Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_03650

Experiment: m.b. Cisplatin 0.035 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_03645 and CA264_03650 are separated by 20 nucleotidesCA264_03650 and CA264_03655 are separated by 25 nucleotides CA264_03645: CA264_03645 - hypothetical protein, at 849,618 to 850,949 _03645 CA264_03650: CA264_03650 - MexE family multidrug efflux RND transporter periplasmic adaptor subunit, at 850,970 to 852,118 _03650 CA264_03655: CA264_03655 - multidrug efflux RND transporter permease subunit, at 852,144 to 855,338 _03655 Position (kb) 850 851 852 853Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 850.058 kb on - strand, within CA264_03645at 850.146 kb on + strand, within CA264_03645at 850.167 kb on + strand, within CA264_03645at 850.167 kb on + strand, within CA264_03645at 850.168 kb on - strand, within CA264_03645at 850.168 kb on - strand, within CA264_03645at 850.183 kb on + strand, within CA264_03645at 850.278 kb on + strand, within CA264_03645at 850.363 kb on + strand, within CA264_03645at 850.363 kb on + strand, within CA264_03645at 850.489 kb on - strand, within CA264_03645at 850.498 kb on - strand, within CA264_03645at 850.509 kb on + strand, within CA264_03645at 850.509 kb on + strand, within CA264_03645at 850.537 kb on - strand, within CA264_03645at 850.609 kb on - strandat 850.660 kb on + strand, within CA264_03645at 850.661 kb on - strand, within CA264_03645at 850.715 kb on + strand, within CA264_03645at 850.725 kb on + strand, within CA264_03645at 850.725 kb on + strand, within CA264_03645at 850.776 kb on + strand, within CA264_03645at 850.777 kb on - strand, within CA264_03645at 850.818 kb on + strandat 850.819 kb on - strandat 850.870 kb on - strandat 850.872 kb on + strandat 850.872 kb on + strandat 850.873 kb on - strandat 850.933 kb on + strandat 850.933 kb on + strandat 850.963 kb on - strandat 850.979 kb on - strandat 850.982 kb on + strandat 851.018 kb on - strandat 851.020 kb on - strandat 851.131 kb on + strand, within CA264_03650at 851.131 kb on + strand, within CA264_03650at 851.131 kb on + strand, within CA264_03650at 851.207 kb on + strand, within CA264_03650at 851.271 kb on - strand, within CA264_03650at 851.397 kb on + strand, within CA264_03650at 851.398 kb on - strand, within CA264_03650at 851.398 kb on - strand, within CA264_03650at 851.402 kb on + strand, within CA264_03650at 851.402 kb on + strand, within CA264_03650at 851.621 kb on - strand, within CA264_03650at 851.647 kb on - strand, within CA264_03650at 851.712 kb on - strand, within CA264_03650at 851.773 kb on + strand, within CA264_03650at 851.774 kb on - strand, within CA264_03650at 851.912 kb on + strand, within CA264_03650at 851.912 kb on + strand, within CA264_03650at 851.912 kb on + strand, within CA264_03650at 851.912 kb on + strand, within CA264_03650at 851.912 kb on + strand, within CA264_03650at 851.913 kb on - strand, within CA264_03650at 851.913 kb on - strand, within CA264_03650at 851.913 kb on - strand, within CA264_03650at 851.913 kb on - strand, within CA264_03650at 851.913 kb on - strand, within CA264_03650at 851.918 kb on + strand, within CA264_03650at 851.918 kb on + strand, within CA264_03650at 851.918 kb on + strand, within CA264_03650at 851.919 kb on - strand, within CA264_03650at 851.919 kb on - strand, within CA264_03650at 851.919 kb on - strand, within CA264_03650at 851.919 kb on - strand, within CA264_03650at 851.919 kb on - strand, within CA264_03650at 851.922 kb on + strand, within CA264_03650at 851.922 kb on + strand, within CA264_03650at 852.025 kb on - strandat 852.035 kb on - strandat 852.157 kb on + strandat 852.161 kb on + strandat 852.163 kb on + strandat 852.182 kb on + strandat 852.184 kb on + strandat 852.194 kb on + strandat 852.195 kb on - strandat 852.195 kb on - strandat 852.196 kb on + strandat 852.196 kb on + strandat 852.196 kb on + strandat 852.196 kb on + strandat 852.225 kb on - strandat 852.257 kb on + strandat 852.291 kb on + strandat 852.292 kb on - strandat 852.292 kb on - strandat 852.294 kb on - strandat 852.375 kb on + strandat 852.375 kb on + strandat 852.376 kb on - strandat 852.376 kb on - strandat 852.380 kb on + strandat 852.380 kb on + strandat 852.386 kb on + strandat 852.387 kb on - strandat 852.511 kb on + strand, within CA264_03655at 852.616 kb on - strand, within CA264_03655at 852.616 kb on - strand, within CA264_03655at 852.627 kb on + strand, within CA264_03655at 852.627 kb on + strand, within CA264_03655at 852.627 kb on + strand, within CA264_03655at 852.628 kb on - strand, within CA264_03655at 852.628 kb on - strand, within CA264_03655at 852.628 kb on - strand, within CA264_03655at 852.719 kb on + strand, within CA264_03655at 852.733 kb on - strand, within CA264_03655at 852.756 kb on - strand, within CA264_03655at 852.756 kb on - strand, within CA264_03655at 852.894 kb on - strand, within CA264_03655at 852.930 kb on + strand, within CA264_03655at 852.930 kb on + strand, within CA264_03655at 852.972 kb on + strand, within CA264_03655at 853.064 kb on + strand, within CA264_03655at 853.068 kb on + strand, within CA264_03655at 853.068 kb on + strand, within CA264_03655

