Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_05025

Experiment: m.b. Cisplatin 0.035 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_05010 and CA264_05015 overlap by 2 nucleotidesCA264_05015 and CA264_05020 are separated by 3 nucleotidesCA264_05020 and CA264_05025 are separated by 124 nucleotidesCA264_05025 and CA264_05030 are separated by 6 nucleotides CA264_05010: CA264_05010 - hypothetical protein, at 1,163,866 to 1,164,732 _05010 CA264_05015: CA264_05015 - hypothetical protein, at 1,164,731 to 1,164,955 _05015 CA264_05020: CA264_05020 - hypothetical protein, at 1,164,959 to 1,165,408 _05020 CA264_05025: CA264_05025 - ATP phosphoribosyltransferase, at 1,165,533 to 1,166,384 _05025 CA264_05030: CA264_05030 - histidinol dehydrogenase, at 1,166,391 to 1,167,680 _05030 Position (kb) 1165 1166 1167Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1164.587 kb on + strand, within CA264_05010at 1164.597 kb on + strand, within CA264_05010at 1164.764 kb on - strandat 1164.764 kb on - strand, within CA264_05015at 1164.764 kb on - strand, within CA264_05015at 1164.764 kb on - strand, within CA264_05015at 1164.771 kb on + strand, within CA264_05015at 1164.771 kb on + strand, within CA264_05015at 1164.772 kb on - strand, within CA264_05015at 1165.073 kb on + strand, within CA264_05020at 1165.075 kb on + strand, within CA264_05020at 1165.076 kb on - strand, within CA264_05020at 1165.076 kb on - strand, within CA264_05020at 1165.076 kb on - strand, within CA264_05020at 1165.078 kb on + strand, within CA264_05020at 1165.165 kb on + strand, within CA264_05020at 1165.184 kb on - strand, within CA264_05020at 1165.231 kb on + strand, within CA264_05020at 1165.231 kb on + strand, within CA264_05020at 1165.250 kb on + strand, within CA264_05020at 1165.252 kb on + strand, within CA264_05020at 1165.262 kb on + strand, within CA264_05020at 1165.263 kb on - strand, within CA264_05020at 1165.268 kb on + strand, within CA264_05020at 1165.269 kb on - strand, within CA264_05020at 1165.269 kb on - strand, within CA264_05020at 1165.282 kb on + strand, within CA264_05020at 1165.308 kb on + strand, within CA264_05020at 1165.317 kb on - strand, within CA264_05020at 1165.337 kb on + strand, within CA264_05020at 1165.338 kb on - strand, within CA264_05020at 1165.399 kb on + strandat 1165.416 kb on - strandat 1165.424 kb on + strandat 1165.425 kb on - strandat 1165.431 kb on - strandat 1165.431 kb on - strandat 1165.435 kb on + strandat 1165.435 kb on + strandat 1165.435 kb on + strandat 1165.497 kb on - strandat 1165.499 kb on + strandat 1165.511 kb on + strandat 1165.516 kb on + strandat 1165.516 kb on + strandat 1165.525 kb on + strandat 1165.529 kb on + strandat 1165.529 kb on + strandat 1165.529 kb on + strandat 1165.529 kb on + strandat 1165.538 kb on - strandat 1165.543 kb on + strandat 1165.543 kb on + strandat 1165.544 kb on - strandat 1165.544 kb on - strandat 1165.604 kb on + strandat 1165.616 kb on - strandat 1165.616 kb on - strandat 1165.633 kb on + strand, within CA264_05025at 1165.836 kb on + strand, within CA264_05025at 1165.931 kb on + strand, within CA264_05025at 1165.938 kb on - strand, within CA264_05025at 1166.114 kb on - strand, within CA264_05025at 1166.170 kb on - strand, within CA264_05025at 1166.195 kb on + strand, within CA264_05025at 1166.230 kb on + strand, within CA264_05025at 1166.231 kb on - strand, within CA264_05025at 1166.231 kb on - strand, within CA264_05025at 1166.287 kb on + strand, within CA264_05025at 1166.350 kb on + strandat 1166.382 kb on + strandat 1166.396 kb on + strandat 1166.404 kb on + strandat 1166.405 kb on - strandat 1166.492 kb on + strandat 1166.492 kb on + strandat 1166.493 kb on - strandat 1166.575 kb on + strand, within CA264_05030at 1166.638 kb on + strand, within CA264_05030at 1166.639 kb on - strand, within CA264_05030at 1166.639 kb on - strand, within CA264_05030at 1166.639 kb on - strand, within CA264_05030at 1166.647 kb on - strand, within CA264_05030at 1166.647 kb on - strand, within CA264_05030at 1166.656 kb on + strand, within CA264_05030at 1166.656 kb on + strand, within CA264_05030at 1166.657 kb on - strand, within CA264_05030at 1166.698 kb on + strand, within CA264_05030at 1166.760 kb on + strand, within CA264_05030at 1166.853 kb on - strand, within CA264_05030at 1166.879 kb on - strand, within CA264_05030at 1166.888 kb on + strand, within CA264_05030at 1166.888 kb on + strand, within CA264_05030at 1166.889 kb on - strand, within CA264_05030at 1166.891 kb on - strand, within CA264_05030at 1166.891 kb on - strand, within CA264_05030at 1166.895 kb on + strand, within CA264_05030at 1166.895 kb on + strand, within CA264_05030at 1166.896 kb on - strand, within CA264_05030at 1166.896 kb on - strand, within CA264_05030at 1167.002 kb on - strand, within CA264_05030at 1167.021 kb on + strand, within CA264_05030at 1167.025 kb on + strand, within CA264_05030at 1167.025 kb on + strand, within CA264_05030at 1167.133 kb on + strand, within CA264_05030at 1167.133 kb on + strand, within CA264_05030at 1167.145 kb on + strand, within CA264_05030at 1167.190 kb on + strand, within CA264_05030at 1167.287 kb on + strand, within CA264_05030at 1167.299 kb on + strand, within CA264_05030at 1167.300 kb on - strand, within CA264_05030at 1167.338 kb on + strand, within CA264_05030

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.035 mg/ml
remove
1,164,587 + CA264_05010 0.83 -1.7
1,164,597 + CA264_05010 0.84 +0.3
1,164,764 - +1.6
1,164,764 - CA264_05015 0.15 -2.4
1,164,764 - CA264_05015 0.15 -1.8
1,164,764 - CA264_05015 0.15 -0.1
1,164,771 + CA264_05015 0.18 +0.2
1,164,771 + CA264_05015 0.18 -0.2
1,164,772 - CA264_05015 0.18 +0.9
1,165,073 + CA264_05020 0.25 +1.6
1,165,075 + CA264_05020 0.26 +0.1
