Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_05505

Experiment: m.b. Cisplatin 0.035 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_05495 and CA264_05500 are separated by 78 nucleotidesCA264_05500 and CA264_05505 are separated by 170 nucleotidesCA264_05505 and CA264_05510 are separated by 2 nucleotidesCA264_05510 and CA264_05515 are separated by 62 nucleotides CA264_05495: CA264_05495 - peptide-methionine (S)-S-oxide reductase, at 1,277,959 to 1,278,633 _05495 CA264_05500: CA264_05500 - hypothetical protein, at 1,278,712 to 1,279,110 _05500 CA264_05505: CA264_05505 - hypothetical protein, at 1,279,281 to 1,279,709 _05505 CA264_05510: CA264_05510 - UDP-glucose 4-epimerase, at 1,279,712 to 1,280,077 _05510 CA264_05515: CA264_05515 - aldehyde dehydrogenase, at 1,280,140 to 1,281,672 _05515 Position (kb) 1279 1280Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1278.286 kb on + strand, within CA264_05495at 1278.287 kb on - strand, within CA264_05495at 1278.287 kb on - strand, within CA264_05495at 1278.367 kb on + strand, within CA264_05495at 1278.385 kb on + strand, within CA264_05495at 1278.421 kb on + strand, within CA264_05495at 1278.421 kb on + strand, within CA264_05495at 1278.422 kb on - strand, within CA264_05495at 1278.422 kb on - strand, within CA264_05495at 1278.425 kb on + strand, within CA264_05495at 1278.472 kb on + strand, within CA264_05495at 1278.472 kb on + strand, within CA264_05495at 1278.472 kb on + strand, within CA264_05495at 1278.473 kb on - strand, within CA264_05495at 1278.473 kb on - strand, within CA264_05495at 1278.477 kb on - strand, within CA264_05495at 1278.477 kb on - strand, within CA264_05495at 1278.477 kb on - strand, within CA264_05495at 1278.550 kb on + strand, within CA264_05495at 1278.551 kb on - strand, within CA264_05495at 1278.551 kb on - strand, within CA264_05495at 1278.551 kb on - strand, within CA264_05495at 1278.551 kb on - strand, within CA264_05495at 1278.551 kb on - strand, within CA264_05495at 1278.554 kb on + strand, within CA264_05495at 1278.632 kb on - strandat 1278.642 kb on + strandat 1278.642 kb on + strandat 1278.643 kb on - strandat 1278.669 kb on + strandat 1278.700 kb on + strandat 1278.701 kb on - strandat 1278.705 kb on + strandat 1278.705 kb on + strandat 1278.706 kb on - strandat 1278.712 kb on - strandat 1278.731 kb on + strandat 1278.749 kb on + strandat 1278.767 kb on - strand, within CA264_05500at 1278.915 kb on + strand, within CA264_05500at 1278.971 kb on + strand, within CA264_05500at 1279.061 kb on - strand, within CA264_05500at 1279.117 kb on + strandat 1279.123 kb on - strandat 1279.123 kb on - strandat 1279.168 kb on + strandat 1279.222 kb on - strandat 1279.227 kb on + strandat 1279.227 kb on + strandat 1279.284 kb on + strandat 1279.297 kb on - strandat 1279.313 kb on - strandat 1279.450 kb on + strand, within CA264_05505at 1279.462 kb on - strand, within CA264_05505at 1279.466 kb on + strand, within CA264_05505at 1279.466 kb on + strand, within CA264_05505at 1279.471 kb on + strand, within CA264_05505at 1279.471 kb on + strand, within CA264_05505at 1279.550 kb on + strand, within CA264_05505at 1279.551 kb on - strand, within CA264_05505at 1279.551 kb on - strand, within CA264_05505at 1279.551 kb on - strand, within CA264_05505at 1279.581 kb on + strand, within CA264_05505at 1279.581 kb on + strand, within CA264_05505at 1279.582 kb on - strand, within CA264_05505at 1279.584 kb on - strand, within CA264_05505at 1279.688 kb on + strandat 1279.689 kb on - strandat 1279.747 kb on + strandat 1279.878 kb on + strand, within CA264_05510at 1279.894 kb on - strand, within CA264_05510at 1279.894 kb on - strand, within CA264_05510at 1279.954 kb on + strand, within CA264_05510at 1279.954 kb on + strand, within CA264_05510at 1279.955 kb on - strand, within CA264_05510at 1279.955 kb on - strand, within CA264_05510at 1279.955 kb on - strand, within CA264_05510at 1280.057 kb on + strandat 1280.088 kb on + strandat 1280.176 kb on - strandat 1280.176 kb on - strandat 1280.379 kb on - strand, within CA264_05515at 1280.507 kb on - strand, within CA264_05515at 1280.510 kb on + strand, within CA264_05515at 1280.510 kb on + strand, within CA264_05515at 1280.510 kb on + strand, within CA264_05515at 1280.511 kb on - strand, within CA264_05515at 1280.511 kb on - strand, within CA264_05515at 1280.511 kb on - strand, within CA264_05515at 1280.511 kb on - strand, within CA264_05515at 1280.511 kb on - strand, within CA264_05515at 1280.511 kb on - strand, within CA264_05515at 1280.597 kb on + strand, within CA264_05515at 1280.597 kb on + strand, within CA264_05515at 1280.598 kb on - strand, within CA264_05515at 1280.598 kb on - strand, within CA264_05515at 1280.606 kb on - strand, within CA264_05515at 1280.671 kb on + strand, within CA264_05515

