Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_04325

Experiment: m.b. Cisplatin 0.035 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_04320 and CA264_04325 are separated by 98 nucleotidesCA264_04325 and CA264_04330 are separated by 12 nucleotidesCA264_04330 and CA264_04335 are separated by 91 nucleotides CA264_04320: CA264_04320 - MFS transporter, at 998,959 to 1,000,287 _04320 CA264_04325: CA264_04325 - amidohydrolase, at 1,000,386 to 1,002,047 _04325 CA264_04330: CA264_04330 - AMP nucleosidase, at 1,002,060 to 1,002,833 _04330 CA264_04335: CA264_04335 - restriction endonuclease subunit R, at 1,002,925 to 1,003,371 _04335 Position (kb) 1000 1001 1002 1003Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 999.404 kb on - strand, within CA264_04320at 999.440 kb on - strand, within CA264_04320at 999.454 kb on - strand, within CA264_04320at 999.519 kb on + strand, within CA264_04320at 999.592 kb on + strand, within CA264_04320at 999.613 kb on + strand, within CA264_04320at 999.622 kb on - strand, within CA264_04320at 999.664 kb on - strand, within CA264_04320at 999.664 kb on - strand, within CA264_04320at 999.683 kb on + strand, within CA264_04320at 999.758 kb on - strand, within CA264_04320at 999.758 kb on - strand, within CA264_04320at 999.770 kb on + strand, within CA264_04320at 999.856 kb on + strand, within CA264_04320at 999.883 kb on + strand, within CA264_04320at 999.893 kb on + strand, within CA264_04320at 999.893 kb on + strand, within CA264_04320at 999.904 kb on - strand, within CA264_04320at 999.946 kb on + strand, within CA264_04320at 1000.014 kb on - strand, within CA264_04320at 1000.014 kb on - strand, within CA264_04320at 1000.036 kb on + strand, within CA264_04320at 1000.037 kb on - strand, within CA264_04320at 1000.056 kb on + strand, within CA264_04320at 1000.078 kb on + strand, within CA264_04320at 1000.079 kb on - strand, within CA264_04320at 1000.084 kb on - strand, within CA264_04320at 1000.084 kb on - strand, within CA264_04320at 1000.090 kb on + strand, within CA264_04320at 1000.090 kb on + strand, within CA264_04320at 1000.091 kb on - strand, within CA264_04320at 1000.091 kb on - strand, within CA264_04320at 1000.091 kb on - strand, within CA264_04320at 1000.135 kb on + strand, within CA264_04320at 1000.136 kb on - strand, within CA264_04320at 1000.156 kb on - strandat 1000.276 kb on - strandat 1000.296 kb on + strandat 1000.297 kb on - strandat 1000.297 kb on - strandat 1000.306 kb on - strandat 1000.306 kb on - strandat 1000.413 kb on + strandat 1000.459 kb on - strandat 1000.464 kb on + strandat 1000.486 kb on - strandat 1000.487 kb on + strandat 1000.514 kb on + strandat 1000.715 kb on - strand, within CA264_04325at 1000.792 kb on + strand, within CA264_04325at 1000.793 kb on - strand, within CA264_04325at 1000.796 kb on + strand, within CA264_04325at 1000.797 kb on - strand, within CA264_04325at 1000.841 kb on - strand, within CA264_04325at 1000.937 kb on + strand, within CA264_04325at 1000.938 kb on - strand, within CA264_04325at 1001.125 kb on + strand, within CA264_04325at 1001.125 kb on + strand, within CA264_04325at 1001.182 kb on + strand, within CA264_04325at 1001.271 kb on + strand, within CA264_04325at 1001.276 kb on + strand, within CA264_04325at 1001.283 kb on - strand, within CA264_04325at 1001.309 kb on + strand, within CA264_04325at 1001.310 kb on - strand, within CA264_04325at 1001.310 kb on - strand, within CA264_04325at 1001.547 kb on + strand, within CA264_04325at 1001.548 kb on - strand, within CA264_04325at 1001.548 kb on - strand, within CA264_04325at 1001.548 kb on - strand, within CA264_04325at 1001.548 kb on - strand, within CA264_04325at 1001.652 kb on - strand, within CA264_04325at 1001.691 kb on + strand, within CA264_04325at 1001.692 kb on - strand, within CA264_04325at 1001.753 kb on - strand, within CA264_04325at 1001.826 kb on - strand, within CA264_04325at 1001.827 kb on + strand, within CA264_04325at 1001.827 kb on + strand, within CA264_04325at 1001.827 kb on + strand, within CA264_04325at 1001.866 kb on - strand, within CA264_04325at 1001.910 kb on - strandat 1001.938 kb on + strandat 1002.033 kb on - strandat 1002.148 kb on + strand, within CA264_04330at 1002.365 kb on - strand, within CA264_04330at 1002.699 kb on + strand, within CA264_04330at 1002.731 kb on - strand, within CA264_04330at 1002.843 kb on - strandat 1002.998 kb on + strand, within CA264_04335