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.035 mg/ml
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850,058 - CA264_03645 0.33 -0.8
850,146 + CA264_03645 0.40 +1.6
850,167 + CA264_03645 0.41 +0.4
850,167 + CA264_03645 0.41 -0.4
850,168 - CA264_03645 0.41 -0.4
850,168 - CA264_03645 0.41 +2.3
850,183 + CA264_03645 0.42 -0.0
850,278 + CA264_03645 0.50 -1.1
850,363 + CA264_03645 0.56 -0.9
850,363 + CA264_03645 0.56 -0.9
850,489 - CA264_03645 0.65 -0.9
850,498 - CA264_03645 0.66 -0.0
850,509 + CA264_03645 0.67 +2.3
850,509 + CA264_03645 0.67 -1.8
850,537 - CA264_03645 0.69 +0.9
850,609 - +2.2
850,660 + CA264_03645 0.78 +0.6
850,661 - CA264_03645 0.78 -0.3
850,715 + CA264_03645 0.82 -2.1
850,725 + CA264_03645 0.83 -0.6
850,725 + CA264_03645 0.83 -1.0
850,776 + CA264_03645 0.87 +0.6
850,777 - CA264_03645 0.87 +1.0
850,818 + -0.5
850,819 - -1.2
850,870 - +0.4
850,872 + -2.1
850,872 + +2.9
850,873 - -1.2
850,933 + -0.8
850,933 + -0.0
850,963 - -0.4
850,979 - -1.5
850,982 + +0.1
851,018 - -2.4
851,020 - -0.1
851,131 + CA264_03650 0.14 +0.6
851,131 + CA264_03650 0.14 -0.5
851,131 + CA264_03650 0.14 -0.4
851,207 + CA264_03650 0.21 -1.6
851,271 - CA264_03650 0.26 -0.3
851,397 + CA264_03650 0.37 +0.5
851,398 - CA264_03650 0.37 +0.8
851,398 - CA264_03650 0.37 +0.8
851,402 + CA264_03650 0.38 -0.0
851,402 + CA264_03650 0.38 +0.2
851,621 - CA264_03650 0.57 +1.3
851,647 - CA264_03650 0.59 -1.4
851,712 - CA264_03650 0.65 -1.7
851,773 + CA264_03650 0.70 -0.9
851,774 - CA264_03650 0.70 -0.4
851,912 + CA264_03650 0.82 -0.7
851,912 + CA264_03650 0.82 +3.2
851,912 + CA264_03650 0.82 -0.7
851,912 + CA264_03650 0.82 -0.3
851,912 + CA264_03650 0.82 -0.1
851,913 - CA264_03650 0.82 -0.1
851,913 - CA264_03650 0.82 +0.4
851,913 - CA264_03650 0.82 +0.2
851,913 - CA264_03650 0.82 +0.0
851,913 - CA264_03650 0.82 +3.2
851,918 + CA264_03650 0.83 -0.5
851,918 + CA264_03650 0.83 +4.5
851,918 + CA264_03650 0.83 +1.8
851,919 - CA264_03650 0.83 -0.4
851,919 - CA264_03650 0.83 -1.9
851,919 - CA264_03650 0.83 +1.3
851,919 - CA264_03650 0.83 -1.2
851,919 - CA264_03650 0.83 +2.6
851,922 + CA264_03650 0.83 -1.4
851,922 + CA264_03650 0.83 -0.8
852,025 - +3.2
852,035 - +1.3
852,157 + -0.6
852,161 + -0.7
852,163 + +2.2
852,182 + -0.2
852,184 + +0.2
852,194 + -1.9
852,195 - -1.5
852,195 - +1.0
852,196 + -2.5
852,196 + +0.3
852,196 + +0.7
852,196 + -0.4
852,225 - -0.2
852,257 + -0.2
852,291 + +1.6
852,292 - +1.6
852,292 - +1.8
852,294 - -1.2
852,375 + -0.3
852,375 + +0.0
852,376 - +0.1
852,376 - -0.1
852,380 + -0.5
852,380 + -0.0
852,386 + -1.7
852,387 - -0.9
852,511 + CA264_03655 0.11 +0.2
852,616 - CA264_03655 0.15 -0.2
852,616 - CA264_03655 0.15 -1.2
852,627 + CA264_03655 0.15 +1.4
852,627 + CA264_03655 0.15 +1.0
852,627 + CA264_03655 0.15 +0.0
852,628 - CA264_03655 0.15 -0.8
852,628 - CA264_03655 0.15 -0.5
852,628 - CA264_03655 0.15 +0.7
852,719 + CA264_03655 0.18 +2.3
852,733 - CA264_03655 0.18 +0.3
852,756 - CA264_03655 0.19 -0.1
852,756 - CA264_03655 0.19 -0.4
852,894 - CA264_03655 0.23 +2.4
852,930 + CA264_03655 0.25 -1.2
852,930 + CA264_03655 0.25 +0.5
852,972 + CA264_03655 0.26 -0.7
853,064 + CA264_03655 0.29 -0.4
853,068 + CA264_03655 0.29 +1.0
853,068 + CA264_03655 0.29 -1.3

Or see this region's nucleotide sequence