Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_11430

Experiment: m.b. Cisplatin 0.035 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_11425 and CA264_11430 are separated by 316 nucleotidesCA264_11430 and CA264_11435 are separated by 17 nucleotides CA264_11425: CA264_11425 - hydroxyacid dehydrogenase, at 2,647,671 to 2,648,672 _11425 CA264_11430: CA264_11430 - endonuclease, at 2,648,989 to 2,649,936 _11430 CA264_11435: CA264_11435 - FAD-dependent oxidoreductase, at 2,649,954 to 2,651,351 _11435 Position (kb) 2648 2649 2650Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 2647.998 kb on - strand, within CA264_11425at 2648.016 kb on - strand, within CA264_11425at 2648.069 kb on + strand, within CA264_11425at 2648.070 kb on - strand, within CA264_11425at 2648.070 kb on - strand, within CA264_11425at 2648.070 kb on - strand, within CA264_11425at 2648.131 kb on + strand, within CA264_11425at 2648.320 kb on - strand, within CA264_11425at 2648.366 kb on + strand, within CA264_11425at 2648.381 kb on + strand, within CA264_11425at 2648.392 kb on - strand, within CA264_11425at 2648.392 kb on - strand, within CA264_11425at 2648.393 kb on + strand, within CA264_11425at 2648.394 kb on - strand, within CA264_11425at 2648.481 kb on + strand, within CA264_11425at 2648.482 kb on - strand, within CA264_11425at 2648.482 kb on - strand, within CA264_11425at 2648.567 kb on - strand, within CA264_11425at 2648.567 kb on - strand, within CA264_11425at 2648.594 kb on + strandat 2648.594 kb on + strandat 2648.597 kb on - strandat 2648.597 kb on - strandat 2648.597 kb on - strandat 2648.599 kb on - strandat 2648.632 kb on - strandat 2648.688 kb on + strandat 2648.688 kb on + strandat 2648.688 kb on + strandat 2648.688 kb on + strandat 2648.688 kb on + strandat 2648.688 kb on + strandat 2648.688 kb on + strandat 2648.688 kb on + strandat 2648.688 kb on + strandat 2648.688 kb on + strandat 2648.688 kb on + strandat 2648.688 kb on + strandat 2648.688 kb on + strandat 2648.688 kb on + strandat 2648.688 kb on + strandat 2648.688 kb on + strandat 2648.688 kb on + strandat 2648.688 kb on + strandat 2648.688 kb on + strandat 2648.688 kb on + strandat 2648.689 kb on - strandat 2648.689 kb on - strandat 2648.689 kb on - strandat 2648.689 kb on - strandat 2648.689 kb on - strandat 2648.689 kb on - strandat 2648.689 kb on - strandat 2648.689 kb on - strandat 2648.689 kb on - strandat 2648.689 kb on - strandat 2648.689 kb on - strandat 2648.689 kb on - strandat 2648.689 kb on - strandat 2648.689 kb on - strandat 2648.689 kb on - strandat 2648.689 kb on - strandat 2648.689 kb on - strandat 2648.689 kb on - strandat 2648.689 kb on - strandat 2648.689 kb on - strandat 2648.689 kb on - strandat 2648.695 kb on - strandat 2648.697 kb on + strandat 2648.697 kb on + strandat 2648.697 kb on + strandat 2648.697 kb on + strandat 2648.698 kb on - strandat 2648.698 kb on - strandat 2648.708 kb on - strandat 2648.708 kb on - strandat 2648.708 kb on - strandat 2648.711 kb on - strandat 2648.828 kb on + strandat 2648.828 kb on + strandat 2648.828 kb on + strandat 2648.831 kb on - strandat 2648.888 kb on - strandat 2648.909 kb on - strandat 2648.920 kb on - strandat 2648.922 kb on + strandat 2648.929 kb on + strandat 2648.930 kb on - strandat 2648.930 kb on - strandat 2648.959 kb on - strandat 2648.959 kb on - strandat 2648.960 kb on + strandat 2648.960 kb on + strandat 2648.961 kb on - strandat 2648.961 kb on - strandat 2648.961 kb on - strandat 2648.961 kb on - strandat 2648.976 kb on - strandat 2648.990 kb on + strandat 2649.112 kb on + strand, within CA264_11430at 2649.202 kb on + strand, within CA264_11430at 2649.212 kb on + strand, within CA264_11430at 2649.212 kb on + strand, within CA264_11430at 2649.212 kb on + strand, within CA264_11430at 2649.213 kb on - strand, within CA264_11430at 2649.213 kb on - strand, within CA264_11430at 2649.213 kb on - strand, within CA264_11430at 2649.249 kb on - strand, within CA264_11430at 2649.299 kb on + strand, within CA264_11430at 2649.341 kb on - strand, within CA264_11430at 2649.431 kb on - strand, within CA264_11430at 2649.483 kb on + strand, within CA264_11430at 2649.506 kb on + strand, within CA264_11430at 2649.575 kb on + strand, within CA264_11430at 2649.681 kb on + strand, within CA264_11430at 2649.685 kb on + strand, within CA264_11430at 2649.685 kb on + strand, within CA264_11430at 2649.685 kb on + strand, within CA264_11430at 2649.685 kb on + strand, within CA264_11430at 2649.685 kb on + strand, within CA264_11430at 2649.686 kb on - strand, within CA264_11430at 2649.688 kb on + strand, within CA264_11430at 2649.688 kb on + strand, within CA264_11430at 2649.688 kb on + strand, within CA264_11430at 2649.688 kb on + strand, within CA264_11430at 2649.689 kb on - strand, within CA264_11430at 2649.712 kb on + strand, within CA264_11430at 2649.713 kb on - strand, within CA264_11430at 2649.718 kb on + strand, within CA264_11430at 2649.718 kb on + strand, within CA264_11430at 2649.719 kb on - strand, within CA264_11430at 2649.790 kb on - strand, within CA264_11430at 2649.795 kb on + strand, within CA264_11430at 2649.796 kb on - strand, within CA264_11430at 2649.796 kb on - strand, within CA264_11430at 2649.800 kb on - strand, within CA264_11430at 2649.800 kb on - strand, within CA264_11430at 2649.805 kb on - strand, within CA264_11430at 2649.838 kb on - strand, within CA264_11430at 2649.872 kb on - strandat 2649.936 kb on + strandat 2650.036 kb on - strandat 2650.106 kb on + strand, within CA264_11435at 2650.106 kb on + strand, within CA264_11435at 2650.137 kb on - strand, within CA264_11435at 2650.137 kb on - strand, within CA264_11435at 2650.161 kb on - strand, within CA264_11435at 2650.222 kb on + strand, within CA264_11435at 2650.223 kb on - strand, within CA264_11435at 2650.347 kb on + strand, within CA264_11435at 2650.347 kb on + strand, within CA264_11435at 