Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_09650

Experiment: m.b. Cisplatin 0.035 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_09640 and CA264_09645 are separated by 89 nucleotidesCA264_09645 and CA264_09650 are separated by 82 nucleotidesCA264_09650 and CA264_09655 are separated by 73 nucleotidesCA264_09655 and CA264_09660 are separated by 117 nucleotides CA264_09640: CA264_09640 - hypothetical protein, at 2,245,768 to 2,246,403 _09640 CA264_09645: CA264_09645 - hypothetical protein, at 2,246,493 to 2,246,888 _09645 CA264_09650: CA264_09650 - hypothetical protein, at 2,246,971 to 2,247,432 _09650 CA264_09655: CA264_09655 - SMI1/KNR4 family protein, at 2,247,506 to 2,247,943 _09655 CA264_09660: CA264_09660 - hypothetical protein, at 2,248,061 to 2,248,717 _09660 Position (kb) 2246 2247 2248Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2245.987 kb on + strand, within CA264_09640at 2245.987 kb on + strand, within CA264_09640at 2246.007 kb on + strand, within CA264_09640at 2246.022 kb on + strand, within CA264_09640at 2246.024 kb on + strand, within CA264_09640at 2246.031 kb on + strand, within CA264_09640at 2246.036 kb on - strand, within CA264_09640at 2246.047 kb on + strand, within CA264_09640at 2246.078 kb on - strand, within CA264_09640at 2246.078 kb on - strand, within CA264_09640at 2246.078 kb on - strand, within CA264_09640at 2246.083 kb on - strand, within CA264_09640at 2246.083 kb on - strand, within CA264_09640at 2246.102 kb on - strand, within CA264_09640at 2246.219 kb on - strand, within CA264_09640at 2246.248 kb on - strand, within CA264_09640at 2246.255 kb on + strand, within CA264_09640at 2246.289 kb on + strand, within CA264_09640at 2246.290 kb on - strand, within CA264_09640at 2246.365 kb on - strandat 2246.384 kb on - strandat 2246.420 kb on + strandat 2246.495 kb on - strandat 2246.516 kb on + strandat 2246.608 kb on - strand, within CA264_09645at 2246.719 kb on - strand, within CA264_09645at 2246.728 kb on - strand, within CA264_09645at 2246.729 kb on + strand, within CA264_09645at 2246.741 kb on + strand, within CA264_09645at 2246.741 kb on + strand, within CA264_09645at 2246.847 kb on + strand, within CA264_09645at 2246.875 kb on + strandat 2246.876 kb on - strandat 2246.893 kb on + strandat 2246.901 kb on - strandat 2246.921 kb on + strandat 2246.922 kb on - strandat 2246.937 kb on + strandat 2246.937 kb on + strandat 2247.074 kb on - strand, within CA264_09650at 2247.079 kb on + strand, within CA264_09650at 2247.109 kb on - strand, within CA264_09650at 2247.109 kb on - strand, within CA264_09650at 2247.174 kb on - strand, within CA264_09650at 2247.174 kb on - strand, within CA264_09650at 2247.182 kb on - strand, within CA264_09650at 2247.282 kb on + strand, within CA264_09650at 2247.366 kb on - strand, within CA264_09650at 2247.443 kb on - strandat 2247.507 kb on + strandat 