Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_02440

Experiment: m.b. Cisplatin 0.035 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_02435 and CA264_02440 are separated by 186 nucleotidesCA264_02440 and CA264_02445 are separated by 22 nucleotides CA264_02435: CA264_02435 - hypothetical protein, at 568,157 to 568,807 _02435 CA264_02440: CA264_02440 - vitamin K epoxide reductase, at 568,994 to 570,556 _02440 CA264_02445: CA264_02445 - trehalase-like protein, at 570,579 to 571,853 _02445 Position (kb) 568 569 570 571Strain fitness (log2 ratio) -2 -1 0 1 2at 568.067 kb on + strandat 568.075 kb on + strandat 568.076 kb on - strandat 568.148 kb on + strandat 568.200 kb on + strandat 568.204 kb on - strandat 568.378 kb on + strand, within CA264_02435at 568.391 kb on - strand, within CA264_02435at 568.484 kb on + strand, within CA264_02435at 568.484 kb on + strand, within CA264_02435at 568.486 kb on + strand, within CA264_02435at 568.486 kb on + strand, within CA264_02435at 568.486 kb on + strand, within CA264_02435at 568.487 kb on - strand, within CA264_02435at 568.543 kb on + strand, within CA264_02435at 568.590 kb on + strand, within CA264_02435at 568.631 kb on + strand, within CA264_02435at 568.638 kb on - strand, within CA264_02435at 568.755 kb on - strandat 568.790 kb on + strandat 568.790 kb on + strandat 568.799 kb on - strandat 568.807 kb on + strandat 568.807 kb on + strandat 568.807 kb on + strandat 568.807 kb on + strandat 568.807 kb on + strandat 568.807 kb on + strandat 568.807 kb on + strandat 568.807 kb on + strandat 568.807 kb on + strandat 568.808 kb on - strandat 568.808 kb on - strandat 568.808 kb on - strandat 568.810 kb on + strandat 568.811 kb on - strandat 568.844 kb on + strandat 568.888 kb on + strandat 568.889 kb on - strandat 568.889 kb on - strandat 568.895 kb on + strandat 568.944 kb on + strandat 568.944 kb on + strandat 568.945 kb on - strandat 568.947 kb on - strandat 568.953 kb on - strandat 568.953 kb on - strandat 568.962 kb on - strandat 568.990 kb on - strandat 568.990 kb on - strandat 568.990 kb on - strandat 569.053 kb on + strandat 569.074 kb on + strandat 569.075 kb on - strandat 569.140 kb on + strandat 569.310 kb on + strand, within CA264_02440at 569.529 kb on + strand, within CA264_02440at 569.615 kb on + strand, within CA264_02440at 569.615 kb on + strand, within CA264_02440at 569.616 kb on - strand, within CA264_02440at 569.711 kb on + strand, within CA264_02440at 570.040 kb on - strand, within CA264_02440at 570.052 kb on - strand, within CA264_02440at 570.474 kb on + strandat 570.474 kb on + strandat 570.475 kb on - strandat 570.528 kb on - strandat 570.634 kb on + strandat 570.635 kb on - strandat 570.691 kb on - strandat 570.731 kb on + strand, within CA264_02445at 570.731 kb on + strand, within CA264_02445at 570.732 kb on - strand, within CA264_02445at 570.732 kb on - strand, within CA264_02445at 570.734 kb on - strand, within CA264_02445at 570.821 kb on + strand, within CA264_02445at 570.822 kb on - strand, within CA264_02445at 570.822 kb on - strand, within CA264_02445at 570.824 kb on + strand, within CA264_02445at 570.824 kb on + strand, within CA264_02445at 570.824 kb on + strand, within CA264_02445at 570.824 kb on + strand, within CA264_02445at 570.825 kb on - strand, within CA264_02445at 570.825 kb on - strand, within CA264_02445at 570.825 kb on - strand, within CA264_02445at 570.988 kb on - strand, within CA264_02445at 571.023 kb on + strand, within CA264_02445at 571.024 kb on - strand, within CA264_02445at 571.074 kb on - strand, within CA264_02445at 571.074 kb on - strand, within CA264_02445at 571.076 kb on + strand, within CA264_02445at 571.077 kb on - strand, within CA264_02445at 571.077 kb on - strand, within CA264_02445at 571.211 kb on + strand, within CA264_02445at 571.211 kb on - strand, within CA264_02445at 571.212 kb on - strand, within CA264_02445at 571.258 kb on + strand, within CA264_02445at 571.275 kb on + strand, within CA264_02445at 571.275 kb on + strand, within CA264_02445at 571.276 kb on - strand, within CA264_02445at 571.341 kb on + strand, within CA264_02445at 571.383 kb on + strand, within CA264_02445at 571.389 kb on + strand, within CA264_02445at 571.389 kb on + strand, within CA264_02445at 571.390 kb on - strand, within CA264_02445at 571.390 kb on - strand, within CA264_02445at 571.390 kb on - strand, within CA264_02445at 571.390 kb on - strand, within CA264_02445at 571.413 kb on + strand, within CA264_02445at 571.464 kb on - strand, within CA264_02445

