Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_09140

Experiment: m.b. Cisplatin 0.035 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_09135 and CA264_09140 are separated by 180 nucleotidesCA264_09140 and CA264_09145 are separated by 442 nucleotides CA264_09135: CA264_09135 - peptidase S8 and S53 subtilisin kexin sedolisin, at 2,141,184 to 2,142,713 _09135 CA264_09140: CA264_09140 - chloramphenicol acetyltransferase, at 2,142,894 to 2,143,544 _09140 CA264_09145: CA264_09145 - ammonia channel protein, at 2,143,987 to 2,145,348 _09145 Position (kb) 2142 2143 2144Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2142.163 kb on - strand, within CA264_09135at 2142.163 kb on - strand, within CA264_09135at 2142.163 kb on - strand, within CA264_09135at 2142.314 kb on + strand, within CA264_09135at 2142.317 kb on + strand, within CA264_09135at 2142.336 kb on - strand, within CA264_09135at 2142.355 kb on - strand, within CA264_09135at 2142.396 kb on + strand, within CA264_09135at 2142.396 kb on + strand, within CA264_09135at 2142.396 kb on + strand, within CA264_09135at 2142.397 kb on - strand, within CA264_09135at 2142.397 kb on - strand, within CA264_09135at 2142.397 kb on - strand, within CA264_09135at 2142.397 kb on - strand, within CA264_09135at 2142.397 kb on - strand, within CA264_09135at 2142.400 kb on + strand, within CA264_09135at 2142.401 kb on - strand, within CA264_09135at 2142.401 kb on - strand, within CA264_09135at 2142.401 kb on - strand, within CA264_09135at 2142.401 kb on - strand, within CA264_09135at 2142.402 kb on + strand, within CA264_09135at 2142.428 kb on - strand, within CA264_09135at 2142.445 kb on - strand, within CA264_09135at 2142.445 kb on - strand, within CA264_09135at 2142.450 kb on + strand, within CA264_09135at 2142.451 kb on - strand, within CA264_09135at 2142.462 kb on + strand, within CA264_09135at 2142.462 kb on + strand, within CA264_09135at 2142.463 kb on - strand, within CA264_09135at 2142.463 kb on - strand, within CA264_09135at 2142.471 kb on - strand, within CA264_09135at 2142.507 kb on + strand, within CA264_09135at 2142.507 kb on + strand, within CA264_09135at 2142.511 kb on - strand, within CA264_09135at 2142.511 kb on - strand, within CA264_09135at 2142.531 kb on - strand, within CA264_09135at 2142.663 kb on + strandat 2142.663 kb on + strandat 2142.663 kb on + strandat 2142.664 kb on - strandat 2142.664 kb on - strandat 2142.666 kb on + strandat 2142.666 kb on + strandat 2142.723 kb on + strandat 2142.723 kb on + strandat 2142.724 kb on - strandat 2142.724 kb on - strandat 2142.724 kb on - strandat 2142.778 kb on + strandat 2142.798 kb on + strandat 2142.845 kb on - strandat 2142.875 kb on - strandat 2142.882 kb on - strandat 2142.906 kb on + strandat 2142.975 kb on - strand, within CA264_09140at 2143.006 kb on + strand, within CA264_09140at 2143.006 kb on + strand, within CA264_09140at 2143.023 kb on + strand, within CA264_09140at 2143.024 kb on - strand, within CA264_09140at 2143.143 kb on + strand, within CA264_09140at 2143.191 kb on - strand, within CA264_09140at 2143.290 kb on + strand, within CA264_09140at 2143.291 kb on - strand, within CA264_09140at 2143.291 kb on - strand, within CA264_09140at 2143.297 kb on - strand, within CA264_09140at 2143.297 kb on - strand, within CA264_09140at 2143.315 kb on + strand, within CA264_09140at 2143.367 kb on + strand, within CA264_09140at 2143.441 kb on + strand, within CA264_09140at 2143.460 kb on - strand, within CA264_09140at 2143.509 kb on + strandat 2143.522 kb on + strandat 2143.543 kb on - strandat 2143.551 kb on - strandat 2143.551 kb on - strandat 2143.556 kb on + strandat 2143.732 kb on + strandat 2143.791 kb on - strandat 2144.072 kb on + strandat 2144.090 kb on + strandat 2144.091 kb on - strandat 2144.167 kb on + strand, within CA264_09145at 2144.167 kb on + strand, within CA264_09145at 2144.196 kb on - strand, within CA264_09145at 2144.196 kb on - strand, within CA264_09145at 2144.221 kb on - strand, within CA264_09145at 2144.323 kb on - strand, within CA264_09145at 2144.430 kb on + strand, within CA264_09145at 2144.464 kb on - strand, within CA264_09145at 2144.470 kb on + strand, within CA264_09145at 2144.471 kb on - strand, within CA264_09145at 2144.471 kb on - strand, within CA264_09145at 2144.472 kb on + strand, within CA264_09145at 2144.506 kb on + strand, within CA264_09145