2247.580 kb on + strand, within CA264_09655at 2247.580 kb on + strand, within CA264_09655at 2247.580 kb on + strand, within CA264_09655at 2247.583 kb on - strand, within CA264_09655at 2247.583 kb on - strand, within CA264_09655at 2247.583 kb on - strand, within CA264_09655at 2247.583 kb on - strand, within CA264_09655at 2247.584 kb on + strand, within CA264_09655at 2247.584 kb on + strand, within CA264_09655at 2247.585 kb on - strand, within CA264_09655at 2247.585 kb on - strand, within CA264_09655at 2247.592 kb on - strand, within CA264_09655at 2247.592 kb on - strand, within CA264_09655at 2247.656 kb on + strand, within CA264_09655at 2247.666 kb on - strand, within CA264_09655at 2247.683 kb on - strand, within CA264_09655at 2247.689 kb on + strand, within CA264_09655at 2247.690 kb on - strand, within CA264_09655at 2247.697 kb on + strand, within CA264_09655at 2247.698 kb on - strand, within CA264_09655at 2247.720 kb on - strand, within CA264_09655at 2247.721 kb on + strand, within CA264_09655at 2247.722 kb on - strand, within CA264_09655at 2247.722 kb on - strand, within CA264_09655at 2247.722 kb on - strand, within CA264_09655at 2247.726 kb on + strand, within CA264_09655at 2247.726 kb on + strand, within CA264_09655at 2247.827 kb on - strand, within CA264_09655at 2247.828 kb on + strand, within CA264_09655at 2247.912 kb on + strandat 2247.913 kb on - strandat 2247.913 kb on - strandat 2247.924 kb on - strandat 2247.925 kb on + strandat 2247.925 kb on + strandat 2247.932 kb on + strandat 2247.932 kb on + strandat 2247.933 kb on - strandat 2247.933 kb on - strandat 2247.944 kb on - strandat 2247.948 kb on + strandat 2247.948 kb on + strandat 2247.949 kb on - strandat 2247.949 kb on - strandat 2247.957 kb on + strandat 2247.966 kb on + strandat 2247.974 kb on - strandat 2248.052 kb on + strandat 2248.063 kb on - strandat 2248.083 kb on - strandat 2248.084 kb on + strandat 2248.114 kb on + strandat 2248.122 kb on + strandat 2248.122 kb on + strandat 2248.123 kb on - strandat 2248.148 kb on - strand, within CA264_09660at 2248.156 kb on + strand, within CA264_09660at 2248.158 kb on + strand, within CA264_09660at 2248.166 kb on + strand, within CA264_09660at 2248.166 kb on + strand, within CA264_09660at 2248.166 kb on + strand, within CA264_09660at 2248.166 kb on + strand, within CA264_09660at 2248.167 kb on - strand, within CA264_09660at 2248.168 kb on + strand, within CA264_09660at 2248.168 kb on + strand, within CA264_09660at 2248.169 kb on - strand, within CA264_09660at 2248.169 kb on - strand, within CA264_09660at 2248.169 kb on - strand, within CA264_09660at 2248.176 kb on + strand, within CA264_09660at 2248.202 kb on + strand, within CA264_09660at 2248.203 kb on - strand, within CA264_09660at 2248.206 kb on + strand, within CA264_09660at 2248.212 kb on - strand, within CA264_09660at 2248.216 kb on + strand, within CA264_09660at 