Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_03675

Experiment: m.b. Cisplatin 0.035 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_03665 and CA264_03670 are separated by 95 nucleotidesCA264_03670 and CA264_03675 are separated by 346 nucleotidesCA264_03675 and CA264_03680 are separated by 108 nucleotidesCA264_03680 and CA264_03685 are separated by 108 nucleotides CA264_03665: CA264_03665 - FUSC family protein, at 856,405 to 857,457 _03665 CA264_03670: CA264_03670 - polyisoprenoid-binding protein, at 857,553 to 858,086 _03670 CA264_03675: CA264_03675 - hypothetical protein, at 858,433 to 859,383 _03675 CA264_03680: CA264_03680 - hypothetical protein, at 859,492 to 859,809 _03680 CA264_03685: CA264_03685 - CusA/CzcA family heavy metal efflux RND transporter, at 859,918 to 864,294 _03685 Position (kb) 858 859 860Strain fitness (log2 ratio) -2 -1 0 1 2 3at 857.455 kb on + strandat 857.456 kb on - strandat 857.481 kb on - strandat 857.536 kb on + strandat 857.538 kb on + strandat 857.538 kb on + strandat 857.566 kb on - strandat 857.746 kb on - strand, within CA264_03670at 857.796 kb on - strand, within CA264_03670at 857.840 kb on + strand, within CA264_03670at 857.840 kb on + strand, within CA264_03670at 857.926 kb on - strand, within CA264_03670at 857.980 kb on - strand, within CA264_03670at 858.063 kb on + strandat 858.063 kb on + strandat 858.064 kb on - strandat 858.086 kb on + strandat 858.086 kb on + strandat 858.086 kb on + strandat 858.090 kb on - strandat 858.090 kb on - strandat 858.115 kb on - strandat 858.158 kb on - strandat 858.158 kb on - strandat 858.190 kb on - strandat 858.229 kb on - strandat 858.250 kb on + strandat 858.278 kb on + strandat 858.472 kb on - strandat 858.499 kb on + strandat 858.499 kb on + strandat 858.499 kb on + strandat 858.499 kb on + strandat 858.502 kb on + strandat 858.504 kb on + strandat 858.505 kb on - strandat 858.505 kb on - strandat 858.550 kb on + strand, within CA264_03675at 858.551 kb on - strand, within CA264_03675at 858.551 kb on - strand, within CA264_03675at 858.551 kb on - strand, within CA264_03675at 858.553 kb on - strand, within CA264_03675at 858.566 kb on - strand, within CA264_03675at 858.740 kb on + strand, within CA264_03675at 858.740 kb on + strand, within CA264_03675at 858.741 kb on - strand, within CA264_03675at 858.741 kb on - strand, within CA264_03675at 858.779 kb on - strand, within CA264_03675at 858.779 kb on - strand, within CA264_03675at 858.877 kb on + strand, within CA264_03675at 858.900 kb on + strand, within CA264_03675at 859.132 kb on + strand, within CA264_03675at 859.255 kb on + strand, within CA264_03675at 859.255 kb on + strand, within CA264_03675at 859.272 kb on + strand, within CA264_03675at 859.293 kb on + strandat 859.294 kb on - strandat 859.294 kb on - strandat 859.382 kb on - strandat 859.456 kb on - strandat 859.462 kb on - strandat 859.467 kb on + strandat 859.468 kb on - strandat 859.584 kb on + strand, within CA264_03680at 859.662 kb on + strand, within CA264_03680at 859.663 kb on - strand, within CA264_03680at 859.663 kb on - strand, within CA264_03680at 859.743 kb on - strand, within CA264_03680at 859.743 kb on - strand, within CA264_03680at 859.751 kb on - strand, within CA264_03680at 859.751 kb on - strand, within CA264_03680at 859.826 kb on + strandat 859.900 kb on + strandat 859.901 kb on - strandat 859.926 kb on + strandat 859.927 kb on - strandat 859.965 kb on - strandat 860.003 kb on - strandat 860.109 kb on + strandat 860.110 kb on - strandat 860.110 kb on - strandat 860.143 kb on - strandat 860.219 kb on + strandat 860.227 kb on + strandat 860.227 kb on + strandat 860.228 kb on - strandat 860.338 kb on + strandat 860.339 kb on - strandat 860.352 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.035 mg/ml
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857,455 + -0.4
857,456 - -0.4
857,481 - -2.2
857,536 + -0.0
857,538 + -0.6
857,538 + +1.0
857,566 - -1.0
857,746 - CA264_03670 0.36 -0.6
857,796 - CA264_03670 0.46 +2.9
857,840 + CA264_03670 0.54 +1.0
857,840 + CA264_03670 0.54 +0.4
857,926 - CA264_03670 0.70 -0.1
857,980 - CA264_03670 0.80 +0.4
858,063 + -0.1
858,063 + -1.6
858,064 - -0.4
858,086 + -1.6
858,086 + -0.9
858,086 + +1.6
858,090 - -0.2
858,090 - +0.2
858,115 - -0.6
858,158 - -0.6
858,158 - +2.8
858,190 - -0.7
858,229 - -1.1
858,250 + +0.2
858,278 + +0.6
858,472 - +1.0
858,499 + -1.6
858,499 + -2.1
858,499 + -1.0
858,499 + -1.5
858,502 + -0.5
858,504 + +1.0
858,505 - +0.9
858,505 - -0.6
858,550 + CA264_03675 0.12 -0.1
858,551 - CA264_03675 0.12 -1.0
858,551 - CA264_03675 0.12 -0.1
858,551 - CA264_03675 0.12 -0.2
858,553 - CA264_03675 0.13 +2.6
858,566 - CA264_03675 0.14 +0.3
858,740 + CA264_03675 0.32 +1.0
858,740 + CA264_03675 0.32 -1.6
858,741 - CA264_03675 0.32 -0.8
858,741 - CA264_03675 0.32 -0.4
858,779 - CA264_03675 0.36 +0.3
858,779 - CA264_03675 0.36 +0.5
858,877 + CA264_03675 0.47 -0.2
858,900 + CA264_03675 0.49 -1.5
859,132 + CA264_03675 0.74 +0.5
859,255 + CA264_03675 0.86 -0.4
859,255 + CA264_03675 0.86 +0.6
859,272 + CA264_03675 0.88 -0.8
859,293 + -1.1
859,294 - +0.7
859,294 - +1.6
859,382 - +2.2
859,456 - +1.6
859,462 - -0.7
859,467 + -0.0
859,468 - -1.0
859,584 + CA264_03680 0.29 +0.3
859,662 + CA264_03680 0.53 +1.2
859,663 - CA264_03680 0.54 -0.9
859,663 - CA264_03680 0.54 -0.7
859,743 - CA264_03680 0.79 -0.9
859,743 - CA264_03680 0.79 -0.6
859,751 - CA264_03680 0.81 -0.2
859,751 - CA264_03680 0.81 -2.6
859,826 + -1.4
859,900 + +1.8
859,901 - -0.2
859,926 + -0.7
859,927 - -0.5
859,965 - -1.1
860,003 - +1.6
860,109 + +0.6
860,110 - -0.3
860,110 - -0.9
860,143 - -1.0
860,219 + -0.8
860,227 + +0.3
860,227 + -1.4
860,228 - +0.5
860,338 + -0.7
860,339 - +1.9
860,352 - -1.3

Or see this region's nucleotide sequence