Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_11455

Experiment: m.b. Cisplatin 0.035 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_11450 and CA264_11455 are separated by 44 nucleotidesCA264_11455 and CA264_11460 are separated by 10 nucleotides CA264_11450: CA264_11450 - serine/threonine protein phosphatase, at 2,654,955 to 2,656,037 _11450 CA264_11455: CA264_11455 - RagB/SusD family nutrient uptake outer membrane protein, at 2,656,082 to 2,657,776 _11455 CA264_11460: CA264_11460 - SusC/RagA family TonB-linked outer membrane protein, at 2,657,787 to 2,660,840 _11460 Position (kb) 2656 2657 2658Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2655.202 kb on - strand, within CA264_11450at 2655.202 kb on - strand, within CA264_11450at 2655.329 kb on + strand, within CA264_11450at 2655.352 kb on + strand, within CA264_11450at 2655.361 kb on + strand, within CA264_11450at 2655.362 kb on - strand, within CA264_11450at 2655.396 kb on - strand, within CA264_11450at 2655.398 kb on - strand, within CA264_11450at 2655.398 kb on - strand, within CA264_11450at 2655.402 kb on - strand, within CA264_11450at 2655.402 kb on - strand, within CA264_11450at 2655.402 kb on - strand, within CA264_11450at 2655.433 kb on - strand, within CA264_11450at 2655.483 kb on - strand, within CA264_11450at 2655.536 kb on - strand, within CA264_11450at 2655.598 kb on + strand, within CA264_11450at 2655.626 kb on + strand, within CA264_11450at 2655.626 kb on + strand, within CA264_11450at 2655.650 kb on - strand, within CA264_11450at 2655.650 kb on - strand, within CA264_11450at 2655.827 kb on + strand, within CA264_11450at 2655.865 kb on - strand, within CA264_11450at 2655.867 kb on + strand, within CA264_11450at 2655.868 kb on - strand, within CA264_11450at 2655.891 kb on + strand, within CA264_11450at 2655.891 kb on + strand, within CA264_11450at 2655.891 kb on + strand, within CA264_11450at 2655.895 kb on + strand, within CA264_11450at 2655.896 kb on - strand, within CA264_11450at 2655.903 kb on + strand, within CA264_11450at 2655.903 kb on + strand, within CA264_11450at 2655.903 kb on + strand, within CA264_11450at 2655.903 kb on + strand, within CA264_11450at 2655.929 kb on - strandat 2656.044 kb on - strandat 2656.071 kb on + strandat 2656.072 kb on - strandat 2656.072 kb on - strandat 2656.074 kb on - strandat 2656.074 kb on - strandat 2656.074 kb on - strandat 2656.079 kb on + strandat 2656.079 kb on + strandat 2656.080 kb on - strandat 2656.083 kb on + strandat 2656.084 kb on - strandat 2656.084 kb on - strandat 2656.084 kb on - strandat 2656.087 kb on - strandat 2656.104 kb on - strandat 2656.150 kb on - strandat 2656.195 kb on + strandat 2656.260 kb on + strand, within CA264_11455at 2656.260 kb on + strand, within CA264_11455at 2656.321 kb on - strand, within CA264_11455at 2656.495 kb on - strand, within CA264_11455at 2656.516 kb on + strand, within CA264_11455at 2656.517 kb on - strand, within CA264_11455at 2656.557 kb on - strand, within CA264_11455at 2656.557 kb on - strand, within CA264_11455at 2656.572 kb on + strand, within CA264_11455at 2656.580 kb on + strand, within CA264_11455at 2656.580 kb on + strand, within CA264_11455at 2656.677 kb on + strand, within CA264_11455at 2656.678 kb on - strand, within CA264_11455at 2656.686 kb on + strand, within CA264_11455at 2656.686 kb on + strand, within CA264_11455at 2656.687 kb on - strand, within CA264_11455at 2656.690 kb on + strand, within CA264_11455at 2656.690 kb on + strand, within CA264_11455at 2656.690 kb on + strand, within CA264_11455at 2656.694 kb on + strand, within CA264_11455at 2656.694 kb on + strand, within CA264_11455at 2656.695 kb on - strand, within CA264_11455at 2656.695 kb on - strand, within CA264_11455at 2656.758 kb on + strand, within CA264_11455at 2656.759 kb on - strand, within CA264_11455at 2656.766 kb on - strand, within CA264_11455at 2656.772 kb on - strand, within CA264_11455at 2656.773 kb on + strand, within CA264_11455at 2656.773 kb on + strand, within CA264_11455at 2656.774 kb on - strand, within CA264_11455at 2656.774 kb on - strand, within CA264_11455at 2656.878 kb on - strand, within CA264_11455at 2656.903 kb on - strand, within CA264_11455at 2657.055 kb on + strand, within CA264_11455at 2657.065 kb on - strand, within CA264_11455at 2657.098 kb on + strand, within CA264_11455at 2657.099 kb on - strand, within CA264_11455at 2657.099 kb on - strand, within CA264_11455at 2657.099 kb on - strand, within CA264_11455at 2657.099 kb on - strand, within CA264_11455at 2657.099 kb on - strand, within CA264_11455at 2657.142 kb on + strand, within CA264_11455at 2657.143 kb on - strand, within CA264_11455at 2657.143 kb on - strand, within CA264_11455at 2657.144 kb on + strand, within CA264_11455at 2657.183 kb on - strand, within CA264_11455at 2657.212 kb on - strand, within CA264_11455at 2657.254 kb on - strand, within CA264_11455at 2657.309 kb on + strand, within CA264_11455at 2657.309 kb on + strand, within CA264_11455at 2657.309 kb on + strand, within CA264_11455at 2657.310 kb on - strand, within CA264_11455at 2657.310 kb on - strand, within CA264_11455at 2657.319 kb on + strand, within CA264_11455at 2657.320 kb on - strand, within CA264_11455at 2657.347 kb on - strand, within CA264_11455at 2657.347 kb on - strand, within CA264_11455at 2657.349 kb on + strand, within CA264_11455at 2657.459 kb on + strand, within CA264_11455at 2657.465 kb on - strand, within CA264_11455at 2657.479 kb on + strand, within CA264_11455at 2657.480 kb on - strand, within CA264_11455at 2657.488 kb on - strand, within CA264_11455at 2657.488 kb on - strand, within CA264_11455at 2657.578 kb on + strand, within CA264_11455at 2657.602 kb