Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_05495

Experiment: m.b. Cisplatin 0.035 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_05490 and CA264_05495 are separated by 73 nucleotidesCA264_05495 and CA264_05500 are separated by 78 nucleotidesCA264_05500 and CA264_05505 are separated by 170 nucleotides CA264_05490: CA264_05490 - hypothetical protein, at 1,277,013 to 1,277,885 _05490 CA264_05495: CA264_05495 - peptide-methionine (S)-S-oxide reductase, at 1,277,959 to 1,278,633 _05495 CA264_05500: CA264_05500 - hypothetical protein, at 1,278,712 to 1,279,110 _05500 CA264_05505: CA264_05505 - hypothetical protein, at 1,279,281 to 1,279,709 _05505 Position (kb) 1277 1278 1279Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 1276.998 kb on - strandat 1277.014 kb on + strandat 1277.081 kb on + strandat 1277.121 kb on + strand, within CA264_05490at 1277.161 kb on - strand, within CA264_05490at 1277.161 kb on - strand, within CA264_05490at 1277.161 kb on - strand, within CA264_05490at 1277.255 kb on - strand, within CA264_05490at 1277.321 kb on + strand, within CA264_05490at 1277.322 kb on - strand, within CA264_05490at 1277.328 kb on + strand, within CA264_05490at 1277.377 kb on + strand, within CA264_05490at 1277.377 kb on + strand, within CA264_05490at 1277.378 kb on - strand, within CA264_05490at 1277.464 kb on + strand, within CA264_05490at 1277.465 kb on - strand, within CA264_05490at 1277.527 kb on + strand, within CA264_05490at 1277.557 kb on - strand, within CA264_05490at 1277.573 kb on - strand, within CA264_05490at 1277.781 kb on + strand, within CA264_05490at 1277.781 kb on + strand, within CA264_05490at 1277.787 kb on + strand, within CA264_05490at 1277.788 kb on - strand, within CA264_05490at 1277.844 kb on + strandat 1277.856 kb on - strandat 1277.857 kb on + strandat 1277.858 kb on - strandat 1277.870 kb on + strandat 1277.890 kb on + strandat 1277.935 kb on + strandat 1277.936 kb on - strandat 1277.936 kb on - strandat 1277.938 kb on + strandat 1277.938 kb on + strandat 1277.945 kb on - strandat 1277.945 kb on - strandat 1277.954 kb on - strandat 1277.954 kb on - strandat 1277.958 kb on + strandat 1277.958 kb on + strandat 1277.959 kb on - strandat 1277.959 kb on - strandat 1277.978 kb on + strandat 1278.265 kb on + strand, within CA264_05495at 1278.267 kb on + strand, within CA264_05495at 1278.268 kb on - strand, within CA264_05495at 1278.286 kb on + strand, within CA264_05495at 1278.287 kb on - strand, within CA264_05495at 1278.287 kb on - strand, within CA264_05495at 1278.367 kb on + strand, within CA264_05495at 1278.385 kb on + strand, within CA264_05495at 1278.421 kb on + strand, within CA264_05495at 1278.421 kb on + strand, within CA264_05495at 1278.422 kb on - strand, within CA264_05495at 1278.422 kb on - strand, within CA264_05495at 1278.425 kb on + strand, within CA264_05495at 1278.472 kb on + strand, within CA264_05495at 1278.472 kb on + strand, within CA264_05495at 1278.472 kb on + strand, within CA264_05495at 1278.473 kb on - strand, within CA264_05495at 1278.473 kb on - strand, within CA264_05495at 1278.477 kb on - strand, within CA264_05495at 1278.477 kb on - strand, within CA264_05495at 1278.477 kb on - strand, within CA264_05495at 1278.550 kb on + strand, within CA264_05495at 1278.551 kb on - strand, within CA264_05495at 1278.551 kb on - strand, within CA264_05495at 1278.551 kb on - strand, within CA264_05495at 1278.551 kb on - strand, within CA264_05495at 1278.551 kb on - strand, within CA264_05495at 1278.554 kb on + strand, within CA264_05495at 1278.632 kb on - strandat 1278.642 kb on + strandat 1278.642 kb on + strandat 1278.643 kb on - strandat 1278.669 kb on + strandat 1278.700 kb on + strandat 1278.701 kb on - strandat 1278.705 kb on + strandat 1278.705 kb on + strandat 1278.706 kb on - strandat 1278.712 kb on - strandat 1278.731 kb on + strandat 1278.749 kb on + strandat 1278.767 kb on - strand, within CA264_05500at 1278.915 kb on + strand, within CA264_05500at 1278.971 kb on + strand, within CA264_05500at 1279.061 kb on - strand, within CA264_05500at 1279.117 kb on + strandat 1279.123 kb on - strandat 1279.123 kb on - strandat 1279.168 kb on + strandat 1279.222 kb on - strandat 1279.227 kb on + strandat 1279.227 kb on + strandat 1279.284 kb on + strandat 1279.297 kb on - strandat 1279.313 kb on - strandat 1279.450 kb on + strand, within CA264_05505at 1279.462 kb on - strand, within CA264_05505at 1279.466 kb on + strand, within CA264_05505at 1279.466 kb on + strand, within CA264_05505at 1279.471 kb on + strand, within CA264_05505at 1279.471 kb on + strand, within CA264_05505at 1279.550 kb on + strand, within CA264_05505at 1279.551 kb on - strand, within CA264_05505at 1279.551 kb on - strand, within CA264_05505at 1279.551 kb on - strand, within CA264_05505at 1279.581 kb on + strand, within CA264_05505at 1279.581 kb on + strand, within CA264_05505at 1279.582 kb on - strand, within CA264_05505at 1279.584 kb on - strand, within CA264_05505

