Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_02490

Experiment: m.b. Cisplatin 0.035 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_02480 and CA264_02485 are separated by 80 nucleotidesCA264_02485 and CA264_02490 are separated by 2 nucleotidesCA264_02490 and CA264_02495 are separated by 112 nucleotides CA264_02480: CA264_02480 - 3-dehydroquinate synthase, at 576,701 to 577,879 _02480 CA264_02485: CA264_02485 - polyprenyltransferase, at 577,960 to 578,868 _02485 CA264_02490: CA264_02490 - hydrolase TatD, at 578,871 to 579,812 _02490 CA264_02495: CA264_02495 - hypothetical protein, at 579,925 to 580,821 _02495 Position (kb) 578 579 580Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 577.893 kb on + strandat 577.894 kb on - strandat 577.915 kb on + strandat 577.916 kb on - strandat 577.916 kb on - strandat 577.916 kb on - strandat 577.919 kb on + strandat 577.920 kb on - strandat 577.920 kb on - strandat 577.920 kb on - strandat 577.988 kb on + strandat 578.192 kb on + strand, within CA264_02485at 578.333 kb on + strand, within CA264_02485at 578.333 kb on + strand, within CA264_02485at 578.371 kb on + strand, within CA264_02485at 578.372 kb on - strand, within CA264_02485at 578.475 kb on - strand, within CA264_02485at 578.575 kb on + strand, within CA264_02485at 578.575 kb on + strand, within CA264_02485at 578.576 kb on - strand, within CA264_02485at 578.576 kb on - strand, within CA264_02485at 578.671 kb on + strand, within CA264_02485at 578.672 kb on - strand, within CA264_02485at 578.685 kb on - strand, within CA264_02485at 578.761 kb on - strand, within CA264_02485at 578.799 kb on + strandat 578.800 kb on - strandat 578.800 kb on - strandat 578.802 kb on + strandat 578.802 kb on + strandat 578.803 kb on - strandat 578.849 kb on + strandat 578.850 kb on - strandat 578.877 kb on + strandat 578.877 kb on + strandat 578.877 kb on + strandat 578.878 kb on - strandat 578.878 kb on - strandat 578.878 kb on - strandat 578.878 kb on - strandat 578.878 kb on - strandat 578.880 kb on + strandat 578.880 kb on + strandat 578.880 kb on + strandat 578.880 kb on + strandat 578.880 kb on + strandat 578.880 kb on + strandat 578.885 kb on + strandat 578.910 kb on + strandat 578.979 kb on + strand, within CA264_02490at 579.075 kb on + strand, within CA264_02490at 579.160 kb on - strand, within CA264_02490at 579.167 kb on + strand, within CA264_02490at 579.221 kb on + strand, within CA264_02490at 579.233 kb on - strand, within CA264_02490at 579.293 kb on + strand, within CA264_02490at 579.409 kb on - strand, within CA264_02490at 579.442 kb on + strand, within CA264_02490at 579.487 kb on - strand, within CA264_02490at 579.534 kb on + strand, within CA264_02490at 579.561 kb on - strand, within CA264_02490at 579.561 kb on - strand, within CA264_02490at 579.576 kb on - strand, within CA264_02490at 579.593 kb on - strand, within CA264_02490at 579.653 kb on - strand, within CA264_02490at 579.709 kb on - strand, within CA264_02490at 579.806 kb on + strandat 579.843 kb on - strandat 579.843 kb on - strandat 579.847 kb on + strandat 579.847 kb on + strandat 580.107 kb on + strand, within CA264_02495at 580.115 kb on - strand, within CA264_02495at 