Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_09410

Experiment: m.b. Cisplatin 0.035 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_09395 and CA264_09400 are separated by 71 nucleotidesCA264_09400 and CA264_09405 are separated by 88 nucleotidesCA264_09405 and CA264_09410 are separated by 280 nucleotidesCA264_09410 and CA264_09415 are separated by 171 nucleotides CA264_09395: CA264_09395 - hypothetical protein, at 2,196,749 to 2,197,372 _09395 CA264_09400: CA264_09400 - hypothetical protein, at 2,197,444 to 2,197,671 _09400 CA264_09405: CA264_09405 - hypothetical protein, at 2,197,760 to 2,197,993 _09405 CA264_09410: CA264_09410 - recombinase RecQ, at 2,198,274 to 2,200,187 _09410 CA264_09415: CA264_09415 - hypothetical protein, at 2,200,359 to 2,201,153 _09415 Position (kb) 2198 2199 2200 2201Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2197.337 kb on - strandat 2197.367 kb on + strandat 2197.367 kb on + strandat 2197.372 kb on + strandat 2197.372 kb on + strandat 2197.373 kb on - strandat 2197.373 kb on - strandat 2197.444 kb on - strandat 2197.512 kb on - strand, within CA264_09400at 2197.519 kb on + strand, within CA264_09400at 2197.519 kb on + strand, within CA264_09400at 2197.520 kb on - strand, within CA264_09400at 2197.520 kb on - strand, within CA264_09400at 2197.575 kb on + strand, within CA264_09400at 2197.575 kb on + strand, within CA264_09400at 2197.576 kb on - strand, within CA264_09400at 2197.642 kb on + strand, within CA264_09400at 2197.734 kb on + strandat 2197.734 kb on + strandat 2197.738 kb on + strandat 2197.739 kb on - strandat 2197.745 kb on - strandat 2197.755 kb on + strandat 2197.755 kb on + strandat 2197.777 kb on - strandat 2197.842 kb on + strand, within CA264_09405at 2197.842 kb on + strand, within CA264_09405at 2197.842 kb on + strand, within CA264_09405at 2197.842 kb on + strand, within CA264_09405at 2197.897 kb on + strand, within CA264_09405at 2197.912 kb on + strand, within CA264_09405at 2197.913 kb on - strand, within CA264_09405at 2197.914 kb on + strand, within CA264_09405at 2197.914 kb on + strand, within CA264_09405at 2197.947 kb on + strand, within CA264_09405at 2197.948 kb on - strand, within CA264_09405at 2197.991 kb on + strandat 2197.991 kb on + strandat 2198.018 kb on - strandat 2198.019 kb on + strandat 2198.020 kb on - strandat 2198.095 kb on + strandat 2198.096 kb on - strandat 2198.112 kb on + strandat 2198.272 kb on + strandat 2198.312 kb on + strandat 2198.312 kb on + strandat 2198.313 kb on - strandat 2198.404 kb on + strandat 2198.404 kb on + strandat 2198.404 kb on + strandat 2200.167 kb on + strandat 2200.167 kb on + strandat 2200.167 kb on + strandat 2200.203 kb on - strandat 2200.207 kb on + strandat 2200.294 kb on + strandat 2200.309 kb on - strandat 2200.309 kb on - strandat 2200.339 kb on + strandat 2200.345 kb on + strandat 2200.354 kb on + strandat 2200.458 kb on - strand, within CA264_09415at 2200.515 kb on - strand, within CA264_09415at 2200.544 kb on - strand, within CA264_09415at 2200.682 kb on - strand, within CA264_09415at 2200.703 kb on + strand, within CA264_09415at 2200.726 kb on - strand, within CA264_09415at 2200.757 kb on + strand, within CA264_09415at 2200.781 kb on + strand, within CA264_09415at 2200.807 kb on + strand, within CA264_09415at 2200.807 kb on + strand, within CA264_09415at 2200.954 kb on - strand, within CA264_09415at 2200.999 kb on + strand, within CA264_09415at 2200.999 kb on + strand, within CA264_09415at 2200.999 kb on + strand, within CA264_09415at 2201.013 kb on + strand, within CA264_09415at 2201.015 kb on + strand, within CA264_09415at 2201.091 kb on + strandat 2201.091 kb on + strandat 2201.091 kb on + strandat 2201.092 kb on - strandat 2201.139 kb on - strandat 2201.174 kb on - strandat 2201.174 kb on - strandat 2201.179 kb on - strandat 2201.182 kb on + strandat 2201.183 kb on - strandat 2201.183 kb on - strandat 2201.185 kb on - strandat 2201.185 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.035 mg/ml
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2,197,337 - -1.3
2,197,367 + +1.1
2,197,367 + +2.9
2,197,372 + -0.7
2,197,372 + +0.8
2,197,373 - -0.9
2,197,373 - -0.8
2,197,444 - +1.8
2,197,512 - CA264_09400 0.30 -0.2
2,197,519 + CA264_09400 0.33 +1.9
2,197,519 + CA264_09400 0.33 +0.6
2,197,520 - CA264_09400 0.33 -2.7
2,197,520 - CA264_09400 0.33 -0.5
2,197,575 + CA264_09400 0.57 -2.1
2,197,575 + CA264_09400 0.57 +1.5
2,197,576 - CA264_09400 0.58 -1.8
2,197,642 + CA264_09400 0.87 -1.2
2,197,734 + -1.4
2,197,734 + -1.4
2,197,738 + -0.2
2,197,739 - -0.4
2,197,745 - +0.3
2,197,755 + -1.9
2,197,755 + -0.1
2,197,777 - -1.2
2,197,842 + CA264_09405 0.35 +1.9
2,197,842 + CA264_09405 0.35 -2.4
2,197,842 + CA264_09405 0.35 +1.3
2,197,842 + CA264_09405 0.35 +4.6
2,197,897 + CA264_09405 0.59 -0.0
2,197,912 + CA264_09405 0.65 -0.6
2,197,913 - CA264_09405 0.65 +0.1
2,197,914 + CA264_09405 0.66 +2.2
2,197,914 + CA264_09405 0.66 -2.8
2,197,947 + CA264_09405 0.80 +0.1
2,197,948 - CA264_09405 0.80 +1.4
2,197,991 + +0.6
2,197,991 + +2.9
2,198,018 - -0.7
2,198,019 + -1.5
2,198,020 - -1.3
2,198,095 + +0.0
2,198,096 - +0.5
2,198,112 + +0.2
2,198,272 + +0.8
2,198,312 + -1.7
2,198,312 + +0.3
2,198,313 - -0.1
2,198,404 + +0.0
2,198,404 + -0.2
2,198,404 + -0.5
2,200,167 + +2.6
2,200,167 + -0.6
2,200,167 + +1.0
2,200,203 - +0.5
2,200,207 + +0.3
2,200,294 + -1.0
2,200,309 - +0.8
2,200,309 - +2.7
2,200,339 + +0.8
2,200,345 + -1.8
2,200,354 + -0.5
2,200,458 - CA264_09415 0.12 +0.8
2,200,515 - CA264_09415 0.20 +0.6
2,200,544 - CA264_09415 0.23 +0.5
2,200,682 - CA264_09415 0.41 -0.7
2,200,703 + CA264_09415 0.43 +0.1
2,200,726 - CA264_09415 0.46 +0.2
2,200,757 + CA264_09415 0.50 -0.9
2,200,781 + CA264_09415 0.53 -0.1
2,200,807 + CA264_09415 0.56 +1.1
2,200,807 + CA264_09415 0.56 -0.8
2,200,954 - CA264_09415 0.75 -1.3
2,200,999 + CA264_09415 0.81 -0.4
2,200,999 + CA264_09415 0.81 -1.0
2,200,999 + CA264_09415 0.81 +0.2
2,201,013 + CA264_09415 0.82 +0.1
2,201,015 + CA264_09415 0.83 -0.4
2,201,091 + -0.5
2,201,091 + +0.2
2,201,091 + +1.2
2,201,092 - +1.1
2,201,139 - -0.1
2,201,174 - +0.8
2,201,174 - -1.2
2,201,179 - -1.0
2,201,182 + +0.4
2,201,183 - -0.4
2,201,183 - -1.3
2,201,185 - +0.2
2,201,185 - -1.2

Or see this region's nucleotide sequence