Experiment: m.b. Cisplatin 0.035 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_03030 and CA264_03035 are separated by 209 nucleotides CA264_03035 and CA264_03040 are separated by 82 nucleotides
CA264_03030: CA264_03030 - T9SS C-terminal target domain-containing protein, at 699,941 to 702,130
_03030
CA264_03035: CA264_03035 - T9SS C-terminal target domain-containing protein, at 702,340 to 705,885
_03035
CA264_03040: CA264_03040 - hypothetical protein, at 705,968 to 708,811
_03040
Position (kb) 702
703
704
705
706 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 701.369 kb on + strand, within CA264_03030 at 701.369 kb on + strand, within CA264_03030 at 701.369 kb on + strand, within CA264_03030 at 701.370 kb on - strand, within CA264_03030 at 701.370 kb on - strand, within CA264_03030 at 701.405 kb on - strand, within CA264_03030 at 701.408 kb on + strand, within CA264_03030 at 701.408 kb on + strand, within CA264_03030 at 701.478 kb on - strand, within CA264_03030 at 701.499 kb on + strand, within CA264_03030 at 701.558 kb on + strand, within CA264_03030 at 701.558 kb on + strand, within CA264_03030 at 701.559 kb on - strand, within CA264_03030 at 701.729 kb on - strand, within CA264_03030 at 701.744 kb on + strand, within CA264_03030 at 701.747 kb on - strand, within CA264_03030 at 701.758 kb on + strand, within CA264_03030 at 701.758 kb on + strand, within CA264_03030 at 701.760 kb on + strand, within CA264_03030 at 701.760 kb on + strand, within CA264_03030 at 701.787 kb on - strand, within CA264_03030 at 701.794 kb on + strand, within CA264_03030 at 701.819 kb on + strand, within CA264_03030 at 701.820 kb on - strand, within CA264_03030 at 701.840 kb on - strand, within CA264_03030 at 701.840 kb on - strand, within CA264_03030 at 701.883 kb on - strand, within CA264_03030 at 701.899 kb on - strand, within CA264_03030 at 702.015 kb on - strand at 702.068 kb on + strand at 702.070 kb on + strand at 702.071 kb on - strand at 702.189 kb on + strand at 702.189 kb on + strand at 702.195 kb on + strand at 702.196 kb on - strand at 702.198 kb on - strand at 702.198 kb on - strand at 702.204 kb on - strand at 702.213 kb on + strand at 702.214 kb on - strand at 702.217 kb on + strand at 702.241 kb on - strand at 702.431 kb on + strand at 702.439 kb on - strand at 702.450 kb on + strand at 702.451 kb on - strand at 702.451 kb on - strand at 702.463 kb on - strand at 702.463 kb on - strand at 702.489 kb on + strand at 702.490 kb on - strand at 702.571 kb on + strand at 702.571 kb on + strand at 702.572 kb on - strand at 702.572 kb on - strand at 702.656 kb on + strand at 702.656 kb on + strand at 702.728 kb on - strand, within CA264_03035 at 702.740 kb on + strand, within CA264_03035 at 702.740 kb on + strand, within CA264_03035 at 702.781 kb on + strand, within CA264_03035 at 702.781 kb on + strand, within CA264_03035 at 702.782 kb on - strand, within CA264_03035 at 702.782 kb on - strand, within CA264_03035 at 702.782 kb on - strand, within