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.035 mg/ml
remove
1,276,998 - +0.3
1,277,014 + +0.4
1,277,081 + +0.6
1,277,121 + CA264_05490 0.12 -1.3
1,277,161 - CA264_05490 0.17 +0.9
1,277,161 - CA264_05490 0.17 +1.2
1,277,161 - CA264_05490 0.17 +1.0
1,277,255 - CA264_05490 0.28 -2.9
1,277,321 + CA264_05490 0.35 -0.4
1,277,322 - CA264_05490 0.35 -1.1
1,277,328 + CA264_05490 0.36 +0.9
1,277,377 + CA264_05490 0.42 -0.4
1,277,377 + CA264_05490 0.42 -1.3
1,277,378 - CA264_05490 0.42 -0.6
1,277,464 + CA264_05490 0.52 +0.3
1,277,465 - CA264_05490 0.52 +1.4
1,277,527 + CA264_05490 0.59 -0.2
1,277,557 - CA264_05490 0.62 -0.9
1,277,573 - CA264_05490 0.64 +0.6
1,277,781 + CA264_05490 0.88 +0.5
1,277,781 + CA264_05490 0.88 -0.7
1,277,787 + CA264_05490 0.89 +0.2
1,277,788 - CA264_05490 0.89 -1.0
1,277,844 + +0.4
1,277,856 - -0.3
1,277,857 + +1.0
1,277,858 - +2.3
1,277,870 + +0.2
1,277,890 + +0.1
1,277,935 + -0.8
1,277,936 - +0.1
1,277,936 - +5.7
1,277,938 + -1.8
1,277,938 + -0.4
1,277,945 - -0.5
1,277,945 - +1.0
1,277,954 - -1.2
1,277,954 - +2.1
1,277,958 + +1.0
1,277,958 + +0.4
1,277,959 - +0.8
1,277,959 - -0.4
1,277,978 + -0.3
1,278,265 + CA264_05495 0.45 +1.2
1,278,267 + CA264_05495 0.46 -0.6
1,278,268 - CA264_05495 0.46 -2.0
1,278,286 + CA264_05495 0.48 +0.1
1,278,287 - CA264_05495 0.49 +1.4
1,278,287 - CA264_05495 0.49 -0.8
1,278,367 + CA264_05495 0.60 -0.6
1,278,385 + CA264_05495 0.63 -0.4
1,278,421 + CA264_05495 0.68 -0.2
1,278,421 + CA264_05495 0.68 +1.2
1,278,422 - CA264_05495 0.69 +2.3
1,278,422 - CA264_05495 0.69 -0.7
1,278,425 + CA264_05495 0.69 -1.7
1,278,472 + CA264_05495 0.76 +1.4
1,278,472 + CA264_05495 0.76 -0.1
1,278,472 + CA264_05495 0.76 -0.9
1,278,473 - CA264_05495 0.76 -0.8
1,278,473 - CA264_05495 0.76 +0.3
1,278,477 - CA264_05495 0.77 -0.9
1,278,477 - CA264_05495 0.77 -0.8
1,278,477 - CA264_05495 0.77 -1.2
1,278,550 + CA264_05495 0.88 -0.8
1,278,551 - CA264_05495 0.88 -1.6
1,278,551 - CA264_05495 0.88 +3.2
1,278,551 - CA264_05495 0.88 +0.0
1,278,551 - CA264_05495 0.88 +1.0
1,278,551 - CA264_05495 0.88 +0.9
1,278,554 + CA264_05495 0.88 -1.0
1,278,632 - -1.0
1,278,642 + -1.0
1,278,642 + -0.4
1,278,643 - +0.8
1,278,669 + +0.6
1,278,700 + -0.5
1,278,701 - +0.0
1,278,705 + +1.0
1,278,705 + +1.1
1,278,706 - +1.4
1,278,712 - +0.0
1,278,731 + -0.5
1,278,749 + -0.2
1,278,767 - CA264_05500 0.14 +0.3
1,278,915 + CA264_05500 0.51 -1.5
1,278,971 + CA264_05500 0.65 +2.0
1,279,061 - CA264_05500 0.87 +0.9
1,279,117 + -0.7
1,279,123 - -0.6
1,279,123 - -1.5
1,279,168 + +0.7
1,279,222 - +0.4
1,279,227 + +1.1
1,279,227 + +0.3
1,279,284 + -0.5
1,279,297 - -1.0
1,279,313 - -0.4
1,279,450 + CA264_05505 0.39 -0.2
1,279,462 - CA264_05505 0.42 +0.1
1,279,466 + CA264_05505 0.43 -0.4
1,279,466 + CA264_05505 0.43 +0.1
1,279,471 + CA264_05505 0.44 -0.7
1,279,471 + CA264_05505 0.44 +1.0
1,279,550 + CA264_05505 0.63 +1.0
1,279,551 - CA264_05505 0.63 -0.9
1,279,551 - CA264_05505 0.63 +1.2
1,279,551 - CA264_05505 0.63 -2.4
1,279,581 + CA264_05505 0.70 -0.2
1,279,581 + CA264_05505 0.70 -0.5
1,279,582 - CA264_05505 0.70 -0.4
1,279,584 - CA264_05505 0.71 -0.7

Or see this region's nucleotide sequence