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.035 mg/ml
remove
568,067 + -0.8
568,075 + +0.1
568,076 - -0.1
568,148 + -0.6
568,200 + +2.0
568,204 - +0.8
568,378 + CA264_02435 0.34 +2.6
568,391 - CA264_02435 0.36 -0.9
568,484 + CA264_02435 0.50 -0.2
568,484 + CA264_02435 0.50 -1.2
568,486 + CA264_02435 0.51 -1.8
568,486 + CA264_02435 0.51 -0.4
568,486 + CA264_02435 0.51 -0.9
568,487 - CA264_02435 0.51 -0.7
568,543 + CA264_02435 0.59 +0.0
568,590 + CA264_02435 0.67 -0.9
568,631 + CA264_02435 0.73 -0.3
568,638 - CA264_02435 0.74 -0.4
568,755 - -1.4
568,790 + +0.3
568,790 + +0.2
568,799 - +0.5
568,807 + -0.6
568,807 + -1.3
568,807 + -0.5
568,807 + +0.3
568,807 + +0.8
568,807 + +0.4
568,807 + -0.3
568,807 + -0.6
568,807 + -0.9
568,808 - +2.1
568,808 - -0.7
568,808 - -1.3
568,810 + -1.0
568,811 - -2.1
568,844 + -0.0
568,888 + -1.1
568,889 - -0.7
568,889 - +1.0
568,895 + +0.9
568,944 + -0.6
568,944 + +1.6
568,945 - -0.9
568,947 - -1.5
568,953 - +1.1
568,953 - +0.9
568,962 - -0.2
568,990 - +2.3
568,990 - -0.3
568,990 - +0.1
569,053 + -1.3
569,074 + -0.4
569,075 - -0.8
569,140 + +1.6
569,310 + CA264_02440 0.20 +0.3
569,529 + CA264_02440 0.34 -1.3
569,615 + CA264_02440 0.40 -0.0
569,615 + CA264_02440 0.40 -1.8
569,616 - CA264_02440 0.40 -1.0
569,711 + CA264_02440 0.46 -0.2
570,040 - CA264_02440 0.67 +0.5
570,052 - CA264_02440 0.68 -1.0
570,474 + +0.2
570,474 + +0.1
570,475 - -0.8
570,528 - +1.3
570,634 + +1.8
570,635 - -0.8
570,691 - +1.9
570,731 + CA264_02445 0.12 +1.6
570,731 + CA264_02445 0.12 -0.2
570,732 - CA264_02445 0.12 -0.6
570,732 - CA264_02445 0.12 -0.7
570,734 - CA264_02445 0.12 -1.1
570,821 + CA264_02445 0.19 +1.3
570,822 - CA264_02445 0.19 +1.1
570,822 - CA264_02445 0.19 -0.0
570,824 + CA264_02445 0.19 +1.1
570,824 + CA264_02445 0.19 +0.2
570,824 + CA264_02445 0.19 -1.9
570,824 + CA264_02445 0.19 -0.3
570,825 - CA264_02445 0.19 -0.6
570,825 - CA264_02445 0.19 -0.9
570,825 - CA264_02445 0.19 +0.2
570,988 - CA264_02445 0.32 +0.6
571,023 + CA264_02445 0.35 -0.7
571,024 - CA264_02445 0.35 -0.3
571,074 - CA264_02445 0.39 -1.2
571,074 - CA264_02445 0.39 -0.9
571,076 + CA264_02445 0.39 +0.3
571,077 - CA264_02445 0.39 -0.3
571,077 - CA264_02445 0.39 +0.7
571,211 + CA264_02445 0.50 -1.5
571,211 - CA264_02445 0.50 -1.3
571,212 - CA264_02445 0.50 -0.0
571,258 + CA264_02445 0.53 -1.3
571,275 + CA264_02445 0.55 +0.4
571,275 + CA264_02445 0.55 -2.4
571,276 - CA264_02445 0.55 -0.2
571,341 + CA264_02445 0.60 -0.4
571,383 + CA264_02445 0.63 -0.7
571,389 + CA264_02445 0.64 +1.3
571,389 + CA264_02445 0.64 +0.4
571,390 - CA264_02445 0.64 -0.6
571,390 - CA264_02445 0.64 -0.3
571,390 - CA264_02445 0.64 -0.4
571,390 - CA264_02445 0.64 +0.3
571,413 + CA264_02445 0.65 +0.1
571,464 - CA264_02445 0.69 +0.4

Or see this region's nucleotide sequence