2248.217 kb on - strand, within CA264_09660at 2248.219 kb on - strand, within CA264_09660at 2248.253 kb on + strand, within CA264_09660at 2248.275 kb on - strand, within CA264_09660at 2248.275 kb on - strand, within CA264_09660at 2248.280 kb on + strand, within CA264_09660at 2248.298 kb on + strand, within CA264_09660at 2248.298 kb on + strand, within CA264_09660at 2248.299 kb on - strand, within CA264_09660at 2248.299 kb on - strand, within CA264_09660at 2248.299 kb on - strand, within CA264_09660at 2248.299 kb on - strand, within CA264_09660at 2248.299 kb on - strand, within CA264_09660at 2248.299 kb on - strand, within CA264_09660at 2248.301 kb on + strand, within CA264_09660at 2248.301 kb on + strand, within CA264_09660at 2248.302 kb on - strand, within CA264_09660at 2248.302 kb on - strand, within CA264_09660at 2248.329 kb on + strand, within CA264_09660at 2248.330 kb on - strand, within CA264_09660at 2248.388 kb on + strand, within CA264_09660at 2248.389 kb on - strand, within CA264_09660at 2248.396 kb on + strand, within CA264_09660at 2248.409 kb on - strand, within CA264_09660at 2248.410 kb on + strand, within CA264_09660at 2248.419 kb on + strand, within CA264_09660

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.035 mg/ml
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2,245,987 + CA264_09640 0.34 -0.6
2,245,987 + CA264_09640 0.34 -1.4
2,246,007 + CA264_09640 0.38 +0.0
2,246,022 + CA264_09640 0.40 -0.6
2,246,024 + CA264_09640 0.40 -0.4
2,246,031 + CA264_09640 0.41 -1.1
2,246,036 - CA264_09640 0.42 +2.2
2,246,047 + CA264_09640 0.44 +1.6
2,246,078 - CA264_09640 0.49 -0.5
2,246,078 - CA264_09640 0.49 -0.4
2,246,078 - CA264_09640 0.49 +2.5
2,246,083 - CA264_09640 0.50 -1.0
2,246,083 - CA264_09640 0.50 -1.7
2,246,102 - CA264_09640 0.53 -0.6
2,246,219 - CA264_09640 0.71 +1.1
2,246,248 - CA264_09640 0.75 -0.3
2,246,255 + CA264_09640 0.77 -0.1
2,246,289 + CA264_09640 0.82 +0.4
2,246,290 - CA264_09640 0.82 -0.7
2,246,365 - -0.4
2,246,384 - +1.2
2,246,420 + -1.3
2,246,495 - +0.2
2,246,516 + +1.9
2,246,608 - CA264_09645 0.29 +1.6
2,246,719 - CA264_09645 0.57 +0.2
2,246,728 - CA264_09645 0.59 +1.1
2,246,729 + CA264_09645 0.60 -0.9
2,246,741 + CA264_09645 0.63 -1.4
2,246,741 + CA264_09645 0.63 +0.6
2,246,847 + CA264_09645 0.89 -0.4
2,246,875 + -1.0
2,246,876 - +1.3
2,246,893 + +2.2
2,246,901 - -1.9
2,246,921 + +0.4
2,246,922 - -0.3
2,246,937 + +1.0
2,246,937 + -0.8
2,247,074 - CA264_09650 0.22 -1.5
2,247,079 + CA264_09650 0.23 +1.3
2,247,109 - CA264_09650 0.30 +0.3
2,247,109 - CA264_09650 0.30 -1.3
2,247,174 - CA264_09650 0.44 +3.0
2,247,174 - CA264_09650 0.44 -0.1
2,247,182 - CA264_09650 0.46 +0.2
2,247,282 + CA264_09650 0.67 +1.1
2,247,366 - CA264_09650 0.85 +0.7
2,247,443 - -1.1
2,247,507 + +1.4
2,247,580 + CA264_09655 0.17 +0.8
2,247,580 + CA264_09655 0.17 +0.6
2,247,580 + CA264_09655 0.17 -1.1
2,247,583 - CA264_09655 0.18 -1.1
