Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_02430

Experiment: m.b. Cisplatin 0.035 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_02425 and CA264_02430 are separated by 237 nucleotidesCA264_02430 and CA264_02435 are separated by 338 nucleotides CA264_02425: CA264_02425 - biotin synthase BioB, at 564,747 to 565,748 _02425 CA264_02430: CA264_02430 - glucoamylase, at 565,986 to 567,818 _02430 CA264_02435: CA264_02435 - hypothetical protein, at 568,157 to 568,807 _02435 Position (kb) 565 566 567 568Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 565.094 kb on + strand, within CA264_02425at 565.095 kb on + strand, within CA264_02425at 565.095 kb on - strand, within CA264_02425at 565.098 kb on + strand, within CA264_02425at 565.098 kb on + strand, within CA264_02425at 565.103 kb on + strand, within CA264_02425at 565.103 kb on + strand, within CA264_02425at 565.119 kb on - strand, within CA264_02425at 565.119 kb on - strand, within CA264_02425at 565.151 kb on + strand, within CA264_02425at 565.172 kb on + strand, within CA264_02425at 565.203 kb on - strand, within CA264_02425at 565.216 kb on + strand, within CA264_02425at 565.216 kb on + strand, within CA264_02425at 565.232 kb on + strand, within CA264_02425at 565.232 kb on + strand, within CA264_02425at 565.243 kb on + strand, within CA264_02425at 565.243 kb on + strand, within CA264_02425at 565.243 kb on + strand, within CA264_02425at 565.243 kb on + strand, within CA264_02425at 565.243 kb on + strand, within CA264_02425at 565.338 kb on - strand, within CA264_02425at 565.508 kb on + strand, within CA264_02425at 565.527 kb on - strand, within CA264_02425at 565.527 kb on - strand, within CA264_02425at 565.583 kb on + strand, within CA264_02425at 565.599 kb on - strand, within CA264_02425at 565.599 kb on - strand, within CA264_02425at 565.602 kb on + strand, within CA264_02425at 565.603 kb on - strand, within CA264_02425at 565.638 kb on + strand, within CA264_02425at 565.639 kb on - strand, within CA264_02425at 565.751 kb on + strandat 565.775 kb on + strandat 565.788 kb on + strandat 565.835 kb on + strandat 565.987 kb on + strandat 565.987 kb on + strandat 565.988 kb on - strandat 566.031 kb on + strandat 566.031 kb on + strandat 566.218 kb on + strand, within CA264_02430at 566.339 kb on + strand, within CA264_02430at 566.468 kb on - strand, within CA264_02430at 566.479 kb on + strand, within CA264_02430at 566.480 kb on - strand, within CA264_02430at 566.546 kb on + strand, within CA264_02430at 566.729 kb on - strand, within CA264_02430at 566.753 kb on - strand, within CA264_02430at 566.901 kb on + strand, within CA264_02430at 566.902 kb on - strand, within CA264_02430at 567.010 kb on + strand, within CA264_02430at 567.109 kb on - strand, within CA264_02430at 567.195 kb on - strand, within CA264_02430at 567.220 kb on + strand, within CA264_02430at 567.220 kb on + strand, within CA264_02430at 567.221 kb on - strand, within CA264_02430at 567.221 kb on - strand, within CA264_02430at 567.221 kb on - strand, within CA264_02430at 567.614 kb on - strand, within CA264_02430at 567.623 kb on + strand, within CA264_02430at 567.625 kb on + strand, within CA264_02430at 567.767 kb on + strandat 567.767 kb on + strandat 567.791 kb on - strandat 567.809 kb on - strandat 567.809 kb on - strandat 567.821 kb on + strandat 567.823 kb on + strandat 567.868 kb on + strandat 567.869 kb on - strandat 568.067 kb on + strandat 568.075 kb on + strandat 568.076 kb on - strandat 568.148 kb on + strandat 568.200 kb on + strandat 568.204 kb on - strandat 568.378 kb on + strand, within CA264_02435at 568.391 kb on - strand, within CA264_02435at 568.484 kb on + strand, within