on - strand, within CA264_11455at 2657.626 kb on - strandat 2657.635 kb on - strandat 2657.645 kb on + strandat 2657.711 kb on + strandat 2657.712 kb on - strandat 2657.732 kb on + strandat 2657.733 kb on - strandat 2657.733 kb on - strandat 2657.753 kb on + strandat 2657.753 kb on + strandat 2657.754 kb on - strandat 2657.754 kb on - strandat 2657.756 kb on - strandat 2657.756 kb on - strandat 2657.762 kb on + strandat 2657.763 kb on - strandat 2657.763 kb on - strandat 2657.803 kb on - strandat 2657.803 kb on - strandat 2657.809 kb on - strandat 2657.830 kb on + strandat 2657.830 kb on + strandat 2657.913 kb on + strandat 2657.939 kb on + strandat 2657.959 kb on + strandat 2658.021 kb on - strandat 2658.054 kb on + strandat 2658.076 kb on - strandat 2658.098 kb on - strand, within CA264_11460at 2658.098 kb on - strand, within CA264_11460at 2658.199 kb on - strand, within CA264_11460at 2658.252 kb on - strand, within CA264_11460at 2658.252 kb on - strand, within CA264_11460at 2658.260 kb on - strand, within CA264_11460at 2658.286 kb on - strand, within CA264_11460at 2658.302 kb on - strand, within CA264_11460at 2658.312 kb on + strand, within CA264_11460at 2658.351 kb on + strand, within CA264_11460at 2658.355 kb on + strand, within CA264_11460at 2658.356 kb on - strand, within CA264_11460at 2658.356 kb on - strand, within CA264_11460at 2658.383 kb on + strand, within CA264_11460at 2658.384 kb on - strand, within CA264_11460at 2658.384 kb on - strand, within CA264_11460at 2658.442 kb on + strand, within CA264_11460at 2658.442 kb on + strand, within CA264_11460at 2658.503 kb on + strand, within CA264_11460at 2658.503 kb on + strand, within CA264_11460at 2658.504 kb on - strand, within CA264_11460at 2658.504 kb on - strand, within CA264_11460at 2658.504 kb on - strand, within CA264_11460at 2658.504 kb on - strand, within CA264_11460at 2658.573 kb on + strand, within CA264_11460at 2658.578 kb on + strand, within CA264_11460at 2658.578 kb on + strand, within CA264_11460at 2658.615 kb on - strand, within CA264_11460at 2658.620 kb on + strand, within CA264_11460at 2658.657 kb on - strand, within CA264_11460at 2658.658 kb on + strand, within CA264_11460at 2658.658 kb on + strand, within CA264_11460at 2658.658 kb on + strand, within CA264_11460at 2658.659 kb on - strand, within CA264_11460at 2658.659 kb on - strand, within CA264_11460at 2658.667 kb on - strand, within CA264_11460at 2658.705 kb on - strand, within CA264_11460at 2658.705 kb on - strand, within CA264_11460at 2658.709 kb on + strand, within CA264_11460at 2658.735 kb on - strand, within CA264_11460at 2658.745 kb on + strand, within CA264_11460at 2658.745 kb on + strand, within CA264_11460at 2658.745 kb on + strand, within CA264_11460

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.035 mg/ml
