Experiment: m.b. Cisplatin 0.035 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_04980 and CA264_04985 overlap by 1 nucleotides CA264_04985 and CA264_04990 are separated by 3 nucleotides
CA264_04980: CA264_04980 - tRNA(5-methylaminomethyl-2-thiouridine)- methyltransferase, at 1,156,302 to 1,157,429
_04980
CA264_04985: CA264_04985 - hypothetical protein, at 1,157,429 to 1,158,184
_04985
CA264_04990: CA264_04990 - T9SS C-terminal target domain-containing protein, at 1,158,188 to 1,159,852
_04990
Position (kb)
1157
1158
1159 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1157.396 kb on + strand at 1157.406 kb on + strand at 1157.531 kb on + strand, within CA264_04985 at 1157.562 kb on - strand, within CA264_04985 at 1157.568 kb on + strand, within CA264_04985 at 1157.583 kb on - strand, within CA264_04985 at 1157.669 kb on + strand, within CA264_04985 at 1157.730 kb on - strand, within CA264_04985 at 1157.862 kb on - strand, within CA264_04985 at 1157.895 kb on - strand, within CA264_04985 at 1157.913 kb on - strand, within CA264_04985 at 1157.913 kb on - strand, within CA264_04985 at 1157.913 kb on - strand, within CA264_04985 at 1157.914 kb on + strand, within CA264_04985 at 1157.914 kb on + strand, within CA264_04985 at 1157.914 kb on + strand, within CA264_04985 at 1157.915 kb on - strand, within CA264_04985 at 1157.915 kb on - strand, within CA264_04985 at 1157.915 kb on - strand, within CA264_04985 at 1157.918 kb on + strand, within CA264_04985 at 1157.919 kb on - strand, within CA264_04985 at 1158.035 kb on + strand, within CA264_04985 at 1158.036 kb on - strand, within CA264_04985 at 1158.059 kb on + strand, within CA264_04985 at 1158.059 kb on + strand, within CA264_04985 at 1158.068 kb on + strand, within CA264_04985 at 1158.069 kb on - strand, within CA264_04985 at 1158.083 kb on + strand, within CA264_04985 at 1158.116 kb on + strand at 1158.121 kb on + strand at 1158.182 kb on + strand at 1158.187 kb on + strand at 1158.187 kb on + strand at 1158.188 kb on - strand at 1158.207 kb on - strand at 1158.207 kb on - strand at 1158.256 kb on + strand at 1158.257 kb on - strand at 1158.264 kb on + strand at 1158.282 kb on + strand at 1158.286 kb on - strand at 1158.287 kb on + strand at 1158.288 kb on - strand at 1158.314 kb on + strand at 1158.314 kb on + strand at 1158.314 kb on + strand at 1158.420 kb on - strand, within CA264_04990 at 1158.433 kb on - strand, within CA264_04990 at 1158.433 kb on - strand, within CA264_04990 at 1158.433 kb on - strand, within CA264_04990 at 1158.453 kb on + strand, within CA264_04990 at 1158.453 kb on + strand, within CA264_04990 at 1158.454 kb on - strand, within CA264_04990 at 1158.454 kb on - strand, within CA264_04990 at 1158.454 kb on - strand, within CA264_04990 at 1158.459 kb on - strand, within CA264_04990 at 1158.533 kb on + strand, within CA264_04990 at 1158.534 kb on - strand, within CA264_04990 at 1158.534 kb on - strand, within CA264_04990 at 1158.562 kb on + strand at 1158.577 kb on + strand, within CA264_04990 at 1158.604 kb on + strand, within CA264_04990 at 1158.604 kb on + strand, within CA264_04990 at 1158.723 kb on - strand, within CA264_04990 at 1158.896 kb on - strand, within CA264_04990 at 1158.896 kb on - strand, within CA264_04990 at 1158.896 kb on - strand, within CA264_04990 at 1158.988 kb on + strand, within CA264_04990 