Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_09280

Experiment: m.b. Cisplatin 0.035 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_09275 and CA264_09280 are separated by 174 nucleotidesCA264_09280 and CA264_09285 are separated by 54 nucleotidesCA264_09285 and CA264_09290 are separated by 15 nucleotides CA264_09275: CA264_09275 - epimerase, at 2,169,967 to 2,171,439 _09275 CA264_09280: CA264_09280 - phosphoribosylaminoimidazolesuccinocarboxamide synthase, at 2,171,614 to 2,172,561 _09280 CA264_09285: CA264_09285 - anti-anti-sigma factor, at 2,172,616 to 2,172,993 _09285 CA264_09290: CA264_09290 - ribonuclease Z, at 2,173,009 to 2,173,926 _09290 Position (kb) 2171 2172 2173Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 2170.657 kb on + strand, within CA264_09275at 2170.657 kb on + strand, within CA264_09275at 2170.665 kb on - strand, within CA264_09275at 2170.708 kb on + strand, within CA264_09275at 2170.709 kb on - strand, within CA264_09275at 2170.729 kb on + strand, within CA264_09275at 2170.730 kb on - strand, within CA264_09275at 2170.794 kb on - strand, within CA264_09275at 2170.825 kb on + strand, within CA264_09275at 2170.826 kb on - strand, within CA264_09275at 2170.924 kb on + strand, within CA264_09275at 2170.924 kb on + strand, within CA264_09275at 2170.924 kb on + strand, within CA264_09275at 2170.925 kb on - strand, within CA264_09275at 2171.047 kb on + strand, within CA264_09275at 2171.050 kb on - strand, within CA264_09275at 2171.254 kb on - strand, within CA264_09275at 2171.254 kb on - strand, within CA264_09275at 2171.254 kb on - strand, within CA264_09275at 2171.437 kb on + strandat 2171.438 kb on - strandat 2171.459 kb on - strandat 2171.461 kb on - strandat 2171.461 kb on - strandat 2171.466 kb on - strandat 2171.473 kb on + strandat 2171.479 kb on + strandat 2171.491 kb on + strandat 2171.491 kb on + strandat 2171.513 kb on + strandat 2171.578 kb on + strandat 2171.578 kb on + strandat 2171.582 kb on + strandat 2171.597 kb on - strandat 2171.613 kb on - strandat 2171.771 kb on - strand, within CA264_09280at 2171.784 kb on - strand, within CA264_09280at 2171.843 kb on + strand, within CA264_09280at 2171.895 kb on + strand, within CA264_09280at 2171.947 kb on + strand, within CA264_09280at 2171.948 kb on - strand, within CA264_09280at 2172.104 kb on + strand, within CA264_09280at 2172.104 kb on + strand, within CA264_09280at 2172.104 kb on + strand, within CA264_09280at 2172.105 kb on - strand, within CA264_09280at 2172.208 kb on + strand, within CA264_09280at 2172.225 kb on + strand, within CA264_09280at 2172.284 kb on - strand, within CA264_09280at 2172.446 kb on - strand, within CA264_09280at 2172.450 kb on - strand, within CA264_09280at 2172.450 kb on - strand, within CA264_09280at 2172.457 kb on + strand, within CA264_09280at 2172.458 kb on - strand, within CA264_09280at 2172.498 kb on + strandat 2172.499 kb on - strandat 2172.499 kb on - strandat 2172.584 kb on - strandat 2172.596 kb on - strandat 2172.610 kb on + strandat 2172.611 kb on - strandat 2172.629 kb on + strandat 2172.633 kb on + strandat 2172.662 kb on + strand, within CA264_09285at 2172.681 kb on + strand, within CA264_09285at 2172.772 kb on + strand, within CA264_09285at 2172.791 kb on + strand, within CA264_09285at 2172.792 kb on - strand, within CA264_09285at 2172.799 kb on - strand, within CA264_09285at 2172.981 kb on + strandat 2172.982 kb on - strandat 2172.992 kb on - strandat 2173.086 kb on - strandat 2173.103 kb on - strand, within CA264_09290at 2173.157 kb on + strand, within CA264_09290at 2173.210 kb on + strand, within CA264_09290at 2173.321 kb on + strand, within CA264_09290at 2173.388 kb on + strand, within CA264_09290at 2173.388 kb on + strand, within CA264_09290at 2173.389 kb on - strand, within CA264_09290at 2173.412 kb on + strand, within CA264_09290