580.115 kb on - strand, within CA264_02495at 580.130 kb on - strand, within CA264_02495at 580.132 kb on - strand, within CA264_02495at 580.200 kb on - strand, within CA264_02495at 580.250 kb on + strand, within CA264_02495at 580.250 kb on + strand, within CA264_02495at 580.251 kb on - strand, within CA264_02495at 580.322 kb on + strand, within CA264_02495at 580.322 kb on + strand, within CA264_02495at 580.446 kb on - strand, within CA264_02495at 580.497 kb on + strand, within CA264_02495at 580.524 kb on - strand, within CA264_02495at 580.524 kb on - strand, within CA264_02495at 580.524 kb on - strand, within CA264_02495at 580.616 kb on - strand, within CA264_02495at 580.682 kb on + strand, within CA264_02495at 580.803 kb on - strandat 580.803 kb on - strandat 580.803 kb on - strandat 580.803 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.035 mg/ml
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577,893 + +0.6
577,894 - -0.7
577,915 + +1.2
577,916 - -0.1
577,916 - -0.3
577,916 - -0.6
577,919 + -1.1
577,920 - +0.2
577,920 - -0.9
577,920 - +0.3
577,988 + +0.1
578,192 + CA264_02485 0.26 -0.7
578,333 + CA264_02485 0.41 +0.3
578,333 + CA264_02485 0.41 +1.1
578,371 + CA264_02485 0.45 -1.0
578,372 - CA264_02485 0.45 +1.6
578,475 - CA264_02485 0.57 +1.9
578,575 + CA264_02485 0.68 +0.0
578,575 + CA264_02485 0.68 +1.1
578,576 - CA264_02485 0.68 +0.2
578,576 - CA264_02485 0.68 -0.1
578,671 + CA264_02485 0.78 -0.7
578,672 - CA264_02485 0.78 -0.9
578,685 - CA264_02485 0.80 -0.6
578,761 - CA264_02485 0.88 -2.2
578,799 + +0.2
578,800 - +1.1
578,800 - +0.0
578,802 + -0.9
578,802 + -0.2
578,803 - +0.1
578,849 + +1.0
578,850 - +1.8
578,877 + +0.2
578,877 + -0.2
578,877 + -0.4
578,878 - -1.1
578,878 - -0.4
578,878 - -2.0
578,878 - +2.9
578,878 - +0.5
578,880 + +2.1
578,880 + +0.5
578,880 + +0.8
578,880 + +2.7
578,880 + +2.7
578,880 + +0.1
578,885 + +0.1
578,910 + -1.1
578,979 + CA264_02490 0.11 +1.4
579,075 + CA264_02490 0.22 -1.2
579,160 - CA264_02490 0.31 -1.4
579,167 + CA264_02490 0.31 +0.6
579,221 + CA264_02490 0.37 -0.5
579,233 - CA264_02490 0.38 +1.4
579,293 + CA264_02490 0.45 +0.8
579,409 - CA264_02490 0.57 +0.6
579,442 + CA264_02490 0.61 -0.5
579,487 - CA264_02490 0.65 +0.0
579,534 + CA264_02490 0.70 +2.3
579,561 - CA264_02490 0.73 +0.1
579,561 - CA264_02490 0.73 +1.6
579,576 - CA264_02490 0.75 +2.9
579,593 - CA264_02490 0.77 -1.0
579,653 - CA264_02490 0.83 -0.6
579,709 - CA264_02490 0.89 -0.3
579,806 + -1.3
579,843 - -2.6
579,843 - +0.7
579,847 + -1.7
579,847 + -1.7
580,107 + CA264_02495 0.20 -0.7
580,115 - CA264_02495 0.21 +0.1
580,115 - CA264_02495 0.21 -1.7
580,130 - CA264_02495 0.23 -0.3
580,132 - CA264_02495 0.23 +0.5
580,200 - CA264_02495 0.31 +1.1
580,250 + CA264_02495 0.36 -1.5
580,250 + CA264_02495 0.36 -1.5
580,251 - CA264_02495 0.36 -0.3
580,322 + CA264_02495 0.44 +0.7
580,322 + CA264_02495 0.44 -2.0
580,446 - CA264_02495 0.58 +0.0
580,497 + CA264_02495 0.64 +0.2
580,524 - CA264_02495 0.67 +1.3
580,524 - CA264_02495 0.67 -0.7
580,524 - CA264_02495 0.67 -1.6
580,616 - CA264_02495 0.77 -2.9
580,682 + CA264_02495 0.84 +0.6
580,803 - -0.3
580,803 - +0.5
580,803 - +1.9
580,803 - -0.3

Or see this region's nucleotide sequence