2650.347 kb on + strand, within CA264_11435at 2650.347 kb on + strand, within CA264_11435at 2650.348 kb on - strand, within CA264_11435at 2650.348 kb on - strand, within CA264_11435at 2650.352 kb on - strand, within CA264_11435at 2650.435 kb on + strand, within CA264_11435at 2650.436 kb on - strand, within CA264_11435at 2650.447 kb on + strand, within CA264_11435at 2650.447 kb on + strand, within CA264_11435at 2650.541 kb on + strand, within CA264_11435at 2650.551 kb on + strand, within CA264_11435at 2650.551 kb on + strand, within CA264_11435at 2650.575 kb on - strand, within CA264_11435at 2650.579 kb on - strand, within CA264_11435at 2650.650 kb on + strand, within CA264_11435at 2650.655 kb on + strand, within CA264_11435at 2650.655 kb on + strand, within CA264_11435at 2650.655 kb on + strand, within CA264_11435at 2650.706 kb on - strand, within CA264_11435at 2650.727 kb on + strand, within CA264_11435at 2650.779 kb on - strand, within CA264_11435at 2650.882 kb on - strand, within CA264_11435at 2650.882 kb on - strand, within CA264_11435at 2650.882 kb on - strand, within CA264_11435at 2650.884 kb on - strand, within CA264_11435

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.035 mg/ml
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2,647,998 - CA264_11425 0.33 -1.8
2,648,016 - CA264_11425 0.34 +0.6
2,648,069 + CA264_11425 0.40 +1.7
2,648,070 - CA264_11425 0.40 +0.4
2,648,070 - CA264_11425 0.40 -1.2
2,648,070 - CA264_11425 0.40 +0.5
2,648,131 + CA264_11425 0.46 -1.1
2,648,320 - CA264_11425 0.65 -1.1
2,648,366 + CA264_11425 0.69 -0.0
2,648,381 + CA264_11425 0.71 -1.3
2,648,392 - CA264_11425 0.72 +0.9
2,648,392 - CA264_11425 0.72 -1.4
2,648,393 + CA264_11425 0.72 -0.1
2,648,394 - CA264_11425 0.72 -0.4
2,648,481 + CA264_11425 0.81 -1.5
2,648,482 - CA264_11425 0.81 -1.6
2,648,482 - CA264_11425 0.81 +1.6
2,648,567 - CA264_11425 0.89 +0.2
2,648,567 - CA264_11425 0.89 -0.3
2,648,594 + -1.0
2,648,594 + -0.4
2,648,597 - +1.6
2,648,597 - -0.4
2,648,597 - +0.4
2,648,599 - -0.1
2,648,632 - +0.8
2,648,688 + -0.9
2,648,688 + -0.6
2,648,688 + -0.6
2,648,688 + -0.5
2,648,688 + +0.2
2,648,688 + -0.6
2,648,688 + -1.3
2,648,688 + +2.4
2,648,688 + -0.3
2,648,688 + -1.1
2,648,688 + +0.9
2,648,688 + -1.7
2,648,688 + -1.5
2,648,688 + +1.8
2,648,688 + +1.1
2,648,688 + -1.7
2,648,688 + -0.3
2,648,688 + -2.6
2,648,688 + +1.8
2,648,688 + -1.0
2,648,689 - +0.8
2,648,689 - +0.2
2,648,689 - -1.6
2,648,689 - -0.6
2,648,689 - -0.5
2,648,689 - -2.2
2,648,689 - +1.0
2,648,689 - +0.2
2,648,689 - -1.3
2,648,689 - -0.5
2,648,689 - -1.1
2,648,689 - -1.7
2,648,689 - -0.1
2,648,689 - -0.0
2,648,689 - -1.3
2,648,689 - -2.0
2,648,689 - +0.4
2,648,689 - -1.0
2,648,689 - +0.0
2,648,689 - -1.6
2,648,689 - -1.7
2,648,695 - -1.6
2,648,697 + -0.4
2,648,697 + -0.1
2,648,697 + +1.0
2,648,697 + -0.6
2,648,698 - +1.0
2,648,698 - +0.0
2,648,708 - -0.4
2,648,708 - +0.3
2,648,708 - +0.1
2,648,711 - -1.8
2,648,828 + +1.7