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.035 mg/ml
remove
999,404 - CA264_04320 0.33 +1.0
999,440 - CA264_04320 0.36 +2.8
999,454 - CA264_04320 0.37 +2.2
999,519 + CA264_04320 0.42 -0.8
999,592 + CA264_04320 0.48 -0.5
999,613 + CA264_04320 0.49 -0.7
999,622 - CA264_04320 0.50 +0.5
999,664 - CA264_04320 0.53 +0.1
999,664 - CA264_04320 0.53 -0.2
999,683 + CA264_04320 0.54 +0.2
999,758 - CA264_04320 0.60 -1.4
999,758 - CA264_04320 0.60 +0.6
999,770 + CA264_04320 0.61 +0.5
999,856 + CA264_04320 0.67 +0.4
999,883 + CA264_04320 0.70 +0.1
999,893 + CA264_04320 0.70 -1.6
999,893 + CA264_04320 0.70 +0.1
999,904 - CA264_04320 0.71 -1.2
999,946 + CA264_04320 0.74 +0.0
1,000,014 - CA264_04320 0.79 +3.2
1,000,014 - CA264_04320 0.79 +0.1
1,000,036 + CA264_04320 0.81 -0.7
1,000,037 - CA264_04320 0.81 -2.2
1,000,056 + CA264_04320 0.83 +1.2
1,000,078 + CA264_04320 0.84 +1.0
1,000,079 - CA264_04320 0.84 -2.1
1,000,084 - CA264_04320 0.85 -0.3
1,000,084 - CA264_04320 0.85 +1.4
1,000,090 + CA264_04320 0.85 +0.9
1,000,090 + CA264_04320 0.85 +0.1
1,000,091 - CA264_04320 0.85 +1.6
1,000,091 - CA264_04320 0.85 +0.7
1,000,091 - CA264_04320 0.85 -0.1
1,000,135 + CA264_04320 0.88 +0.5
1,000,136 - CA264_04320 0.89 +0.2
1,000,156 - -2.2
1,000,276 - +1.3
1,000,296 + -2.4
1,000,297 - -0.2
1,000,297 - +1.0
1,000,306 - +1.6
1,000,306 - +1.7
1,000,413 + +0.5
1,000,459 - -0.9
1,000,464 + -0.0
1,000,486 - -0.9
1,000,487 + -1.7
1,000,514 + -1.6
1,000,715 - CA264_04325 0.20 +1.9
1,000,792 + CA264_04325 0.24 -0.2
1,000,793 - CA264_04325 0.24 -0.5
1,000,796 + CA264_04325 0.25 -1.1
1,000,797 - CA264_04325 0.25 -0.1
1,000,841 - CA264_04325 0.27 +0.2
1,000,937 + CA264_04325 0.33 -3.3
1,000,938 - CA264_04325 0.33 -0.2
1,001,125 + CA264_04325 0.44 -0.9
1,001,125 + CA264_04325 0.44 -0.7
1,001,182 + CA264_04325 0.48 +0.9
1,001,271 + CA264_04325 0.53 -0.4
1,001,276 + CA264_04325 0.54 -2.0
1,001,283 - CA264_04325 0.54 -3.0
1,001,309 + CA264_04325 0.56 -0.1
1,001,310 - CA264_04325 0.56 +0.6
1,001,310 - CA264_04325 0.56 +1.4
1,001,547 + CA264_04325 0.70 -1.0
1,001,548 - CA264_04325 0.70 +0.1
1,001,548 - CA264_04325 0.70 -1.7
1,001,548 - CA264_04325 0.70 -0.6
1,001,548 - CA264_04325 0.70 +0.3
1,001,652 - CA264_04325 0.76 -0.0
1,001,691 + CA264_04325 0.79 -0.1
1,001,692 - CA264_04325 0.79 +0.3
1,001,753 - CA264_04325 0.82 -1.0
1,001,826 - CA264_04325 0.87 -0.7
1,001,827 + CA264_04325 0.87 -1.3
1,001,827 + CA264_04325 0.87 -0.5
1,001,827 + CA264_04325 0.87 +2.2
1,001,866 - CA264_04325 0.89 -1.2
1,001,910 - +1.2
1,001,938 + -0.1
1,002,033 - -0.9
1,002,148 + CA264_04330 0.11 -1.4
1,002,365 - CA264_04330 0.39 -1.0
1,002,699 + CA264_04330 0.83 +0.2
1,002,731 - CA264_04330 0.87 -1.7
1,002,843 - -1.2
1,002,998 + CA264_04335 0.16 +0.6

Or see this region's nucleotide sequence