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.035 mg/ml
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2,170,657 + CA264_09275 0.47 -0.8
2,170,657 + CA264_09275 0.47 +0.2
2,170,665 - CA264_09275 0.47 -0.2
2,170,708 + CA264_09275 0.50 -1.4
2,170,709 - CA264_09275 0.50 -0.5
2,170,729 + CA264_09275 0.52 -0.9
2,170,730 - CA264_09275 0.52 -1.9
2,170,794 - CA264_09275 0.56 -0.5
2,170,825 + CA264_09275 0.58 +1.4
2,170,826 - CA264_09275 0.58 +1.5
2,170,924 + CA264_09275 0.65 +2.0
2,170,924 + CA264_09275 0.65 -0.8
2,170,924 + CA264_09275 0.65 -0.7
2,170,925 - CA264_09275 0.65 -1.0
2,171,047 + CA264_09275 0.73 -0.7
2,171,050 - CA264_09275 0.74 -3.0
2,171,254 - CA264_09275 0.87 -0.2
2,171,254 - CA264_09275 0.87 +0.1
2,171,254 - CA264_09275 0.87 -2.6
2,171,437 + +1.1
2,171,438 - -1.2
2,171,459 - -0.9
2,171,461 - -2.1
2,171,461 - +6.2
2,171,466 - -1.3
2,171,473 + +0.3
2,171,479 + +3.4
2,171,491 + -0.6
2,171,491 + +0.0
2,171,513 + -0.7
2,171,578 + +1.4
2,171,578 + +0.4
2,171,582 + +1.9
2,171,597 - -1.4
2,171,613 - -0.1
2,171,771 - CA264_09280 0.17 -1.1
2,171,784 - CA264_09280 0.18 +0.2
2,171,843 + CA264_09280 0.24 -1.4
2,171,895 + CA264_09280 0.30 +2.9
2,171,947 + CA264_09280 0.35 -0.4
2,171,948 - CA264_09280 0.35 +2.6
2,172,104 + CA264_09280 0.52 +1.6
2,172,104 + CA264_09280 0.52 -0.2
2,172,104 + CA264_09280 0.52 -0.1
2,172,105 - CA264_09280 0.52 -1.1
2,172,208 + CA264_09280 0.63 -2.1
2,172,225 + CA264_09280 0.64 +2.1
2,172,284 - CA264_09280 0.71 -0.6
2,172,446 - CA264_09280 0.88 +1.4
2,172,450 - CA264_09280 0.88 +0.5
2,172,450 - CA264_09280 0.88 +1.1
2,172,457 + CA264_09280 0.89 +0.3
2,172,458 - CA264_09280 0.89 -0.3
2,172,498 + +0.7
2,172,499 - -1.8
2,172,499 - -2.0
2,172,584 - -1.3
2,172,596 - -1.8
2,172,610 + -0.9
2,172,611 - -1.1
2,172,629 + -0.6
2,172,633 + +0.4
2,172,662 + CA264_09285 0.12 -1.1
2,172,681 + CA264_09285 0.17 -1.5
2,172,772 + CA264_09285 0.41 +0.9
2,172,791 + CA264_09285 0.46 -0.6
2,172,792 - CA264_09285 0.47 +0.2
2,172,799 - CA264_09285 0.48 -0.2
2,172,981 + -0.5
2,172,982 - +1.9
2,172,992 - -1.1
2,173,086 - -0.1
2,173,103 - CA264_09290 0.10 +0.8
2,173,157 + CA264_09290 0.16 -0.4
2,173,210 + CA264_09290 0.22 -0.6
2,173,321 + CA264_09290 0.34 +0.4
2,173,388 + CA264_09290 0.41 +0.0
2,173,388 + CA264_09290 0.41 +0.3
2,173,389 - CA264_09290 0.41 -0.5
2,173,412 + CA264_09290 0.44 +1.2

Or see this region's nucleotide sequence