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2,655,202 - CA264_11450 0.23 -1.6
2,655,202 - CA264_11450 0.23 -0.9
2,655,329 + CA264_11450 0.35 -0.0
2,655,352 + CA264_11450 0.37 -0.8
2,655,361 + CA264_11450 0.37 +0.6
2,655,362 - CA264_11450 0.38 -0.6
2,655,396 - CA264_11450 0.41 -0.5
2,655,398 - CA264_11450 0.41 -1.1
2,655,398 - CA264_11450 0.41 -0.4
2,655,402 - CA264_11450 0.41 -1.1
2,655,402 - CA264_11450 0.41 -0.6
2,655,402 - CA264_11450 0.41 -1.7
2,655,433 - CA264_11450 0.44 -1.6
2,655,483 - CA264_11450 0.49 -0.7
2,655,536 - CA264_11450 0.54 -1.7
2,655,598 + CA264_11450 0.59 -1.7
2,655,626 + CA264_11450 0.62 -0.6
2,655,626 + CA264_11450 0.62 +0.1
2,655,650 - CA264_11450 0.64 -1.9
2,655,650 - CA264_11450 0.64 -0.5
2,655,827 + CA264_11450 0.81 -0.0
2,655,865 - CA264_11450 0.84 -1.0
2,655,867 + CA264_11450 0.84 -2.1
2,655,868 - CA264_11450 0.84 +0.4
2,655,891 + CA264_11450 0.86 -0.7
2,655,891 + CA264_11450 0.86 +1.4
2,655,891 + CA264_11450 0.86 +0.1
2,655,895 + CA264_11450 0.87 +1.0
2,655,896 - CA264_11450 0.87 -1.6
2,655,903 + CA264_11450 0.88 -0.5
2,655,903 + CA264_11450 0.88 -2.0
2,655,903 + CA264_11450 0.88 -1.6
2,655,903 + CA264_11450 0.88 -0.5
2,655,929 - +3.2
2,656,044 - -0.8
2,656,071 + +0.5
2,656,072 - -1.0
2,656,072 - -2.0
2,656,074 - +0.3
2,656,074 - -1.8
2,656,074 - -0.3
2,656,079 + -1.0
2,656,079 + -0.9
2,656,080 - -0.8
2,656,083 + +0.3
2,656,084 - -0.8
2,656,084 - -0.9
2,656,084 - +0.6
2,656,087 - +0.1
2,656,104 - -1.3
2,656,150 - -1.1
2,656,195 + -0.6
2,656,260 + CA264_11455 0.11 -0.1
2,656,260 + CA264_11455 0.11 +1.0
2,656,321 - CA264_11455 0.14 -0.0
2,656,495 - CA264_11455 0.24 -1.4
2,656,516 + CA264_11455 0.26 +1.4
2,656,517 - CA264_11455 0.26 +2.5
2,656,557 - CA264_11455 0.28 -1.0
2,656,557 - CA264_11455 0.28 +0.3
2,656,572 + CA264_11455 0.29 -1.7
2,656,580 + CA264_11455 0.29 +1.4
2,656,580 + CA264_11455 0.29 -0.9
2,656,677 + CA264_11455 0.35 +0.6
2,656,678 - CA264_11455 0.35 -0.5
2,656,686 + CA264_11455 0.36 -0.8
2,656,686 + CA264_11455 0.36 +0.9
2,656,687 - CA264_11455 0.36 +0.2
2,656,690 + CA264_11455 0.36 -1.7
2,656,690 + CA264_11455 0.36 -0.5
2,656,690 + CA264_11455 0.36 -0.2
2,656,694 + CA264_11455 0.36 -0.1
2,656,694 + CA264_11455 0.36 +0.2
2,656,695 - CA264_11455 0.36 -1.7
2,656,695 - CA264_11455 0.36 -0.4
2,656,758 + CA264_11455 0.40 -1.4
2,656,759 - CA264_11455 0.40 +0.0
2,656,766 - CA264_11455 0.40 -0.3
2,656,772 - CA264_11455 0.41 +0.4
2,656,773 + CA264_11455 0.41 -0.5
2,656,773 + CA264_11455 0.41 -1.5
2,656,774 - CA264_11455 0.41 -0.5
2,656,774 - CA264_11455 0.41 -0.7
2,656,878 - CA264_11455 0.47 +0.1
2,656,903 - CA264_11455 0.48 -0.7
2,657,055 + CA264_11455 0.57 -1.0
2,657,065 - CA264_11455 0.58 +0.8
2,657,098 + CA264_11455 0.60 -0.9
2,657,099 - CA264_11455 0.60 -0.7
2,657,099 - CA264_11455 0.60 -0.9
2,657,099 - CA264_11455 0.60 -2.4
2,657,099 - CA264_11455 0.60 -2.2
2,657,099 - CA264_11455 0.60 -0.2