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.035 mg/ml
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2,142,163 - CA264_09135 0.64 -0.6
2,142,163 - CA264_09135 0.64 +2.2
2,142,163 - CA264_09135 0.64 +1.6
2,142,314 + CA264_09135 0.74 -0.5
2,142,317 + CA264_09135 0.74 -0.7
2,142,336 - CA264_09135 0.75 +2.1
2,142,355 - CA264_09135 0.77 -1.2
2,142,396 + CA264_09135 0.79 -0.6
2,142,396 + CA264_09135 0.79 +0.6
2,142,396 + CA264_09135 0.79 +1.4
2,142,397 - CA264_09135 0.79 +2.4
2,142,397 - CA264_09135 0.79 +0.8
2,142,397 - CA264_09135 0.79 -0.3
2,142,397 - CA264_09135 0.79 -1.3
2,142,397 - CA264_09135 0.79 -1.6
2,142,400 + CA264_09135 0.79 +0.9
2,142,401 - CA264_09135 0.80 +0.3
2,142,401 - CA264_09135 0.80 +2.4
2,142,401 - CA264_09135 0.80 -0.2
2,142,401 - CA264_09135 0.80 -1.4
2,142,402 + CA264_09135 0.80 -1.7
2,142,428 - CA264_09135 0.81 -1.1
2,142,445 - CA264_09135 0.82 -0.1
2,142,445 - CA264_09135 0.82 +2.4
2,142,450 + CA264_09135 0.83 +0.4
2,142,451 - CA264_09135 0.83 -0.9
2,142,462 + CA264_09135 0.84 +0.5
2,142,462 + CA264_09135 0.84 +0.7
2,142,463 - CA264_09135 0.84 -0.8
2,142,463 - CA264_09135 0.84 +0.6
2,142,471 - CA264_09135 0.84 +0.7
2,142,507 + CA264_09135 0.86 -0.1
2,142,507 + CA264_09135 0.86 +3.9
2,142,511 - CA264_09135 0.87 +2.2
2,142,511 - CA264_09135 0.87 +0.6
2,142,531 - CA264_09135 0.88 -1.0
2,142,663 + +1.4
2,142,663 + -0.2
2,142,663 + -0.6
2,142,664 - +0.9
2,142,664 - -0.4
2,142,666 + -1.6
2,142,666 + +0.1
2,142,723 + -0.7
2,142,723 + -1.8
2,142,724 - -0.7
2,142,724 - -1.3
2,142,724 - -0.2
2,142,778 + +2.1
2,142,798 + +0.6
2,142,845 - -0.1
2,142,875 - +0.4
2,142,882 - -1.5
2,142,906 + +1.4
2,142,975 - CA264_09140 0.12 +1.4
2,143,006 + CA264_09140 0.17 +4.6
2,143,006 + CA264_09140 0.17 -1.1
2,143,023 + CA264_09140 0.20 -0.5
2,143,024 - CA264_09140 0.20 -0.4
2,143,143 + CA264_09140 0.38 +0.1
2,143,191 - CA264_09140 0.46 -0.9
2,143,290 + CA264_09140 0.61 -1.5
2,143,291 - CA264_09140 0.61 +1.1
2,143,291 - CA264_09140 0.61 -0.3
2,143,297 - CA264_09140 0.62 -1.6
2,143,297 - CA264_09140 0.62 -0.7
2,143,315 + CA264_09140 0.65 -1.8
2,143,367 + CA264_09140 0.73 +0.8
2,143,441 + CA264_09140 0.84 +0.8
2,143,460 - CA264_09140 0.87 +0.4
2,143,509 + -0.8
2,143,522 + +0.9
2,143,543 - -0.1
2,143,551 - +0.6
2,143,551 - -0.1
2,143,556 + +0.5
2,143,732 + -0.8
2,143,791 - -0.7
2,144,072 + -2.4
2,144,090 + +1.4
2,144,091 - -0.7
2,144,167 + CA264_09145 0.13 -1.2
2,144,167 + CA264_09145 0.13 -0.7
2,144,196 - CA264_09145 0.15 -0.5
2,144,196 - CA264_09145 0.15 +0.2
2,144,221 - CA264_09145 0.17 -1.4
2,144,323 - CA264_09145 0.25 +0.6
2,144,430 + CA264_09145 0.33 -1.6
2,144,464 - CA264_09145 0.35 -1.6
2,144,470 + CA264_09145 0.35 -0.7
2,144,471 - CA264_09145 0.36 -0.2
2,144,471 - CA264_09145 0.36 +0.4
2,144,472 + CA264_09145 0.36 -1.4
2,144,506 + CA264_09145 0.38 +0.9

Or see this region's nucleotide sequence