CA264_02435at 568.484 kb on + strand, within CA264_02435at 568.486 kb on + strand, within CA264_02435at 568.486 kb on + strand, within CA264_02435at 568.486 kb on + strand, within CA264_02435at 568.487 kb on - strand, within CA264_02435at 568.543 kb on + strand, within CA264_02435at 568.590 kb on + strand, within CA264_02435at 568.631 kb on + strand, within CA264_02435at 568.638 kb on - strand, within CA264_02435at 568.755 kb on - strandat 568.790 kb on + strandat 568.790 kb on + strandat 568.799 kb on - strandat 568.807 kb on + strandat 568.807 kb on + strandat 568.807 kb on + strandat 568.807 kb on + strandat 568.807 kb on + strandat 568.807 kb on + strandat 568.807 kb on + strandat 568.807 kb on + strandat 568.807 kb on + strandat 568.808 kb on - strandat 568.808 kb on - strandat 568.808 kb on - strandat 568.810 kb on + strandat 568.811 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.035 mg/ml
remove
565,094 + CA264_02425 0.35 -2.4
565,095 + CA264_02425 0.35 -1.2
565,095 - CA264_02425 0.35 -0.2
565,098 + CA264_02425 0.35 +0.6
565,098 + CA264_02425 0.35 -0.4
565,103 + CA264_02425 0.36 +1.1
565,103 + CA264_02425 0.36 +1.1
565,119 - CA264_02425 0.37 -1.4
565,119 - CA264_02425 0.37 -1.0
565,151 + CA264_02425 0.40 +0.4
565,172 + CA264_02425 0.42 -0.3
565,203 - CA264_02425 0.46 -0.9
565,216 + CA264_02425 0.47 -0.6
565,216 + CA264_02425 0.47 +1.1
565,232 + CA264_02425 0.48 -0.8
565,232 + CA264_02425 0.48 -1.4
565,243 + CA264_02425 0.50 -1.2
565,243 + CA264_02425 0.50 +0.3
565,243 + CA264_02425 0.50 -0.3
565,243 + CA264_02425 0.50 +1.7
565,243 + CA264_02425 0.50 -2.1
565,338 - CA264_02425 0.59 +0.1
565,508 + CA264_02425 0.76 -0.6
565,527 - CA264_02425 0.78 +0.9
565,527 - CA264_02425 0.78 -2.9
565,583 + CA264_02425 0.83 +1.6
565,599 - CA264_02425 0.85 -0.7
565,599 - CA264_02425 0.85 -0.4
565,602 + CA264_02425 0.85 +0.9
565,603 - CA264_02425 0.85 +0.4
565,638 + CA264_02425 0.89 -1.6
565,639 - CA264_02425 0.89 +0.4
565,751 + +1.2
565,775 + +0.1
565,788 + -1.2
565,835 + -0.3
565,987 + +1.0
565,987 + +0.0
565,988 - -0.3
566,031 + -0.0
566,031 + -1.6
566,218 + CA264_02430 0.13 -1.0
566,339 + CA264_02430 0.19 -0.6
566,468 - CA264_02430 0.26 -0.1
566,479 + CA264_02430 0.27 -0.1
566,480 - CA264_02430 0.27 +2.9
566,546 + CA264_02430 0.31 +1.4
566,729 - CA264_02430 0.41 +3.0
566,753 - CA264_02430 0.42 -1.0
566,901 + CA264_02430 0.50 -1.3
566,902 - CA264_02430 0.50 -0.7
567,010 + CA264_02430 0.56 -0.8
567,109 - CA264_02430 0.61 +0.3
567,195 - CA264_02430 0.66 -0.8
567,220 + CA264_02430 0.67 +1.0
567,220 + CA264_02430 0.67 +0.4
567,221 - CA264_02430 0.67 +1.6
567,221 - CA264_02430 0.67 +0.3
567,221 - CA264_02430 0.67 -0.8
567,614 - CA264_02430 0.89 -1.1
567,623 + CA264_02430 0.89 -0.0
567,625 + CA264_02430 0.89 -0.0
567,767 + +3.1
567,767 + -1.7
567,791 - +0.2
567,809 - +3.0
567,809 - +2.2
567,821 + +0.1
567,823 + -1.3
567,868 + -0.3
567,869 - +5.3
568,067 + -0.8
568,075 + +0.1
568,076 - -0.1
568,148 + -0.6
568,200 + +2.0
568,204 - +0.8
568,378 + CA264_02435 0.34 +2.6
568,391 - CA264_02435 0.36 -0.9
568,484 + CA264_02435 0.50 -0.2
568,484 + CA264_02435 0.50 -1.2
568,486 + CA264_02435 0.51 -1.8
568,486 + CA264_02435 0.51 -0.4
568,486 + CA264_02435 0.51 -0.9
568,487 - CA264_02435 0.51 -0.7
568,543 + CA264_02435 0.59 +0.0
568,590 + CA264_02435 0.67 -0.9
568,631 + CA264_02435 0.73 -0.3
568,638 - CA264_02435 0.74 -0.4
568,755 - -1.4
568,790 + +0.3
568,790 + +0.2
568,799 - +0.5
568,807 + -0.6
568,807 + -1.3
568,807 + -0.5
568,807 + +0.3
568,807 + +0.8
568,807 + +0.4
568,807 + -0.3
568,807 + -0.6
568,807 + -0.9
568,808 - +2.1
568,808 - -0.7
568,808 - -1.3
568,810 + -1.0
568,811 - -2.1

Or see this region's nucleotide sequence