2,247,583 - CA264_09655 0.18 +0.7
2,247,583 - CA264_09655 0.18 -1.1
2,247,583 - CA264_09655 0.18 -0.6
2,247,584 + CA264_09655 0.18 -0.2
2,247,584 + CA264_09655 0.18 -0.6
2,247,585 - CA264_09655 0.18 +2.8
2,247,585 - CA264_09655 0.18 +0.1
2,247,592 - CA264_09655 0.20 -1.8
2,247,592 - CA264_09655 0.20 -2.2
2,247,656 + CA264_09655 0.34 +0.8
2,247,666 - CA264_09655 0.37 -0.3
2,247,683 - CA264_09655 0.40 -2.4
2,247,689 + CA264_09655 0.42 +0.5
2,247,690 - CA264_09655 0.42 -0.8
2,247,697 + CA264_09655 0.44 +1.6
2,247,698 - CA264_09655 0.44 +2.7
2,247,720 - CA264_09655 0.49 -0.3
2,247,721 + CA264_09655 0.49 +0.1
2,247,722 - CA264_09655 0.49 -1.3
2,247,722 - CA264_09655 0.49 +2.2
2,247,722 - CA264_09655 0.49 -0.1
2,247,726 + CA264_09655 0.50 +1.1
2,247,726 + CA264_09655 0.50 -1.7
2,247,827 - CA264_09655 0.73 -0.9
2,247,828 + CA264_09655 0.74 -0.8
2,247,912 + -1.7
2,247,913 - -1.1
2,247,913 - +2.3
2,247,924 - +0.7
2,247,925 + +0.3
2,247,925 + -0.4
2,247,932 + -0.9
2,247,932 + -0.5
2,247,933 - -0.3
2,247,933 - -1.8
2,247,944 - -0.4
2,247,948 + -0.9
2,247,948 + +1.0
2,247,949 - -0.7
2,247,949 - -1.2
2,247,957 + +1.0
2,247,966 + -0.1
2,247,974 - +0.8
2,248,052 + -0.8
2,248,063 - +1.9
2,248,083 - +0.2
2,248,084 + +0.7
2,248,114 + -1.1
2,248,122 + -1.1
2,248,122 + -1.1
2,248,123 - +0.3
2,248,148 - CA264_09660 0.13 +0.7
2,248,156 + CA264_09660 0.14 +1.2
2,248,158 + CA264_09660 0.15 +0.2
2,248,166 + CA264_09660 0.16 +0.4
2,248,166 + CA264_09660 0.16 +1.6
2,248,166 + CA264_09660 0.16 +1.9
2,248,166 + CA264_09660 0.16 -0.7
2,248,167 - CA264_09660 0.16 -0.0
2,248,168 + CA264_09660 0.16 -0.8
2,248,168 + CA264_09660 0.16 +0.6
2,248,169 - CA264_09660 0.16 +0.7
2,248,169 - CA264_09660 0.16 -0.1
2,248,169 - CA264_09660 0.16 -0.7
2,248,176 + CA264_09660 0.18 -0.5
2,248,202 + CA264_09660 0.21 +0.5
2,248,203 - CA264_09660 0.22 -0.5
2,248,206 + CA264_09660 0.22 -1.7
2,248,212 - CA264_09660 0.23 +1.1
2,248,216 + CA264_09660 0.24 +0.2
2,248,217 - CA264_09660 0.24 -1.2
2,248,219 - CA264_09660 0.24 +2.7
2,248,253 + CA264_09660 0.29 -0.5
2,248,275 - CA264_09660 0.33 -1.3
2,248,275 - CA264_09660 0.33 -0.9
2,248,280 + CA264_09660 0.33 -2.9
2,248,298 + CA264_09660 0.36 -0.3
2,248,298 + CA264_09660 0.36 -1.4
2,248,299 - CA264_09660 0.36 -1.8
2,248,299 - CA264_09660 0.36 +0.8
2,248,299 - CA264_09660 0.36 +0.5
2,248,299 - CA264_09660 0.36 -2.8
2,248,299 - CA264_09660 0.36 -1.6
2,248,299 - CA264_09660 0.36 +0.0
2,248,301 + CA264_09660 0.37 +0.1
2,248,301 + CA264_09660 0.37 +0.6
2,248,302 - CA264_09660 0.37 +0.2
2,248,302 - CA264_09660 0.37 -0.5
2,248,329 + CA264_09660 0.41 -1.3
2,248,330 - CA264_09660 0.41 +0.7
2,248,388 + CA264_09660 0.50 -0.7
2,248,389 - CA264_09660 0.50 -1.2
2,248,396 + CA264_09660 0.51 +3.4
2,248,409 - CA264_09660 0.53 -0.4
2,248,410 + CA264_09660 0.53 -1.3
2,248,419 + CA264_09660 0.54 -2.1

Or see this region's nucleotide sequence