Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_03440

Experiment: m.b. Cisplatin 0.035 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_03435 and CA264_03440 are separated by 246 nucleotidesCA264_03440 and CA264_03445 are separated by 341 nucleotides CA264_03435: CA264_03435 - hypothetical protein, at 800,647 to 801,348 _03435 CA264_03440: CA264_03440 - DoxX family protein, at 801,595 to 801,993 _03440 CA264_03445: CA264_03445 - anhydro-N-acetylmuramic acid kinase, at 802,335 to 803,534 _03445 Position (kb) 801 802Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 800.614 kb on - strandat 800.618 kb on + strandat 800.618 kb on + strandat 800.619 kb on - strandat 800.619 kb on - strandat 800.621 kb on - strandat 800.658 kb on + strandat 800.811 kb on - strand, within CA264_03435at 800.846 kb on - strand, within CA264_03435at 800.857 kb on + strand, within CA264_03435at 800.977 kb on + strand, within CA264_03435at 801.040 kb on + strand, within CA264_03435at 801.041 kb on - strand, within CA264_03435at 801.043 kb on + strand, within CA264_03435at 801.080 kb on - strand, within CA264_03435at 801.080 kb on - strand, within CA264_03435at 801.128 kb on + strand, within CA264_03435at 801.129 kb on - strand, within CA264_03435at 801.129 kb on - strand, within CA264_03435at 801.129 kb on - strand, within CA264_03435at 801.183 kb on + strand, within CA264_03435at 801.195 kb on + strand, within CA264_03435at 801.196 kb on - strand, within CA264_03435at 801.196 kb on - strand, within CA264_03435at 801.287 kb on + strandat 801.288 kb on - strandat 801.401 kb on + strandat 801.427 kb on + strandat 801.428 kb on - strandat 801.428 kb on - strandat 801.428 kb on - strandat 801.429 kb on + strandat 801.430 kb on - strandat 801.430 kb on - strandat 801.430 kb on - strandat 801.475 kb on - strandat 801.489 kb on + strandat 801.489 kb on + strandat 801.490 kb on - strandat 801.490 kb on - strandat 801.490 kb on - strandat 801.490 kb on - strandat 801.498 kb on - strandat 801.547 kb on + strandat 801.549 kb on + strandat 801.553 kb on + strandat 801.554 kb on - strandat 801.554 kb on - strandat 801.567 kb on + strandat 801.604 kb on + strandat 801.604 kb on + strandat 801.604 kb on + strandat 801.604 kb on + strandat 801.666 kb on + strand, within CA264_03440at 801.667 kb on - strand, within CA264_03440at 801.775 kb on - strand, within CA264_03440at 801.907 kb on + strand, within CA264_03440at 801.908 kb on - strand, within CA264_03440at 801.925 kb on + strand, within CA264_03440at 801.926 kb on - strand, within CA264_03440at 801.926 kb on - strand, within CA264_03440at 801.984 kb on + strandat 802.004 kb on + strandat 802.010 kb on + strandat 802.011 kb on - strandat 802.011 kb on - strandat 802.011 kb on - strandat 802.013 kb on + strandat 802.014 kb on - strandat 802.074 kb on - strandat 802.077 kb on + strandat 802.077 kb on + strandat 802.077 kb on + strandat 802.077 kb on + strandat 802.077 kb on + strandat 802.078 kb on - strandat 802.078 kb on - strandat 802.078 kb on - strandat 802.110 kb on + strandat 802.111 kb on - strandat 802.111 kb on - strandat 802.117 kb on - strandat 802.117 kb on - strandat 802.217 kb on - strandat 802.229 kb on + strandat 802.230 kb on - strandat 802.231 kb on + strandat 802.231 kb on + strandat 802.231 kb on + strandat 802.232 kb on - strandat 802.238 kb on + strandat 802.238 kb on + strandat 802.324 kb on + strandat 802.324 kb on + strandat 802.325 kb on - strandat 802.334 kb on + strandat 802.335 kb on - strandat 802.388 kb on + strandat 802.433 kb on - strandat 802.433 kb on - strandat 802.536 kb on - strand, within CA264_03445at 802.587 kb on + strand, within CA264_03445at 802.588 kb on - strand, within CA264_03445at 802.588 kb on - strand, within CA264_03445at 802.689 kb on + strand, within CA264_03445at 802.690 kb on - strand, within CA264_03445at 802.690 kb on - strand, within CA264_03445at 802.690 kb on - strandat 802.712 kb on + strand, within CA264_03445at 802.712 kb on + strand, within CA264_03445at 802.713 kb on - strand, within CA264_03445at 802.717 kb on + strand, within CA264_03445at 802.717 kb on + strand, within CA264_03445at 802.717 kb on + strand, within CA264_03445at 802.742 kb on - strand, within CA264_03445at 802.742 kb on - strand, within CA264_03445at 802.747 kb on + strand, within CA264_03445at 802.747 kb on + strand, within CA264_03445at 802.748 kb on - strand, within CA264_03445at 802.787 kb on - strand, within CA264_03445at 802.787 kb on - strand, within CA264_03445at 802.787 kb on - strand, within CA264_03445at 802.861 kb on - strand, within CA264_03445at 802.901 kb on + strand, within CA264_03445at 802.901 kb on + strand, within CA264_03445at 802.950 kb on - strand, within CA264_03445at 802.993 kb on + strand, within CA264_03445