CA264_03035 at 702.782 kb on - strand, within CA264_03035 at 702.782 kb on - strand, within CA264_03035 at 702.782 kb on - strand, within CA264_03035 at 702.803 kb on - strand, within CA264_03035 at 702.880 kb on - strand, within CA264_03035 at 702.912 kb on + strand, within CA264_03035 at 702.922 kb on - strand, within CA264_03035 at 702.925 kb on + strand, within CA264_03035 at 702.926 kb on - strand, within CA264_03035 at 702.926 kb on - strand, within CA264_03035 at 702.926 kb on - strand, within CA264_03035 at 702.926 kb on - strand, within CA264_03035 at 703.091 kb on + strand, within CA264_03035 at 703.124 kb on + strand, within CA264_03035 at 703.140 kb on + strand, within CA264_03035 at 703.196 kb on - strand, within CA264_03035 at 703.196 kb on - strand, within CA264_03035 at 703.196 kb on - strand, within CA264_03035 at 703.196 kb on - strand, within CA264_03035 at 703.355 kb on + strand, within CA264_03035 at 703.374 kb on + strand, within CA264_03035 at 703.375 kb on - strand, within CA264_03035 at 703.420 kb on + strand, within CA264_03035 at 703.421 kb on - strand, within CA264_03035 at 703.421 kb on - strand, within CA264_03035 at 703.421 kb on - strand, within CA264_03035 at 703.423 kb on + strand, within CA264_03035 at 703.498 kb on + strand, within CA264_03035 at 703.498 kb on + strand, within CA264_03035 at 703.509 kb on - strand, within CA264_03035 at 703.547 kb on - strand, within CA264_03035 at 703.547 kb on - strand, within CA264_03035 at 703.559 kb on - strand, within CA264_03035 at 703.597 kb on - strand, within CA264_03035 at 703.825 kb on + strand, within CA264_03035 at 703.826 kb on - strand, within CA264_03035 at 703.966 kb on + strand, within CA264_03035 at 703.967 kb on - strand, within CA264_03035 at 703.967 kb on - strand, within CA264_03035 at 703.970 kb on - strand, within CA264_03035 at 703.970 kb on - strand, within CA264_03035 at 703.978 kb on + strand, within CA264_03035 at 704.008 kb on + strand, within CA264_03035 at 704.008 kb on + strand, within CA264_03035 at 704.009 kb on - strand, within CA264_03035 at 704.009 kb on - strand, within CA264_03035 at 704.128 kb on + strand, within CA264_03035 at 704.128 kb on + strand, within CA264_03035 at 704.128 kb on + strand, within CA264_03035 at 704.214 kb on + strand, within CA264_03035 at 704.214 kb on + strand, within CA264_03035 at 704.214 kb on + strand, within CA264_03035 at 704.309 kb on + strand, within CA264_03035 at 704.309 kb on + strand, within CA264_03035 at 704.309 kb on + strand, within CA264_03035 at 704.357 kb on - strand, within CA264_03035 at 704.410 kb on + strand, within CA264_03035 at 704.410 kb on + strand, within CA264_03035 at 704.411 kb on - strand, within CA264_03035 at 704.492 kb on + strand, within CA264_03035 at 704.493 kb on - strand, within CA264_03035 at 704.517 kb on + strand, within CA264_03035 at 704.517 kb on + strand, within CA264_03035 at 704.518 kb on - strand, within CA264_03035 at 704.522 kb on - strand, within