2,657,142 + CA264_11455 0.63 +2.9
2,657,143 - CA264_11455 0.63 +1.8
2,657,143 - CA264_11455 0.63 -0.1
2,657,144 + CA264_11455 0.63 -1.3
2,657,183 - CA264_11455 0.65 -1.0
2,657,212 - CA264_11455 0.67 -1.7
2,657,254 - CA264_11455 0.69 -0.4
2,657,309 + CA264_11455 0.72 +0.9
2,657,309 + CA264_11455 0.72 -0.0
2,657,309 + CA264_11455 0.72 +1.6
2,657,310 - CA264_11455 0.72 -0.7
2,657,310 - CA264_11455 0.72 -0.2
2,657,319 + CA264_11455 0.73 +0.5
2,657,320 - CA264_11455 0.73 -1.0
2,657,347 - CA264_11455 0.75 -0.4
2,657,347 - CA264_11455 0.75 -2.2
2,657,349 + CA264_11455 0.75 -0.3
2,657,459 + CA264_11455 0.81 -1.3
2,657,465 - CA264_11455 0.82 +0.7
2,657,479 + CA264_11455 0.82 -0.8
2,657,480 - CA264_11455 0.82 -1.5
2,657,488 - CA264_11455 0.83 -1.2
2,657,488 - CA264_11455 0.83 -0.6
2,657,578 + CA264_11455 0.88 +0.8
2,657,602 - CA264_11455 0.90 +1.0
2,657,626 - -1.7
2,657,635 - +0.0
2,657,645 + -0.9
2,657,711 + +0.2
2,657,712 - +0.2
2,657,732 + +0.7
2,657,733 - -1.6
2,657,733 - -0.3
2,657,753 + -0.8
2,657,753 + -0.5
2,657,754 - -0.1
2,657,754 - +0.6
2,657,756 - -1.2
2,657,756 - +1.6
2,657,762 + +0.2
2,657,763 - -1.2
2,657,763 - -2.1
2,657,803 - +0.6
2,657,803 - -1.7
2,657,809 - -0.7
2,657,830 + -1.0
2,657,830 + +0.2
2,657,913 + -1.4
2,657,939 + +2.0
2,657,959 + -0.7
2,658,021 - +0.1
2,658,054 + -1.3
2,658,076 - -1.0
2,658,098 - CA264_11460 0.10 -1.0
2,658,098 - CA264_11460 0.10 -0.1
2,658,199 - CA264_11460 0.13 -1.7
2,658,252 - CA264_11460 0.15 -0.3
2,658,252 - CA264_11460 0.15 -2.1
2,658,260 - CA264_11460 0.15 -0.5
2,658,286 - CA264_11460 0.16 -0.5
2,658,302 - CA264_11460 0.17 +1.0
2,658,312 + CA264_11460 0.17 -0.1
2,658,351 + CA264_11460 0.18 -0.2
2,658,355 + CA264_11460 0.19 -0.6
2,658,356 - CA264_11460 0.19 +1.0
2,658,356 - CA264_11460 0.19 -1.0
2,658,383 + CA264_11460 0.20 -2.9
2,658,384 - CA264_11460 0.20 -0.3
2,658,384 - CA264_11460 0.20 +0.9
2,658,442 + CA264_11460 0.21 +0.1
2,658,442 + CA264_11460 0.21 -0.6
2,658,503 + CA264_11460 0.23 +0.6
2,658,503 + CA264_11460 0.23 +0.2
2,658,504 - CA264_11460 0.23 +1.9
2,658,504 - CA264_11460 0.23 -0.4
2,658,504 - CA264_11460 0.23 -1.3
2,658,504 - CA264_11460 0.23 +0.4
2,658,573 + CA264_11460 0.26 -0.8
2,658,578 + CA264_11460 0.26 -0.6
2,658,578 + CA264_11460 0.26 -0.3
2,658,615 - CA264_11460 0.27 -1.3
2,658,620 + CA264_11460 0.27 +0.1
2,658,657 - CA264_11460 0.28 -0.3
2,658,658 + CA264_11460 0.29 -2.7
2,658,658 + CA264_11460 0.29 +1.4
2,658,658 + CA264_11460 0.29 +2.2
2,658,659 - CA264_11460 0.29 +1.3
2,658,659 - CA264_11460 0.29 -0.2
2,658,667 - CA264_11460 0.29 -0.1
2,658,705 - CA264_11460 0.30 +0.3
2,658,705 - CA264_11460 0.30 -0.1
2,658,709 + CA264_11460 0.30 +0.1
2,658,735 - CA264_11460 0.31 -0.1
2,658,745 + CA264_11460 0.31 +0.4
2,658,745 + CA264_11460 0.31 +2.2
2,658,745 + CA264_11460 0.31 -0.7

Or see this region's nucleotide sequence