Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_03660

Experiment: m.b. Cisplatin 0.035 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_03655 and CA264_03660 are separated by 97 nucleotidesCA264_03660 and CA264_03665 are separated by 492 nucleotides CA264_03655: CA264_03655 - multidrug efflux RND transporter permease subunit, at 852,144 to 855,338 _03655 CA264_03660: CA264_03660 - hypothetical protein, at 855,436 to 855,912 _03660 CA264_03665: CA264_03665 - FUSC family protein, at 856,405 to 857,457 _03665 Position (kb) 855 856Strain fitness (log2 ratio) -2 -1 0 1 2 3at 854.461 kb on + strand, within CA264_03655at 854.474 kb on + strand, within CA264_03655at 854.474 kb on + strand, within CA264_03655at 854.475 kb on - strand, within CA264_03655at 854.475 kb on - strand, within CA264_03655at 854.481 kb on + strand, within CA264_03655at 854.481 kb on + strand, within CA264_03655at 854.512 kb on - strand, within CA264_03655at 854.512 kb on - strand, within CA264_03655at 854.514 kb on + strand, within CA264_03655at 854.514 kb on + strand, within CA264_03655at 854.514 kb on + strand, within CA264_03655at 854.514 kb on + strand, within CA264_03655at 854.515 kb on - strand, within CA264_03655at 854.515 kb on - strand, within CA264_03655at 854.634 kb on - strand, within CA264_03655at 854.649 kb on + strand, within CA264_03655at 854.649 kb on + strand, within CA264_03655at 854.650 kb on - strand, within CA264_03655at 854.698 kb on + strand, within CA264_03655at 854.698 kb on + strand, within CA264_03655at 854.793 kb on - strand, within CA264_03655at 854.794 kb on + strand, within CA264_03655at 854.795 kb on - strand, within CA264_03655at 854.795 kb on - strand, within CA264_03655at 854.795 kb on - strand, within CA264_03655at 854.800 kb on + strand, within CA264_03655at 854.800 kb on + strand, within CA264_03655at 854.800 kb on + strand, within CA264_03655at 854.801 kb on - strand, within CA264_03655at 854.801 kb on - strand, within CA264_03655at 854.801 kb on - strand, within CA264_03655at 854.801 kb on - strand, within CA264_03655at 854.823 kb on + strand, within CA264_03655at 854.824 kb on - strand, within CA264_03655at 854.905 kb on + strand, within CA264_03655at 854.906 kb on - strand, within CA264_03655at 854.909 kb on + strand, within CA264_03655at 854.942 kb on + strand, within CA264_03655at 855.097 kb on + strandat 855.097 kb on + strandat 855.097 kb on + strandat 855.097 kb on + strandat 855.097 kb on + strandat 855.097 kb on + strandat 855.098 kb on - strandat 855.169 kb on + strandat 855.170 kb on - strandat 855.170 kb on - strandat 855.225 kb on + strandat 855.226 kb on - strandat 855.226 kb on - strandat 855.324 kb on + strandat 855.325 kb on - strandat 855.337 kb on - strandat 855.341 kb on - strandat 855.341 kb on - strandat 855.427 kb on + strandat 855.504 kb on + strand, within CA264_03660at 855.743 kb on - strand, within CA264_03660at 855.824 kb on - strand, within CA264_03660at 855.863 kb on - strand, within CA264_03660at 855.863 kb on - strand, within CA264_03660at 855.869 kb on + strandat 855.870 kb on - strandat 855.917 kb on + strandat 855.918 kb on - strandat 855.953 kb on + strandat 855.954 kb on - strandat 855.958 kb on + strandat 855.978 kb on - strandat 855.982 kb on + strandat 855.996 kb on + strandat 856.190 kb on + strandat 856.192 kb on + strandat 856.196 kb on + strandat 856.196 kb on + strandat 856.197 kb on - strandat 856.225 kb on - strandat 856.309 kb on - strandat 856.311 kb on + strandat 856.330 kb on - strandat 856.411 kb on - strandat 856.428 kb on - strandat 856.477 kb on - strandat 856.501 kb on + strandat 856.561 kb on + strand, within CA264_03665at 856.561 kb on + strand, within CA264_03665at 856.562 kb on - strand, within CA264_03665at 856.562 kb on - strand, within CA264_03665at 856.562 kb on - strand, within CA264_03665at 856.599 kb on - strand, within CA264_03665at 856.599 kb on - strand, within CA264_03665at 856.599 kb on - strand, within CA264_03665at 856.693 kb on + strand, within CA264_03665at 856.720 kb on + strand, within CA264_03665at 856.721 kb on - strand, within CA264_03665at 856.721 kb on - strand, within CA264_03665at 856.723 kb on + strand, within CA264_03665at 856.724 kb on - strand, within CA264_03665at 856.729 kb on - strand, within CA264_03665at 856.729 kb on - strand, within CA264_03665at 856.869 kb on + strand, within CA264_03665at 856.873 kb on + strand, within CA264_03665at 856.873 kb on + strand, within CA264_03665at 856.873 kb on + strand, within CA264_03665at 856.874 kb on - strand, within CA264_03665at 856.874 kb on - strand, within CA264_03665