CA264_03035 at 704.546 kb on + strand, within CA264_03035 at 704.723 kb on + strand, within CA264_03035 at 704.729 kb on - strand, within CA264_03035 at 704.729 kb on - strand, within CA264_03035 at 704.743 kb on - strand, within CA264_03035 at 704.776 kb on - strand, within CA264_03035 at 704.776 kb on - strand, within CA264_03035 at 704.810 kb on - strand, within CA264_03035 at 704.927 kb on + strand, within CA264_03035 at 704.927 kb on + strand, within CA264_03035 at 704.932 kb on + strand, within CA264_03035 at 704.933 kb on - strand, within CA264_03035 at 704.965 kb on + strand, within CA264_03035 at 704.967 kb on + strand, within CA264_03035 at 704.968 kb on - strand, within CA264_03035 at 704.972 kb on - strand, within CA264_03035 at 704.979 kb on + strand, within CA264_03035 at 704.980 kb on - strand, within CA264_03035 at 704.997 kb on - strand, within CA264_03035 at 705.054 kb on + strand, within CA264_03035 at 705.079 kb on + strand, within CA264_03035 at 705.079 kb on + strand, within CA264_03035 at 705.079 kb on + strand, within CA264_03035 at 705.080 kb on - strand, within CA264_03035 at 705.080 kb on - strand, within CA264_03035 at 705.080 kb on - strand, within CA264_03035 at 705.080 kb on - strand, within CA264_03035 at 705.166 kb on - strand, within CA264_03035 at 705.312 kb on - strand, within CA264_03035 at 705.331 kb on + strand, within CA264_03035 at 705.332 kb on - strand, within CA264_03035 at 705.332 kb on - strand, within CA264_03035 at 705.377 kb on - strand, within CA264_03035 at 705.377 kb on - strand, within CA264_03035 at 705.457 kb on + strand, within CA264_03035 at 705.457 kb on + strand, within CA264_03035 at 705.457 kb on + strand, within CA264_03035 at 705.508 kb on - strand, within CA264_03035 at 705.512 kb on + strand, within CA264_03035 at 705.512 kb on + strand, within CA264_03035 at 705.512 kb on + strand, within CA264_03035 at 705.513 kb on - strand, within CA264_03035 at 705.543 kb on - strand at 705.543 kb on - strand at 705.543 kb on - strand at 705.549 kb on + strand at 705.550 kb on - strand at 705.687 kb on - strand at 705.726 kb on + strand at 705.727 kb on - strand at 705.733 kb on - strand at 705.809 kb on + strand at 705.809 kb on + strand at 705.810 kb on - strand at 705.810 kb on - strand at 705.821 kb on + strand at 705.823 kb on + strand at 705.824 kb on - strand at 705.949 kb on - strand at 705.985 kb on + strand at 705.985 kb on + strand at 706.015 kb on + strand at 706.016 kb on - strand at 706.017 kb on + strand at 706.018 kb on - strand at 706.029 kb on + strand at 706.029 kb on + strand at 706.029 kb on + strand at 706.029 kb on + strand at 706.030 kb on - strand at 706.030 kb on - strand at 706.030 kb on - strand at 706.030 kb on - strand at 706.101 kb on + strand at 706.107 kb on - strand at 706.107 kb on - strand at 706.107 kb on - strand at 706.149 kb on - strand at 706.149 kb on - strand at 706.149 kb on - strand at 706.149 kb on - strand at 706.200 kb on + strand at 706.200 kb on + strand at 706.330 kb on + strand, within CA264_03040 at 706.377 kb on - strand, within CA264_03040 at 706.837 kb on + strand, within CA264_03040