1,165,076 - CA264_05020 0.26 -0.7
1,165,076 - CA264_05020 0.26 -1.0
1,165,076 - CA264_05020 0.26 -1.8
1,165,078 + CA264_05020 0.26 +1.4
1,165,165 + CA264_05020 0.46 +1.0
1,165,184 - CA264_05020 0.50 +0.7
1,165,231 + CA264_05020 0.60 -0.0
1,165,231 + CA264_05020 0.60 -1.0
1,165,250 + CA264_05020 0.65 +0.1
1,165,252 + CA264_05020 0.65 -0.2
1,165,262 + CA264_05020 0.67 +1.1
1,165,263 - CA264_05020 0.68 -0.1
1,165,268 + CA264_05020 0.69 -0.1
1,165,269 - CA264_05020 0.69 -0.5
1,165,269 - CA264_05020 0.69 -1.3
1,165,282 + CA264_05020 0.72 +1.9
1,165,308 + CA264_05020 0.78 -1.0
1,165,317 - CA264_05020 0.80 -0.4
1,165,337 + CA264_05020 0.84 +3.2
1,165,338 - CA264_05020 0.84 -0.9
1,165,399 + +0.1
1,165,416 - +0.3
1,165,424 + +0.3
1,165,425 - -2.1
1,165,431 - +0.3
1,165,431 - -0.1
1,165,435 + +0.9
1,165,435 + +1.4
1,165,435 + -0.7
1,165,497 - +0.3
1,165,499 + -0.7
1,165,511 + -1.3
1,165,516 + -0.6
1,165,516 + -1.0
1,165,525 + +0.5
1,165,529 + -0.4
1,165,529 + +1.9
1,165,529 + -1.7
1,165,529 + -1.3
1,165,538 - -1.1
1,165,543 + -1.7
1,165,543 + -1.3
1,165,544 - -2.7
1,165,544 - -0.7
1,165,604 + +0.8
1,165,616 - +0.3
1,165,616 - -1.3
1,165,633 + CA264_05025 0.12 +1.3
1,165,836 + CA264_05025 0.36 +2.0
1,165,931 + CA264_05025 0.47 -0.0
1,165,938 - CA264_05025 0.48 +0.3
1,166,114 - CA264_05025 0.68 +0.9
1,166,170 - CA264_05025 0.75 +0.4
1,166,195 + CA264_05025 0.78 +0.6
1,166,230 + CA264_05025 0.82 -1.1
1,166,231 - CA264_05025 0.82 +0.1
1,166,231 - CA264_05025 0.82 -0.3
1,166,287 + CA264_05025 0.88 +2.4
1,166,350 + +1.0
1,166,382 + -1.8
1,166,396 + +1.2
1,166,404 + -1.3
1,166,405 - +1.2
1,166,492 + -2.2
1,166,492 + -0.6
1,166,493 - -0.8
1,166,575 + CA264_05030 0.14 -0.3
1,166,638 + CA264_05030 0.19 -0.9
1,166,639 - CA264_05030 0.19 -1.0
1,166,639 - CA264_05030 0.19 +0.1
1,166,639 - CA264_05030 0.19 -1.4
1,166,647 - CA264_05030 0.20 -1.5
1,166,647 - CA264_05030 0.20 +0.9
1,166,656 + CA264_05030 0.21 +0.1
1,166,656 + CA264_05030 0.21 +1.0
1,166,657 - CA264_05030 0.21 -0.3
1,166,698 + CA264_05030 0.24 +0.0
1,166,760 + CA264_05030 0.29 -0.9
1,166,853 - CA264_05030 0.36 -0.7
1,166,879 - CA264_05030 0.38 +0.2
1,166,888 + CA264_05030 0.39 +0.9
1,166,888 + CA264_05030 0.39 -1.2
1,166,889 - CA264_05030 0.39 +0.5
1,166,891 - CA264_05030 0.39 +0.2
1,166,891 - CA264_05030 0.39 -2.2
1,166,895 + CA264_05030 0.39 -0.4
1,166,895 + CA264_05030 0.39 -0.7
1,166,896 - CA264_05030 0.39 -1.8
1,166,896 - CA264_05030 0.39 -1.5
1,167,002 - CA264_05030 0.47 -0.6
1,167,021 + CA264_05030 0.49 +0.3
1,167,025 + CA264_05030 0.49 +0.2
1,167,025 + CA264_05030 0.49 +0.2
1,167,133 + CA264_05030 0.58 +0.4
1,167,133 + CA264_05030 0.58 +0.6
1,167,145 + CA264_05030 0.58 +1.4
1,167,190 + CA264_05030 0.62 -0.9
1,167,287 + CA264_05030 0.69 +0.6
1,167,299 + CA264_05030 0.70 +0.6
1,167,300 - CA264_05030 0.70 -1.4
1,167,338 + CA264_05030 0.73 -0.0

Or see this region's nucleotide sequence