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.035 mg/ml
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854,461 + CA264_03655 0.73 -2.2
854,474 + CA264_03655 0.73 -0.4
854,474 + CA264_03655 0.73 -0.8
854,475 - CA264_03655 0.73 -0.2
854,475 - CA264_03655 0.73 -1.1
854,481 + CA264_03655 0.73 -1.7
854,481 + CA264_03655 0.73 +0.8
854,512 - CA264_03655 0.74 +1.1
854,512 - CA264_03655 0.74 -1.2
854,514 + CA264_03655 0.74 -1.3
854,514 + CA264_03655 0.74 +1.4
854,514 + CA264_03655 0.74 -2.5
854,514 + CA264_03655 0.74 -1.7
854,515 - CA264_03655 0.74 +3.2
854,515 - CA264_03655 0.74 +0.4
854,634 - CA264_03655 0.78 -0.3
854,649 + CA264_03655 0.78 +1.8
854,649 + CA264_03655 0.78 +0.8
854,650 - CA264_03655 0.78 -0.8
854,698 + CA264_03655 0.80 +0.5
854,698 + CA264_03655 0.80 -0.9
854,793 - CA264_03655 0.83 +0.3
854,794 + CA264_03655 0.83 -0.7
854,795 - CA264_03655 0.83 -1.6
854,795 - CA264_03655 0.83 -0.0
854,795 - CA264_03655 0.83 -0.1
854,800 + CA264_03655 0.83 +0.7
854,800 + CA264_03655 0.83 +0.5
854,800 + CA264_03655 0.83 -0.4
854,801 - CA264_03655 0.83 +1.7
854,801 - CA264_03655 0.83 -0.2
854,801 - CA264_03655 0.83 -1.4
854,801 - CA264_03655 0.83 -1.7
854,823 + CA264_03655 0.84 -0.8
854,824 - CA264_03655 0.84 +2.6
854,905 + CA264_03655 0.86 +1.4
854,906 - CA264_03655 0.86 +0.5
854,909 + CA264_03655 0.87 +1.8
854,942 + CA264_03655 0.88 +1.8
855,097 + -0.5
855,097 + -0.8
855,097 + +1.4
855,097 + +1.6
855,097 + -1.2
855,097 + -0.7
855,098 - +0.1
855,169 + -0.5
855,170 - -0.3
855,170 - -0.6
855,225 + +1.9
855,226 - -0.1
855,226 - +0.2
855,324 + -0.3
855,325 - +0.3
855,337 - -0.9
855,341 - +0.1
855,341 - -1.4
855,427 + +0.6
855,504 + CA264_03660 0.14 -1.7
855,743 - CA264_03660 0.64 +0.5
855,824 - CA264_03660 0.81 -2.4
855,863 - CA264_03660 0.90 -0.7
855,863 - CA264_03660 0.90 +1.4
855,869 + -0.1
855,870 - +0.7
855,917 + -0.8
855,918 - -0.8
855,953 + -0.9
855,954 - -0.4
855,958 + +0.5
855,978 - -0.2
855,982 + -0.0
855,996 + +1.3
856,190 + +1.7
856,192 + -1.5
856,196 + -0.0
856,196 + -1.0
856,197 - -0.6
856,225 - +0.3
856,309 - +0.7
856,311 + -0.2
856,330 - +0.5
856,411 - -0.2
856,428 - -1.5
856,477 - +0.3
856,501 + +2.6
856,561 + CA264_03665 0.15 +1.1
856,561 + CA264_03665 0.15 -0.4
856,562 - CA264_03665 0.15 -1.1
856,562 - CA264_03665 0.15 +0.2
856,562 - CA264_03665 0.15 +0.8
856,599 - CA264_03665 0.18 +0.7
856,599 - CA264_03665 0.18 +0.0
856,599 - CA264_03665 0.18 +0.5
856,693 + CA264_03665 0.27 +0.1
856,720 + CA264_03665 0.30 +0.1
856,721 - CA264_03665 0.30 -0.8
856,721 - CA264_03665 0.30 -0.6
856,723 + CA264_03665 0.30 +0.7
856,724 - CA264_03665 0.30 -0.8
856,729 - CA264_03665 0.31 +0.3
856,729 - CA264_03665 0.31 -0.5
856,869 + CA264_03665 0.44 -0.8
856,873 + CA264_03665 0.44 -0.0
856,873 + CA264_03665 0.44 +0.7
856,873 + CA264_03665 0.44 -1.5
856,874 - CA264_03665 0.45 -1.0
856,874 - CA264_03665 0.45 +0.8

Or see this region's nucleotide sequence