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.035 mg/ml
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800,614 - -0.0
800,618 + -0.1
800,618 + +1.8
800,619 - +0.2
800,619 - -0.8
800,621 - +1.6
800,658 + -0.2
800,811 - CA264_03435 0.23 -1.3
800,846 - CA264_03435 0.28 -2.8
800,857 + CA264_03435 0.30 -0.6
800,977 + CA264_03435 0.47 -0.2
801,040 + CA264_03435 0.56 -0.9
801,041 - CA264_03435 0.56 -0.0
801,043 + CA264_03435 0.56 -1.1
801,080 - CA264_03435 0.62 +0.6
801,080 - CA264_03435 0.62 +0.3
801,128 + CA264_03435 0.69 -1.1
801,129 - CA264_03435 0.69 -0.2
801,129 - CA264_03435 0.69 +1.8
801,129 - CA264_03435 0.69 +0.6
801,183 + CA264_03435 0.76 -0.5
801,195 + CA264_03435 0.78 -1.8
801,196 - CA264_03435 0.78 -0.4
801,196 - CA264_03435 0.78 -0.8
801,287 + +0.8
801,288 - -1.1
801,401 + +0.5
801,427 + -1.1
801,428 - +2.7
801,428 - +2.1
801,428 - -0.1
801,429 + +2.3
801,430 - +0.4
801,430 - -0.7
801,430 - -0.3
801,475 - +0.2
801,489 + +0.1
801,489 + +1.1
801,490 - +0.5
801,490 - -2.7
801,490 - -0.6
801,490 - -2.4
801,498 - +0.8
801,547 + -0.4
801,549 + +2.9
801,553 + +1.3
801,554 - -0.4
801,554 - -0.8
801,567 + +0.1
801,604 + +2.4
801,604 + -0.2
801,604 + -0.7
801,604 + +0.3
801,666 + CA264_03440 0.18 -1.4
801,667 - CA264_03440 0.18 +2.7
801,775 - CA264_03440 0.45 -0.8
801,907 + CA264_03440 0.78 -2.5
801,908 - CA264_03440 0.78 -0.5
801,925 + CA264_03440 0.83 -1.1
801,926 - CA264_03440 0.83 +1.0
801,926 - CA264_03440 0.83 +0.9
801,984 + +0.1
802,004 + -1.0
802,010 + +0.9
802,011 - +1.5
802,011 - +0.6
802,011 - -0.1
802,013 + -0.8
802,014 - +3.4
802,074 - +0.3
802,077 + -0.4
802,077 + -1.1
802,077 + -2.3
802,077 + -0.8
802,077 + -0.1
802,078 - +1.7
802,078 - -1.2
802,078 - -0.3
802,110 + +1.8
802,111 - +2.1
802,111 - +0.5
802,117 - -1.2
802,117 - +0.1
802,217 - +1.8
802,229 + -0.2
802,230 - -1.4
802,231 + -0.8
802,231 + -2.1
802,231 + -1.1
802,232 - -1.4
802,238 + -0.9
802,238 + -0.8
802,324 + -0.1
802,324 + -0.1
802,325 - -2.2
802,334 + +2.1
802,335 - +1.1
802,388 + +0.8
802,433 - +0.8
802,433 - +0.2
802,536 - CA264_03445 0.17 -0.9
802,587 + CA264_03445 0.21 -0.5
802,588 - CA264_03445 0.21 +0.8
802,588 - CA264_03445 0.21 +2.0
802,689 + CA264_03445 0.29 -2.0
802,690 - CA264_03445 0.30 +2.2
802,690 - CA264_03445 0.30 +0.3
802,690 - +2.8
802,712 + CA264_03445 0.31 +0.3
802,712 + CA264_03445 0.31 -0.8
802,713 - CA264_03445 0.32 -0.0
802,717 + CA264_03445 0.32 +1.1
802,717 + CA264_03445 0.32 +1.8
802,717 + CA264_03445 0.32 +0.1
802,742 - CA264_03445 0.34 +4.1
802,742 - CA264_03445 0.34 -2.3
802,747 + CA264_03445 0.34 +0.4
802,747 + CA264_03445 0.34 +1.0
802,748 - CA264_03445 0.34 +2.6
802,787 - CA264_03445 0.38 +0.1
802,787 - CA264_03445 0.38 -1.0
802,787 - CA264_03445 0.38 -0.2
802,861 - CA264_03445 0.44 -0.1
802,901 + CA264_03445 0.47 +0.4
802,901 + CA264_03445 0.47 +2.5
802,950 - CA264_03445 0.51 +0.6
802,993 + CA264_03445 0.55 -1.0

Or see this region's nucleotide sequence