_12970 overlap by 12 nucleotidesCA264_12970 and CA264_12975 are separated by 167 nucleotides CA264_12960: CA264_12960 - peptidase M13, at 3,020,824 to 3,022,890 _12960 CA264_12965: CA264_12965 - hypothetical protein, at 3,023,045 to 3,023,488 _12965 CA264_12970: CA264_12970 - hypothetical protein, at 3,023,477 to 3,024,163 _12970 CA264_12975: CA264_12975 - S9 family peptidase, at 3,024,331 to 3,026,796 _12975 Position (kb) 3023 3024Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3022.110 kb on + strand, within CA264_12960at 3022.112 kb on + strand, within CA264_12960at 3022.112 kb on + strand, within CA264_12960at 3022.113 kb on - strand, within CA264_12960at 3022.113 kb on - strand, within CA264_12960at 3022.122 kb on - strand, within CA264_12960at 3022.259 kb on + strand, within CA264_12960at 3022.260 kb on - strand, within CA264_12960at 3022.260 kb on - strand, within CA264_12960at 3022.277 kb on + strand, within CA264_12960at 3022.385 kb on + strand, within CA264_12960at 3022.385 kb on + strand, within CA264_12960at 3022.385 kb on + strand, within CA264_12960at 3022.385 kb on + strand, within CA264_12960at 3022.385 kb on + strand, within CA264_12960at 3022.385 kb on + strand, within CA264_12960at 3022.385 kb on + strand, within CA264_12960at 3022.385 kb on + strand, within CA264_12960at 3022.385 kb on + strand, within CA264_12960at 3022.385 kb on + strand, within CA264_12960at 3022.386 kb on - strand, within CA264_12960at 3022.386 kb on - strand, within CA264_12960at 3022.386 kb on - strand, within CA264_12960at 3022.386 kb on - strand, within CA264_12960at 3022.386 kb on - strand, within CA264_12960at 3022.386 kb on - strand, within CA264_12960at 3022.386 kb on - strand, within CA264_12960at 3022.386 kb on - strand, within CA264_12960at 3022.498 kb on - strand, within CA264_12960at 3022.541 kb on + strand, within CA264_12960at 3022.715 kb on + strandat 3022.721 kb on + strandat 3022.721 kb on + strandat 3022.797 kb on + strandat 3022.797 kb on + strandat 3022.797 kb on + strandat 3022.797 kb on + strandat 3022.827 kb on + strandat 3022.827 kb on + strandat 3022.827 kb on + strandat 3022.899 kb on + strandat 3022.900 kb on - strandat 3022.919 kb on + strandat 3022.919 kb on + strandat 3022.919 kb on + strandat 3022.920 kb on - strandat 3022.939 kb on + strandat 3022.953 kb on + strandat 3022.954 kb on - strandat 3022.979 kb on + strandat 3023.000 kb on - strandat 3023.005 kb on - strandat 3023.005 kb on - strandat 3023.005 kb on - strandat 3023.009 kb on - strandat 3023.009 kb on - strandat 3023.044 kb on + strandat 3023.045 kb on - strandat 3023.091 kb on - strand, within CA264_12965at 3023.091 kb on - strand, within CA264_12965at 3023.093 kb on + strand, within CA264_12965at 3023.165 kb on + strand, within CA264_12965at 3023.287 kb on + strand, within CA264_12965at 3023.325 kb on - strand, within CA264_12965at 3023.443 kb on - strand, within CA264_12965at 3023.443 kb on - strand, within CA264_12965at 3023.486 kb on + strandat 3023.497 kb on + strandat 3023.498 kb on - strandat 3023.500 kb on - strandat 3023.538 kb on + strandat 3023.539 kb on - strandat 3023.540 kb on + strandat 3023.540 kb on + strandat 3023.540 kb on + strandat 3023.547 kb on + strand, within CA264_12970at 3023.547 kb on + strand, within CA264_12970at 3023.571 kb on - strand, within CA264_12970at 3023.575 kb on + strand, within CA264_12970at 3023.838 kb on + strand, within CA264_12970at 3023.925 kb on + strand, within CA264_12970at 3024.024 kb on - strand, within CA264_12970at 3024.025 kb on + strand, within CA264_12970at 3024.025 kb on + strand, within CA264_12970at 3024.026 kb on - strand, within CA264_12970at 3024.026 kb on - strand, within CA264_12970at 3024.062 kb on + strand, within CA264_12970at 3024.063 kb on - strand, within CA264_12970at 3024.063 kb on - strand, within CA264_12970at 3024.119 kb on - strandat 3024.151 kb on + strandat 3024.151 kb on + strandat 3024.179 kb on + strandat 3024.192 kb on - strandat 3024.269 kb on + strandat 3024.270 kb on - strandat 3024.270 kb on - strandat 3024.270 kb on - strandat 3024.276 kb on - strandat 3024.356 kb on + strandat 3024.356 kb on + strandat 3024.356 kb on + strandat 3024.357 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.035 mg/ml
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3,022,110 + CA264_12960 0.62 +3.1
3,022,112 + CA264_12960 0.62 +1.8
3,022,112 + CA264_12960 0.62 +0.2
3,022,113 - CA264_12960 0.62 -0.7
3,022,113 - CA264_12960 0.62 -0.4
3,022,122 - CA264_12960 0.63 -1.0
3,022,259 + CA264_12960 0.69 +0.6
3,022,260 - CA264_12960 0.69 -1.8
3,022,260 - CA264_12960 0.69 +0.1
3,022,277 + CA264_12960 0.70 -0.5
3,022,385 + CA264_12960 0.76 +1.3
3,022,385 + CA264_12960 0.76 -0.3
3,022,385 + CA264_12960 0.76 -0.4
3,022,385 + CA264_12960 0.76 +1.5
3,022,385 + CA264_12960 0.76 +1.6
3,022,385 + CA264_12960 0.76 -0.1
3,022,385 + CA264_12960 0.76 -0.1
3,022,385 + CA264_12960 0.76 -1.7
3,022,385 + CA264_12960 0.76 -0.4
3,022,385 + CA264_12960 0.76 -0.2
3,022,386 - CA264_12960 0.76 -0.4
3,022,386 - CA264_12960 0.76 +0.9
3,022,386 - CA264_12960 0.76 +0.8
3,022,386 - CA264_12960 0.76 -0.5
3,022,386 - CA264_12960 0.76 +0.2
3,022,386 - CA264_12960 0.76 +0.8
3,022,386 - CA264_12960 0.76 +1.2
3,022,386 - CA264_12960 0.76 +0.3
3,022,498 - CA264_12960 0.81 +1.7
3,022,541 + CA264_12960 0.83 +1.3
3,022,715 + -1.4
3,022,721 + -0.7
3,022,721 + -0.3
3,022,797 + -1.2
3,022,797 + -0.2
3,022,797 + +2.1
3,022,797 + +0.7
3,022,827 + +0.6
3,022,827 + +0.1
3,022,827 + -1.4
3,022,899 + -2.0
3,022,900 - +0.1
3,022,919 + +2.6
3,022,919 + +1.1
3,022,919 + -0.5
3,022,920 - +0.5
3,022,939 + -0.4
3,022,953 + -0.3
3,022,954 - +0.8
3,022,979 + +1.6
3,023,000 - -0.0
3,023,005 - -0.5
3,023,005 - +2.1
3,023,005 - -2.8
3,023,009 - +0.1
3,023,009 - +0.6
3,023,044 + +0.6
3,023,045 - +0.2
3,023,091 - CA264_12965 0.10 +0.1
3,023,091 - CA264_12965 0.10 -0.5
3,023,093 + CA264_12965 0.11 -2.1
3,023,165 + CA264_12965 0.27 -1.2
3,023,287 + CA264_12965 0.55 +0.3
3,023,325 - CA264_12965 0.63 +1.0
3,023,443 - CA264_12965 0.90 +1.0
3,023,443 - CA264_12965 0.90 -0.7
3,023,486 + +1.4
3,023,497 + +0.9
3,023,498 - +2.5
3,023,500 - +0.5
3,023,538 + +0.1
3,023,539 - -0.3
3,023,540 + +0.6
3,023,540 + +0.9
3,023,540 + -0.0
3,023,547 + CA264_12970 0.10 -1.4
3,023,547 + CA264_12970 0.10 -0.4
3,023,571 - CA264_12970 0.14 +2.2
3,023,575 + CA264_12970 0.14 -0.6
3,023,838 + CA264_12970 0.53 +1.0
3,023,925 + CA264_12970 0.65 +2.4
3,024,024 - CA264_12970 0.80 -0.9
3,024,025 + CA264_12970 0.80 -1.8
3,024,025 + CA264_12970 0.80 -1.2
3,024,026 - CA264_12970 0.80 +1.2
3,024,026 - CA264_12970 0.80 -0.9
3,024,062 + CA264_12970 0.85 +0.3
3,024,063 - CA264_12970 0.85 +1.0
3,024,063 - CA264_12970 0.85 +1.0
3,024,119 - -1.1
3,024,151 + -1.9
3,024,151 + -0.6
3,024,179 + -1.5
3,024,192 - +0.7
3,024,269 + -0.5
3,024,270 - -0.3
3,024,270 - -0.3
3,024,270 - +1.1
3,024,276 - +0.5
3,024,356 + -0.1
3,024,356 + +3.0
3,024,356 + +0.3
3,024,357 - -0.7

Or see this region's nucleotide sequence