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.035 mg/ml remove 701,369 + CA264_03030 0.65 +1.0 701,369 + CA264_03030 0.65 +1.1 701,369 + CA264_03030 0.65 +0.2 701,370 - CA264_03030 0.65 +0.5 701,370 - CA264_03030 0.65 -0.4 701,405 - CA264_03030 0.67 -0.9 701,408 + CA264_03030 0.67 +2.0 701,408 + CA264_03030 0.67 -1.3 701,478 - CA264_03030 0.70 -0.2 701,499 + CA264_03030 0.71 +0.6 701,558 + CA264_03030 0.74 +1.2 701,558 + CA264_03030 0.74 +0.3 701,559 - CA264_03030 0.74 +0.5 701,729 - CA264_03030 0.82 +0.3 701,744 + CA264_03030 0.82 -0.0 701,747 - CA264_03030 0.82 +0.1 701,758 + CA264_03030 0.83 -1.8 701,758 + CA264_03030 0.83 +1.4 701,760 + CA264_03030 0.83 -1.3 701,760 + CA264_03030 0.83 -1.6 701,787 - CA264_03030 0.84 -0.6 701,794 + CA264_03030 0.85 +1.6 701,819 + CA264_03030 0.86 -1.3 701,820 - CA264_03030 0.86 +1.5 701,840 - CA264_03030 0.87 +0.7 701,840 - CA264_03030 0.87 +1.0 701,883 - CA264_03030 0.89 +0.2 701,899 - CA264_03030 0.89 +3.6 702,015 - +1.5 702,068 + +0.8 702,070 + +0.2 702,071 - -1.7 702,189 + -2.4 702,189 + -1.8 702,195 + +0.7 702,196 - -1.8 702,198 - +3.7 702,198 - -1.2 702,204 - -0.9 702,213 + -1.2 702,214 - +0.2 702,217 + -0.5 702,241 - -1.8 702,431 + -0.7 702,439 - -1.4 702,450 + +0.5 702,451 - +0.9 702,451 - +0.5 702,463 - -0.2 702,463 - -0.1 702,489 + -1.0 702,490 - -0.2 702,571 + -1.9 702,571 + +1.3 702,572 - -0.7 702,572 - -1.7 702,656 + -0.5 702,656 + -1.5 702,728 - CA264_03035 0.11 -1.9 702,740 + CA264_03035 0.11 -0.9 702,740 + CA264_03035 0.11 +0.0 702,781 + CA264_03035 0.12 -0.6 702,781 + CA264_03035 0.12 +1.2 702,782 - CA264_03035 0.12 -0.5 702,782 - CA264_03035 0.12 -1.5 702,782 - CA264_03035 0.12 -0.1 702,782 - CA264_03035 0.12 -2.6 702,782 - CA264_03035 0.12 -0.4 702,782 - CA264_03035 0.12 -1.7 702,803 - CA264_03035 0.13 -1.7 702,880 - CA264_03035 0.15 -0.3 702,912 + CA264_03035 0.16 -0.4 702,922 - CA264_03035 0.16 +0.5 702,925 + CA264_03035 0.16 -1.2 702,926 - CA264_03035 0.17 -0.5 702,926 - CA264_03035 0.17 -1.3 702,926 - CA264_03035 0.17 -0.1 702,926 - CA264_03035 0.17 -1.4 703,091 + CA264_03035 0.21 -0.1 703,124 + CA264_03035 0.22 -1.0 703,140 + CA264_03035 0.23 +0.4 703,196 - CA264_03035 0.24 -0.2 703,196 - CA264_03035 0.24 +0.6 703,196 - CA264_03035 0.24 +1.0 703,196 - CA264_03035 0.24 +0.7 703,355 + CA264_03035 0.29 -0.1 703,374 + CA264_03035 0.29 -0.9 703,375 - CA264_03035 0.29 -0.6 703,420 + CA264_03035 0.30 -0.5 703,421 - CA264_03035 0.30 +0.8 703,421 - CA264_03035 0.30 -1.2 703,421 - CA264_03035 0.30 -0.9 703,423 + CA264_03035 0.31 +0.4 703,498 + CA264_03035 0.33 -0.4 703,498 + CA264_03035 0.33 +1.7 703,509 - CA264_03035 0.33 -0.9 703,547 - CA264_03035 0.34 -0.3 703,547 - CA264_03035 0.34 -0.5 703,559 - CA264_03035 0.34 +0.5 703,597 - CA264_03035 0.35 -1.5 703,825 + CA264_03035 0.42 -0.7 703,826 - CA264_03035 0.42 +0.4 703,966 + CA264_03035 0.46 +1.0 703,967 - CA264_03035 0.46 -1.2 703,967 - CA264_03035 0.46 +0.3 703,970 - CA264_03035 0.46 +0.2 703,970 - CA264_03035 0.46 -0.4 703,978 + CA264_03035 0.46 -2.8 704,008 + CA264_03035 0.47 +0.5 704,008 + CA264_03035 0.47 -0.3 704,009 - CA264_03035 0.47 +1.7 704,009 - CA264_03035 0.47 -0.2 704,128 + CA264_03035 0.50 -1.9 704,128 + CA264_03035 0.50 +0.0 704,128 + CA264_03035 0.50 +1.7 704,214 + CA264_03035 0.53 +0.5 704,214 + CA264_03035 0.53 +0.2 704,214 + CA264_03035 0.53 -2.4 704,309 + CA264_03035 0.56 +0.5 704,309 + CA264_03035 0.56 +0.4 704,309 + CA264_03035 0.56 -1.1 704,357 - CA264_03035 0.57 -1.0 704,410 + CA264_03035 0.58 +3.0 704,410 + CA264_03035 0.58 +0.5 704,411 - CA264_03035 0.58 -1.3 704,492 + CA264_03035 0.61 -1.1 704,493 - CA264_03035 0.61 -0.0 704,517 + CA264_03035 0.61 +2.7 704,517 + CA264_03035 0.61 -0.3 704,518 - CA264_03035 0.61 -1.1 704,522 - CA264_03035 0.62 -1.3 704,546 + CA264_03035 0.62 +0.1 704,723 + CA264_03035 0.67 -0.4 704,729 - CA264_03035 0.67 -1.3 704,729 - CA264_03035 0.67 +1.4 704,743 - CA264_03035 0.68 -2.0 704,776 - CA264_03035 0.69 -0.2 704,776 - CA264_03035 0.69 -1.9 704,810 - CA264_03035 0.70 +0.1 704,927 + CA264_03035 0.73 -1.2 704,927 + CA264_03035 0.73 -0.0 704,932 + CA264_03035 0.73 -0.7 704,933 - CA264_03035 0.73 -0.8 704,965 + CA264_03035 0.74 -1.4 704,967 + CA264_03035 0.74 -1.0 704,968 - CA264_03035 0.74 +0.4 704,972 - CA264_03035 0.74 -0.6 704,979 + CA264_03035 0.74 -1.3 704,980 - CA264_03035 0.74 +0.3 704,997 - CA264_03035 0.75 -0.0 705,054 + CA264_03035 0.77 -1.7 705,079 + CA264_03035 0.77 +0.9 705,079 + CA264_03035 0.77 -2.2 705,079 + CA264_03035 0.77 -2.6 705,080 - CA264_03035 0.77 -1.5 705,080 - CA264_03035 0.77 +0.3 705,080 - CA264_03035 0.77 -1.4 705,080 - CA264_03035 0.77 -0.5 705,166 - CA264_03035 0.80 -1.6 705,312 - CA264_03035 0.84 -1.3 705,331 + CA264_03035 0.84 +0.2 705,332 - CA264_03035 0.84 -0.7 705,332 - CA264_03035 0.84 -0.4 705,377 - CA264_03035 0.86 +1.7 705,377 - CA264_03035 0.86 -0.9 705,457 + CA264_03035 0.88 -0.8 705,457 + CA264_03035 0.88 +0.2 705,457 + CA264_03035 0.88 -1.3 705,508 - CA264_03035 0.89 -1.3 705,512 + CA264_03035 0.89 -1.7 705,512 + CA264_03035 0.89 -1.8 705,512 + CA264_03035 0.89 -0.4 705,513 - CA264_03035 0.89 -1.7 705,543 - -1.8 705,543 - -0.9 705,543 - -1.1 705,549 + -0.8 705,550 - -0.0 705,687 - +1.9 705,726 + +0.7 705,727 - -1.0 705,733 - -0.8 705,809 + -1.7 705,809 + -2.3 705,810 - +0.7 705,810 - +0.6 705,821 + -0.8 705,823 + +0.1 705,824 - -0.5 705,949 - -0.9 705,985 + -1.0 705,985 + +0.0 706,015 + +1.2 706,016 - +0.4 706,017 + +1.4 706,018 - -1.7 706,029 + +1.4 706,029 + +0.6 706,029 + +0.1 706,029 + +2.1 706,030 - -0.1 706,030 - -0.3 706,030 - -1.1 706,030 - -1.0 706,101 + +1.7 706,107 - +1.0 706,107 - -0.7 706,107 - -0.1 706,149 - -0.5 706,149 - +0.5 706,149 - -0.2 706,149 - -1.4 706,200 + +0.7 706,200 + +2.0 706,330 + CA264_03040 0.13 -0.9 706,377 - CA264_03040 0.14 -1.0 706,837 + CA264_03040 0.31 +2.7
Or see this region's nucleotide sequence