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.035 mg/ml
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1,278,286 + CA264_05495 0.48 +0.1
1,278,287 - CA264_05495 0.49 +1.4
1,278,287 - CA264_05495 0.49 -0.8
1,278,367 + CA264_05495 0.60 -0.6
1,278,385 + CA264_05495 0.63 -0.4
1,278,421 + CA264_05495 0.68 -0.2
1,278,421 + CA264_05495 0.68 +1.2
1,278,422 - CA264_05495 0.69 +2.3
1,278,422 - CA264_05495 0.69 -0.7
1,278,425 + CA264_05495 0.69 -1.7
1,278,472 + CA264_05495 0.76 +1.4
1,278,472 + CA264_05495 0.76 -0.1
1,278,472 + CA264_05495 0.76 -0.9
1,278,473 - CA264_05495 0.76 -0.8
1,278,473 - CA264_05495 0.76 +0.3
1,278,477 - CA264_05495 0.77 -0.9
1,278,477 - CA264_05495 0.77 -0.8
1,278,477 - CA264_05495 0.77 -1.2
1,278,550 + CA264_05495 0.88 -0.8
1,278,551 - CA264_05495 0.88 -1.6
1,278,551 - CA264_05495 0.88 +3.2
1,278,551 - CA264_05495 0.88 +0.0
1,278,551 - CA264_05495 0.88 +1.0
1,278,551 - CA264_05495 0.88 +0.9
1,278,554 + CA264_05495 0.88 -1.0
1,278,632 - -1.0
1,278,642 + -1.0
1,278,642 + -0.4
1,278,643 - +0.8
1,278,669 + +0.6
1,278,700 + -0.5
1,278,701 - +0.0
1,278,705 + +1.0
1,278,705 + +1.1
1,278,706 - +1.4
1,278,712 - +0.0
1,278,731 + -0.5
1,278,749 + -0.2
1,278,767 - CA264_05500 0.14 +0.3
1,278,915 + CA264_05500 0.51 -1.5
1,278,971 + CA264_05500 0.65 +2.0
1,279,061 - CA264_05500 0.87 +0.9
1,279,117 + -0.7
1,279,123 - -0.6
1,279,123 - -1.5
1,279,168 + +0.7
1,279,222 - +0.4
1,279,227 + +1.1
1,279,227 + +0.3
1,279,284 + -0.5
1,279,297 - -1.0
1,279,313 - -0.4
1,279,450 + CA264_05505 0.39 -0.2
1,279,462 - CA264_05505 0.42 +0.1
1,279,466 + CA264_05505 0.43 -0.4
1,279,466 + CA264_05505 0.43 +0.1
1,279,471 + CA264_05505 0.44 -0.7
1,279,471 + CA264_05505 0.44 +1.0
1,279,550 + CA264_05505 0.63 +1.0
1,279,551 - CA264_05505 0.63 -0.9
1,279,551 - CA264_05505 0.63 +1.2
1,279,551 - CA264_05505 0.63 -2.4
1,279,581 + CA264_05505 0.70 -0.2
1,279,581 + CA264_05505 0.70 -0.5
1,279,582 - CA264_05505 0.70 -0.4
1,279,584 - CA264_05505 0.71 -0.7
1,279,688 + -0.7
1,279,689 - +0.0
1,279,747 + -1.6
1,279,878 + CA264_05510 0.45 -0.4
1,279,894 - CA264_05510 0.50 -0.8
1,279,894 - CA264_05510 0.50 -2.0
1,279,954 + CA264_05510 0.66 -0.8
1,279,954 + CA264_05510 0.66 -1.5
1,279,955 - CA264_05510 0.66 -0.2
1,279,955 - CA264_05510 0.66 +3.6
1,279,955 - CA264_05510 0.66 -1.9
1,280,057 + +1.0
1,280,088 + +0.1
1,280,176 - -0.6
1,280,176 - -1.4
1,280,379 - CA264_05515 0.16 -2.2
1,280,507 - CA264_05515 0.24 +1.0
1,280,510 + CA264_05515 0.24 -1.5
1,280,510 + CA264_05515 0.24 +0.7
1,280,510 + CA264_05515 0.24 -0.7
1,280,511 - CA264_05515 0.24 +0.1
1,280,511 - CA264_05515 0.24 -2.3
1,280,511 - CA264_05515 0.24 +0.3
1,280,511 - CA264_05515 0.24 -0.7
1,280,511 - CA264_05515 0.24 +0.3
1,280,511 - CA264_05515 0.24 -1.0
1,280,597 + CA264_05515 0.30 -0.9
1,280,597 + CA264_05515 0.30 -0.2
1,280,598 - CA264_05515 0.30 -0.9
1,280,598 - CA264_05515 0.30 -1.7
1,280,606 - CA264_05515 0.30 +1.1
1,280,671 + CA264_05515 0.35 -0.8

Or see this region's nucleotide sequence