2,648,828 + +1.3
2,648,828 + +1.0
2,648,831 - +0.5
2,648,888 - -1.5
2,648,909 - +0.6
2,648,920 - +0.1
2,648,922 + +0.3
2,648,929 + +0.2
2,648,930 - -1.4
2,648,930 - +1.0
2,648,959 - -2.1
2,648,959 - -1.7
2,648,960 + -0.9
2,648,960 + -0.3
2,648,961 - -1.4
2,648,961 - -1.4
2,648,961 - +0.8
2,648,961 - +1.2
2,648,976 - -0.3
2,648,990 + -1.6
2,649,112 + CA264_11430 0.13 +0.0
2,649,202 + CA264_11430 0.22 -0.6
2,649,212 + CA264_11430 0.24 -0.6
2,649,212 + CA264_11430 0.24 +0.9
2,649,212 + CA264_11430 0.24 -1.7
2,649,213 - CA264_11430 0.24 +1.2
2,649,213 - CA264_11430 0.24 +0.5
2,649,213 - CA264_11430 0.24 +3.2
2,649,249 - CA264_11430 0.27 -0.8
2,649,299 + CA264_11430 0.33 +0.4
2,649,341 - CA264_11430 0.37 -0.2
2,649,431 - CA264_11430 0.47 -1.2
2,649,483 + CA264_11430 0.52 +1.5
2,649,506 + CA264_11430 0.55 -0.3
2,649,575 + CA264_11430 0.62 -0.8
2,649,681 + CA264_11430 0.73 -2.1
2,649,685 + CA264_11430 0.73 -0.8
2,649,685 + CA264_11430 0.73 +0.8
2,649,685 + CA264_11430 0.73 -0.5
2,649,685 + CA264_11430 0.73 +0.1
2,649,685 + CA264_11430 0.73 -2.5
2,649,686 - CA264_11430 0.74 -0.1
2,649,688 + CA264_11430 0.74 +1.5
2,649,688 + CA264_11430 0.74 -1.4
2,649,688 + CA264_11430 0.74 +0.9
2,649,688 + CA264_11430 0.74 -0.1
2,649,689 - CA264_11430 0.74 -2.5
2,649,712 + CA264_11430 0.76 -0.8
2,649,713 - CA264_11430 0.76 -0.2
2,649,718 + CA264_11430 0.77 -0.8
2,649,718 + CA264_11430 0.77 -1.6
2,649,719 - CA264_11430 0.77 -0.5
2,649,790 - CA264_11430 0.84 +0.0
2,649,795 + CA264_11430 0.85 +1.1
2,649,796 - CA264_11430 0.85 -0.4
2,649,796 - CA264_11430 0.85 -0.7
2,649,800 - CA264_11430 0.86 +0.2
2,649,800 - CA264_11430 0.86 +0.3
2,649,805 - CA264_11430 0.86 +0.2
2,649,838 - CA264_11430 0.90 -2.3
2,649,872 - +0.3
2,649,936 + +0.5
2,650,036 - +1.2
2,650,106 + CA264_11435 0.11 -0.4
2,650,106 + CA264_11435 0.11 -0.2
2,650,137 - CA264_11435 0.13 -2.2
2,650,137 - CA264_11435 0.13 -0.3
2,650,161 - CA264_11435 0.15 +0.0
2,650,222 + CA264_11435 0.19 +1.0
2,650,223 - CA264_11435 0.19 -0.7
2,650,347 + CA264_11435 0.28 -0.9
2,650,347 + CA264_11435 0.28 -0.9
2,650,347 + CA264_11435 0.28 -0.6
2,650,347 + CA264_11435 0.28 -0.6
2,650,348 - CA264_11435 0.28 +1.1
2,650,348 - CA264_11435 0.28 -1.9
2,650,352 - CA264_11435 0.28 -0.1
2,650,435 + CA264_11435 0.34 -0.4
2,650,436 - CA264_11435 0.34 +0.4
2,650,447 + CA264_11435 0.35 -1.9
2,650,447 + CA264_11435 0.35 -0.8
2,650,541 + CA264_11435 0.42 +0.8
2,650,551 + CA264_11435 0.43 -1.0
2,650,551 + CA264_11435 0.43 -0.7
2,650,575 - CA264_11435 0.44 +0.3
2,650,579 - CA264_11435 0.45 -0.3
2,650,650 + CA264_11435 0.50 +0.5
2,650,655 + CA264_11435 0.50 +6.0
2,650,655 + CA264_11435 0.50 -0.5
2,650,655 + CA264_11435 0.50 -2.7
2,650,706 - CA264_11435 0.54 +0.6
2,650,727 + CA264_11435 0.55 -0.6
2,650,779 - CA264_11435 0.59 -1.1
2,650,882 - CA264_11435 0.66 -1.1
2,650,882 - CA264_11435 0.66 +0.2
2,650,882 - CA264_11435 0.66 -1.6
2,650,884 - CA264_11435 0.67 +0.6

Or see this region's nucleotide sequence