at 1158.988 kb on + strand, within CA264_04990 at 1158.989 kb on - strand, within CA264_04990 at 1158.989 kb on - strand, within CA264_04990 at 1158.989 kb on - strand, within CA264_04990 at 1159.026 kb on - strand, within CA264_04990 at 1159.071 kb on - strand, within CA264_04990 at 1159.100 kb on + strand, within CA264_04990 at 1159.100 kb on + strand, within CA264_04990 at 1159.101 kb on - strand, within CA264_04990 at 1159.102 kb on + strand, within CA264_04990 at 1159.103 kb on - strand, within CA264_04990 at 1159.103 kb on - strand, within CA264_04990 at 1159.103 kb on - strand, within CA264_04990 at 1159.103 kb on - strand, within CA264_04990 at 1159.103 kb on - strand, within CA264_04990 at 1159.106 kb on + strand, within CA264_04990
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.035 mg/ml remove 1,157,396 + -1.1 1,157,406 + -1.1 1,157,531 + CA264_04985 0.13 -1.1 1,157,562 - CA264_04985 0.18 +1.2 1,157,568 + CA264_04985 0.18 +0.7 1,157,583 - CA264_04985 0.20 +1.1 1,157,669 + CA264_04985 0.32 -0.1 1,157,730 - CA264_04985 0.40 +1.7 1,157,862 - CA264_04985 0.57 -2.0 1,157,895 - CA264_04985 0.62 -0.4 1,157,913 - CA264_04985 0.64 -0.6 1,157,913 - CA264_04985 0.64 -2.8 1,157,913 - CA264_04985 0.64 -0.7 1,157,914 + CA264_04985 0.64 -1.3 1,157,914 + CA264_04985 0.64 -0.6 1,157,914 + CA264_04985 0.64 -0.1 1,157,915 - CA264_04985 0.64 -1.0 1,157,915 - CA264_04985 0.64 -0.3 1,157,915 - CA264_04985 0.64 +0.5 1,157,918 + CA264_04985 0.65 -0.7 1,157,919 - CA264_04985 0.65 +2.2 1,158,035 + CA264_04985 0.80 -0.2 1,158,036 - CA264_04985 0.80 +1.0 1,158,059 + CA264_04985 0.83 -0.7 1,158,059 + CA264_04985 0.83 -1.8 1,158,068 + CA264_04985 0.85 -0.2 1,158,069 - CA264_04985 0.85 +1.4 1,158,083 + CA264_04985 0.87 +1.2 1,158,116 + -0.9 1,158,121 + -0.9 1,158,182 + +1.2 1,158,187 + -0.4 1,158,187 + -0.2 1,158,188 - -0.0 1,158,207 - -0.0 1,158,207 - +1.0 1,158,256 + -0.0 1,158,257 - -0.1 1,158,264 + +0.3 1,158,282 + -0.0 1,158,286 - +2.7 1,158,287 + -1.9 1,158,288 - -1.6 1,158,314 + +1.4 1,158,314 + +1.4 1,158,314 + +2.0 1,158,420 - CA264_04990 0.14 -1.6 1,158,433 - CA264_04990 0.15 -1.1 1,158,433 - CA264_04990 0.15 +0.3 1,158,433 - CA264_04990 0.15 +0.6 1,158,453 + CA264_04990 0.16 +0.0 1,158,453 + CA264_04990 0.16 -1.1 1,158,454 - CA264_04990 0.16 -0.0 1,158,454 - CA264_04990 0.16 +0.3 1,158,454 - CA264_04990 0.16 -0.1 1,158,459 - CA264_04990 0.16 -0.9 1,158,533 + CA264_04990 0.21 -1.5 1,158,534 - CA264_04990 0.21 -3.1 1,158,534 - CA264_04990 0.21 +0.8 1,158,562 + +3.2 1,158,577 + CA264_04990 0.23 -0.1 1,158,604 + CA264_04990 0.25 -0.4 1,158,604 + CA264_04990 0.25 -1.5 1,158,723 - CA264_04990 0.32 +2.2 1,158,896 - CA264_04990 0.43 +1.4 1,158,896 - CA264_04990 0.43 -1.7 1,158,896 - CA264_04990 0.43 +0.6 1,158,988 + CA264_04990 0.48 +0.5 1,158,988 + CA264_04990 0.48 +0.8 1,158,989 - CA264_04990 0.48 -1.4 1,158,989 - CA264_04990 0.48 -0.5 1,158,989 - CA264_04990 0.48 -0.7 1,159,026 - CA264_04990 0.50 +0.8 1,159,071 - CA264_04990 0.53 +0.8 1,159,100 + CA264_04990 0.55 -1.9 1,159,100 + CA264_04990 0.55 -1.7 1,159,101 - CA264_04990 0.55 -0.9 1,159,102 + CA264_04990 0.55 +1.0 1,159,103 - CA264_04990 0.55 +2.6 1,159,103 - CA264_04990 0.55 -0.9 1,159,103 - CA264_04990 0.55 +0.9 1,159,103 - CA264_04990 0.55 -1.0 1,159,103 - CA264_04990 0.55 +0.5 1,159,106 + CA264_04990 0.55 +0.3
Or see this region's nucleotide sequence